View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_6 (Length: 583)
Name: NF0750_high_6
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Complemental strand, 5663432 - 5662882
Alignment:
| Q |
9 |
gaagaatatcattattataacagaatagcaaagtcaacacagaagnnnnnnnn-cacatgattctcataagcagtttatagtaacatgttagcaatatca |
107 |
Q |
| |
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| T |
5663432 |
gaagaatatcattattataacagaatagcaaagtcaacacagaagaaaaaaaaacacatgattctcataagcagattatagtaacatgttagcaatatca |
5663333 |
T |
|
| Q |
108 |
gcacagaagaaaactattataacaacagtagtataataacataaagatgaagaagttataaaccaaggcagcagaacataactactggctcgtgagtacc |
207 |
Q |
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| T |
5663332 |
gcacagaagaaaactattataacaacagtagtataataacagaaagatgaagaagttataaaccaaggcagcagaacataactactggctcgtgagtacc |
5663233 |
T |
|
| Q |
208 |
aaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttcttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcgg |
307 |
Q |
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| T |
5663232 |
aaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttcttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcgg |
5663133 |
T |
|
| Q |
308 |
agcgagatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttttcccgttttattg |
407 |
Q |
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| T |
5663132 |
agcgagatacaccataaacaatgaattcaatcttgctaatacaattacctggatgcacttgtatagaataatcattcaaccgtgtttttccgttttattg |
5663033 |
T |
|
| Q |
408 |
aacacggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttatagagaaa |
507 |
Q |
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| T |
5663032 |
aacacggatatgggcgtatttgggcaaatttggaaatggatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttacagagaaa |
5662933 |
T |
|
| Q |
508 |
gggggagtggacggtgtgcgatggggagagtgggtgcgagagaaagggggt |
558 |
Q |
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| T |
5662932 |
gggggagtggacggtgtgcgatggggagaatgggtgcgagagaaagggggt |
5662882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 166 - 558
Target Start/End: Complemental strand, 52131508 - 52131126
Alignment:
| Q |
166 |
taaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagcta-atgtgtctttaacttcttgtga |
264 |
Q |
| |
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| T |
52131508 |
taaaccaaggcagcagaacataact----tctcgtgagtacc-aaattgacaggaaatggaggataacgtgacgctacatgt-tctttgacttcttgtga |
52131415 |
T |
|
| Q |
265 |
gaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgca |
364 |
Q |
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| T |
52131414 |
gaagcgaccatggtcttaccgatgacagaagcttcgaaatcggattgagatacaccgtcaataataaattcaatcttgctaatacaattacctggatgca |
52131315 |
T |
|
| Q |
365 |
cttgtattgaataatcattcaaccgtgttttcccgttttattgaacacggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaagcag |
464 |
Q |
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| T |
52131314 |
cttgtattgaataatcattcaaccgtgttct-tcgttttactgaacacgg--atgggcgtatttgggcgaatttggatatggatatagatgtagaagcat |
52131218 |
T |
|
| Q |
465 |
aacccgagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtgtgcgatggggagagtgggtgcgagagaaagggggt |
558 |
Q |
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||||||||||||||||||||||||||||||||||| || | | |||| ||||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
52131217 |
aacccgagaggaagaagtggaagaatcacgatttacag-ggtggcgggactggacggtg-gcgatggggagaatgggtgcaagagaaagggggt |
52131126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 261 - 554
Target Start/End: Original strand, 11649155 - 11649435
Alignment:
| Q |
261 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtaaacaatgaattcaatcttgctaatacaattacctgga |
360 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
11649254 |
T |
|
| Q |
361 |
tgcacttgtattgaataatcattcaaccgtgttttcccgttttattgaacacggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaa |
460 |
Q |
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||||||||||||||||||||||||||||||||| | || ||||| ||||||||| |||||||| ||||||| |||||||||||||||||| |
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| T |
11649255 |
tgcacttgtattgaataatcattcaaccgtgttcttcctttttagtgaacacgg--atgggcgt----------atttggatatggatatagatgtagaa |
11649342 |
T |
|
| Q |
461 |
gcagaacccgagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtgtgcgatggggagagtgggtgcgagagaaagg |
554 |
Q |
| |
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| T |
11649343 |
gcagaacccgagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtg-gcgatggggagaatgggtgcgagagaaagg |
11649435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 213 - 412
Target Start/End: Complemental strand, 22007875 - 22007672
Alignment:
| Q |
213 |
tgacaggaaatggaggagaat----gtgaagcta-atgtgtctttaacttcttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcgg |
307 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||| || ||||||||| || ||||||| |
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| T |
22007875 |
tgacaggaaatggaggagaatcaacgtgaagctacatgt-tctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagttttgaagtcga |
22007777 |
T |
|
| Q |
308 |
agcgagatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttttcccgttttattg |
407 |
Q |
| |
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|||||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||| ||||||||||||||||||||| ||||| | || ||||| || |
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| T |
22007776 |
agcgagatacaccgccaacaatgaattcagtcttcgtaatacacttatctggatgcacctgtattgaataatcattcaacagtgttcttcctttttactg |
22007677 |
T |
|
| Q |
408 |
aacac |
412 |
Q |
| |
|
||||| |
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|
| T |
22007676 |
aacac |
22007672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 22007619 - 22007561
Alignment:
| Q |
446 |
gatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttatagag |
504 |
Q |
| |
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|||| |||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| |
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| T |
22007619 |
gatacagatgtagaagcggaagccgagaggaagaagtggaagaatcgcgatttacagag |
22007561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 11649122 - 11649159
Alignment:
| Q |
166 |
taaaccaaggcagcagaacataactactggctcgtgag |
203 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |
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|
| T |
11649122 |
taaaccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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