View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_high_70 (Length: 228)

Name: NF0750_high_70
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_high_70
NF0750_high_70
[»] chr7 (11 HSPs)
chr7 (1-222)||(4815305-4815526)
chr7 (1-222)||(4782876-4783097)
chr7 (59-222)||(4711186-4711349)
chr7 (74-222)||(4845129-4845277)
chr7 (74-224)||(4637682-4637832)
chr7 (75-222)||(4864755-4864899)
chr7 (96-203)||(4644541-4644648)
chr7 (50-221)||(4654327-4654498)
chr7 (50-221)||(4696274-4696442)
chr7 (59-221)||(4673534-4673699)
chr7 (50-222)||(4663526-4663698)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4815305 - 4815526
Alignment:
Q  1 ccacaaatttcaatgtaacaccacccttctacacttccttttccttcacctattatttcctctaattgctagttcatacaaccctgattacagtttagcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4815305 ccacaaatttcaatgtaacaccacccttctacacttccttttccttcacctattatttcctctaattgctagttcatacaaccctgattacagtttagcc 4815404  T
Q  101 atcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactctaatctcttttccttcattgaaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4815405 atcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactctaatctcttttccttcattgaaccaa 4815504  T
Q  201 aaaatacaaacccatctcttaa 222  Q
    ||||||||||||||||||||||    
T  4815505 aaaatacaaacccatctcttaa 4815526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4782876 - 4783097
Alignment:
Q  1 ccacaaatttcaatgtaacaccacccttctacacttccttttccttcacctattatttcctctaattgctagttcatacaaccctgattacagtttagcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4782876 ccacaaatttcaatgtaacaccacccttctacacttccttttccttcacctattatttcctctaattgctatttcatacaaccctgattacagtttagcc 4782975  T
Q  101 atcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactctaatctcttttccttcattgaaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4782976 atcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactctaatctcttttccttcattgaaccaa 4783075  T
Q  201 aaaatacaaacccatctcttaa 222  Q
    ||||||||||||||||||||||    
T  4783076 aaaatacaaacccatctcttaa 4783097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 4711186 - 4711349
Alignment:
Q  59 cctctaattgctagttcatacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttg 158  Q
    |||||| ||||||  ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||| | ||||||||||||| ||    
T  4711186 cctctagttgctaactcatacaaccctgattacaatttagccatcaattgtggcttctcaacaaacactactgccttagatagtcgaatttgggttggtg 4711285  T
Q  159 ataacattgataactctaatctcttttccttcattgaaccaaaaaatacaaacccatctcttaa 222  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||    
T  4711286 ataatattgataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaa 4711349  T

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Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 4845129 - 4845277
Alignment:
Q  74 tcatacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataact 173  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||||||| |  |||||| |||  |||||||||| ||| |||||| ||||||||||    
T  4845129 tcatacaaccctgattacaatttagccatcaattgtggttcctcaacaaacaatgttgccttagataaacgaatttggattggtgataatattgataact 4845228  T
Q  174 ctaatctcttttccttcattgaaccaaaaaatacaaacccatctcttaa 222  Q
    | ||||||||| ||||||||||||||||||  ||||| |||||| ||||    
T  4845229 caaatctctttaccttcattgaaccaaaaaccacaaatccatcttttaa 4845277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 4637832 - 4637682
Alignment:
Q  74 tcatacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataact 173  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||  ||| ||||||||| |||  |||||||||||||| |||||| ||| |||||     
T  4637832 tcatacaaccctgattacaatttagccatcaattgtggctccttaaccgacaatactgccttagataaacgaatttgggttggtgataatattaataaca 4637733  T
Q  174 ctaatctcttttccttcattgaaccaaaaaatacaaacccatctcttaatg 224  Q
      ||||||||| | ||||||||||||||||  |||||||||||| ||||||    
T  4637732 aaaatctctttactttcattgaaccaaaaaccacaaacccatcttttaatg 4637682  T

