View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_67 (Length: 239)
Name: NF0750_high_67
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_67 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 4814714 - 4814936
Alignment:
| Q |
15 |
gatcgacatacaaaaattacaaagcaaaggtgtcgtatataatggaacacctaaaagaaaaacccacaaaagcactaatacgaacactaccgaaccaagt |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
4814714 |
gatcgacatacaaaaactacaaagcaaaggtgtcgtatataatggaacacctaaaagagaaacctacaaaagcactgatacgaacactacccaaccaagt |
4814813 |
T |
|
| Q |
115 |
actatcaccaacaccaataagaaaattaaccaccaaaatcaaagttaacacctgaatcaaagcgtaacccacacttcctcctgaatgaccacaaaaacta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4814814 |
actatcaccaacaccaataagaaaattaaccaccaaaaccaaagttaacacctgaatcaaagcgtaacccacacttcctcctgaatgaccacagaaacta |
4814913 |
T |
|
| Q |
215 |
aattcaattacctatagacttca |
237 |
Q |
| |
|
||||||||||||||| ||||||| |
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| T |
4814914 |
aattcaattacctatcgacttca |
4814936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 4782283 - 4782505
Alignment:
| Q |
15 |
gatcgacatacaaaaattacaaagcaaaggtgtcgtatataatggaacacctaaaagaaaaacccacaaaagcactaatacgaacactaccgaaccaagt |
114 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
4782283 |
gatcgacatacaaaaactacaaagcaaaggtgtcgtatataatggaacacctaaaagagaaacctacaaaagcacttatacgaacactacctaaccaagt |
4782382 |
T |
|
| Q |
115 |
actatcaccaacaccaataagaaaattaaccaccaaaatcaaagttaacacctgaatcaaagcgtaacccacacttcctcctgaatgaccacaaaaacta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4782383 |
actatcaccaacaccaataagaaaattaaccaccaaaaccaaagttaacacctgaatcaaagcgtaacccacacttcctcctgaatgaccacagaaacta |
4782482 |
T |
|
| Q |
215 |
aattcaattacctatagacttca |
237 |
Q |
| |
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||||||||| ||||| ||||||| |
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| T |
4782483 |
aattcaatttcctatcgacttca |
4782505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 36132446 - 36132544
Alignment:
| Q |
126 |
caccaataagaaaattaaccaccaaaatcaaagttaacacctgaatcaaag-cgtaaccc--acacttcctcctgaatgaccacaaaaactaaattcaa |
221 |
Q |
| |
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|||||||||||||| || ||||||||||||| ||||| | |||||||| |||||||| |||||||||| ||||||||||||||||| ||| |||| |
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| T |
36132446 |
caccaataagaaaacaaattaccaaaatcaaagccaacacttaaatcaaagacgtaaccccaacacttcctcatgaatgaccacaaaaacaaaaatcaa |
36132544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 18786921 - 18786973
Alignment:
| Q |
123 |
caacaccaataagaaaattaaccaccaaaatcaaagttaacacctgaatcaaa |
175 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||| ||||||| ||||||| |
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| T |
18786921 |
caacaccaataaaaaaaataaccaccgaaatcaaagtcaacacctaaatcaaa |
18786973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 17427621 - 17427724
Alignment:
| Q |
120 |
caccaacaccaataagaaaattaaccacc-aaaatcaaagttaacacctgaatcaaagc-gtaacccacacttcctcctgaatgaccacaaaaactaaat |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||| | | ||||| | | ||||||||||||| ||||||| ||| |||| |||| |
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| T |
17427621 |
caccaacaccaataagaaaaataaccaccaaaaatcaaagtcaacacttaagtcaaatcaagaccccacacttcctcgcgaatgacaacataaacaaaat |
17427720 |
T |
|
| Q |
218 |
tcaa |
221 |
Q |
| |
|
|||| |
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|
| T |
17427721 |
tcaa |
17427724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 21321923 - 21322012
Alignment:
| Q |
120 |
caccaacaccaataagaaaattaaccaccaaaatcaaagttaacacctgaatcaaag--cgtaacccacacttcctcctgaatgaccaca |
207 |
Q |
| |
|
|||||||||||||||||||| | || ||||||| ||||||||||| | |||||||| | ||||||||||||| |||||||||||| |
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| T |
21321923 |
caccaacaccaataagaaaactgactaccaaaaccaaagttaacatttaaatcaaagtcaatcgcccacacttcctcatgaatgaccaca |
21322012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 31122676 - 31122733
Alignment:
| Q |
120 |
caccaacaccaataag-aaaattaaccaccaaaatcaaagttaacacctgaatcaaag |
176 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||| |||||| ||||||| |||||||| |
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|
| T |
31122676 |
caccaacaccaataagtaaaactaaccactaaaaccaaagtcaacacctaaatcaaag |
31122733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 15676553 - 15676609
Alignment:
| Q |
121 |
accaacaccaataagaaaattaaccaccaaaatcaaagttaacacctgaatcaaagc |
177 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||| ||||||| || |||||| |
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|
| T |
15676553 |
accaacaccaataagaaatctaaccagcaaaaccaaagtcaacacctaaaccaaagc |
15676609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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