View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_7 (Length: 548)
Name: NF0750_high_7
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 27 - 523
Target Start/End: Complemental strand, 5663378 - 5662882
Alignment:
| Q |
27 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacataaagatgaagaa |
126 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacagaaagatgaagaa |
5663279 |
T |
|
| Q |
127 |
gttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttcttg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663278 |
gttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttcttg |
5663179 |
T |
|
| Q |
227 |
tgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtaaacaatgaattcaatcttgctaatacaattacctggat |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5663178 |
tgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccataaacaatgaattcaatcttgctaatacaattacctggat |
5663079 |
T |
|
| Q |
327 |
gcacttgtattgaataatcattcaaccgtgttttcccgttttattgaacacggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaag |
426 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5663078 |
gcacttgtatagaataatcattcaaccgtgtttttccgttttattgaacacggatatgggcgtatttgggcaaatttggaaatggatatagatgtagaag |
5662979 |
T |
|
| Q |
427 |
cagaacccgagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtgtgcgatggggagagtgggtgcgagagaaagggggt |
523 |
Q |
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| T |
5662978 |
cagaacccgagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtgtgcgatggggagaatgggtgcgagagaaagggggt |
5662882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 131 - 523
Target Start/End: Complemental strand, 52131508 - 52131126
Alignment:
| Q |
131 |
taaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagcta-atgtgtctttaacttcttgtga |
229 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| || |||| |||| |||| ||||| ||||||||||| |
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| T |
52131508 |
taaaccaaggcagcagaacataact----tctcgtgagtacc-aaattgacaggaaatggaggataacgtgacgctacatgt-tctttgacttcttgtga |
52131415 |
T |
|
| Q |
230 |
gaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgca |
329 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||||| |
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| T |
52131414 |
gaagcgaccatggtcttaccgatgacagaagcttcgaaatcggattgagatacaccgtcaataataaattcaatcttgctaatacaattacctggatgca |
52131315 |
T |
|
| Q |
330 |
cttgtattgaataatcattcaaccgtgttttcccgttttattgaacacggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaagcag |
429 |
Q |
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| T |
52131314 |
cttgtattgaataatcattcaaccgtgttct-tcgttttactgaacacgg--atgggcgtatttgggcgaatttggatatggatatagatgtagaagcat |
52131218 |
T |
|
| Q |
430 |
aacccgagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtgtgcgatggggagagtgggtgcgagagaaagggggt |
523 |
Q |
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||||||||||||||||||||||||||||||||||| || | | |||| ||||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
52131217 |
aacccgagaggaagaagtggaagaatcacgatttacag-ggtggcgggactggacggtg-gcgatggggagaatgggtgcaagagaaagggggt |
52131126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 226 - 519
Target Start/End: Original strand, 11649155 - 11649435
Alignment:
| Q |
226 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtaaacaatgaattcaatcttgctaatacaattacctgga |
325 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
11649254 |
T |
|
| Q |
326 |
tgcacttgtattgaataatcattcaaccgtgttttcccgttttattgaacacggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaa |
425 |
Q |
| |
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||||||||||||||||||||||||||||||||| | || ||||| ||||||||| |||||||| ||||||| |||||||||||||||||| |
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| T |
11649255 |
tgcacttgtattgaataatcattcaaccgtgttcttcctttttagtgaacacgg--atgggcgt----------atttggatatggatatagatgtagaa |
11649342 |
T |
|
| Q |
426 |
gcagaacccgagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtgtgcgatggggagagtgggtgcgagagaaagg |
519 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
11649343 |
gcagaacccgagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtg-gcgatggggagaatgggtgcgagagaaagg |
11649435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 178 - 377
Target Start/End: Complemental strand, 22007875 - 22007672
Alignment:
| Q |
178 |
tgacaggaaatggaggagaat----gtgaagcta-atgtgtctttaacttcttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcgg |
272 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||| || ||||||||| || ||||||| |
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| T |
22007875 |
tgacaggaaatggaggagaatcaacgtgaagctacatgt-tctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagttttgaagtcga |
22007777 |
T |
|
| Q |
273 |
agcgagatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttttcccgttttattg |
372 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||| ||||||||||||||||||||| ||||| | || ||||| || |
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| T |
22007776 |
agcgagatacaccgccaacaatgaattcagtcttcgtaatacacttatctggatgcacctgtattgaataatcattcaacagtgttcttcctttttactg |
22007677 |
T |
|
| Q |
373 |
aacac |
377 |
Q |
| |
|
||||| |
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|
| T |
22007676 |
aacac |
22007672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 469
Target Start/End: Complemental strand, 22007619 - 22007561
Alignment:
| Q |
411 |
gatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttatagag |
469 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| |
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|
| T |
22007619 |
gatacagatgtagaagcggaagccgagaggaagaagtggaagaatcgcgatttacagag |
22007561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 11649122 - 11649159
Alignment:
| Q |
131 |
taaaccaaggcagcagaacataactactggctcgtgag |
168 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |
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|
| T |
11649122 |
taaaccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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