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Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 4864899 - 4864755
Alignment:
Q  75 catacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactc 174  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||   ||| |||  |||||||||||||| |||||| |||||||||      
T  4864899 catacagccctgatttcagtttagccatcggttgtggctcctcaacaaatactac---cttagataaacgaatttgggttggtgataatattgataacaa 4864803  T
Q  175 taatctcttttccttcattgaaccaaaaaatacaaacccatctcttaa 222  Q
     ||||||||| | |||||||||| |||||  |||||||||||||||||    
T  4864802 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaa 4864755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 4644648 - 4644541
Alignment:
Q  96 tagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactctaatctcttttccttcattga 195  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||| | ||||||||||||| |||||| | ||||||| | || |||||| | ||||||||    
T  4644648 tagccattagttgtggctcctcaacgaacactactgccttagatagtcgaatttgggttggtgataataatgataacacaaaactctttactttcattga 4644549  T
Q  196 accaaaaa 203  Q
    ||||||||    
T  4644548 accaaaaa 4644541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 4654498 - 4654327
Alignment:
Q  50 ctattatttcctctaattgctagttcatacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaattt 149  Q
    ||||| || ||||||||||||   ||||||||||||||||||| |||||| |||  ||||||||||  |||| |||||||| |||| |||  ||||||||    
T  4654498 ctattgttccctctaattgcttactcatacaaccctgattacaatttagctatcgattgtggctccctaacagacactactaccttagataaacgaattt 4654399  T
Q  150 gggttgttgataacattgataactctaatctcttttccttcattgaaccaaaaaatacaaacccatctctta 221  Q
    || ||| ||| || |||||||||   ||| ||||| | ||||||||||||||||  || |||||||||||||    
T  4654398 ggattggtgagaatattgataacaaaaatatctttactttcattgaaccaaaaaccacgaacccatctctta 4654327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 4696274 - 4696442
Alignment:
Q  50 ctattatttcctctaattgctagttcatacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaattt 149  Q
    ||||| || |||||| ||||||  |||||| |||||  ||||| ||||||||||| ||||||||||||| || |||||||   ||| ||   |||||| |    
T  4696274 ctattgttccctctagttgctacctcatacgaccctatttacaatttagccatcaattgtggctcctcatcagacactac---cttcgacaaacgaatat 4696370  T
Q  150 gggttgttgataacattgataactctaatctcttttccttcattgaaccaaaaaatacaaacccatctctta 221  Q
    |||||| |||||| | ||||||| | || ||||||||||||| |||||||||||  |||||| |||||||||    
T  4696371 gggttggtgataataatgataacacaaaactcttttccttcaatgaaccaaaaaccacaaacacatctctta 4696442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 4673699 - 4673534
Alignment:
Q  59 cctctaattgctagttcatacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttg 158  Q
    |||||| ||||||  |||||||| ||   ||||| ||||||||||| |||||| ||||||||||||| | || |||| |||   ||||| ||||||| ||    
T  4673699 cctctagttgctacctcatacaaaccaatttacaatttagccatcaattgtggttcctcaacaaacaatgctaccttcgataaccgaatgtgggttggtg 4673600  T
Q  159 ---ataacattgataactctaatctcttttccttcattgaaccaaaaaatacaaacccatctctta 221  Q
       |||| ||| ||||| | ||||||||| | ||||||||||||||||  ||| ||||||||||||    
T  4673599 ataataatattaataacacaaatctctttactttcattgaaccaaaaaccacatacccatctctta 4673534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 4663698 - 4663526
Alignment:
Q  50 ctattatttcctctaattgctagttcatacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaattt 149  Q
    ||||| || |||||||||||||  |||||||||||   ||||| |||||||||||||||||| |||   | ||||| ||||| ||  || | | ||||||    
T  4663698 ctattgttccctctaattgctacctcatacaacccaatttacaatttagccatcagttgtggttccgatataaacaatactgactcggacgaaggaattt 4663599  T
Q  150 gggttgttgataacattgataactctaatctcttttccttcattgaaccaaaaaatacaaacccatctcttaa 222  Q
    |||||| |||||| | ||||||| |  | |||||||| ||| |||| |||||||  | ||| |||||||||||    
T  4663598 gggttggtgataataatgataacacagaactcttttctttccttgagccaaaaacaaaaaatccatctcttaa 4663526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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