View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_1 (Length: 830)
Name: NF0750_low_1
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 316 - 801
Target Start/End: Original strand, 42999541 - 43000026
Alignment:
| Q |
316 |
tgttcgtccaaattgaacaattgtttcatcacgaannnnnnnaaaacaaaacgatagtctttcacattcactcatctatccactaccnnnnnnntaaaac |
415 |
Q |
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| T |
42999541 |
tgttcgtctaaattgaacaattgtttcatcacgaatttttttgaaacaaaacgatagtctttcacattcactcatctatccactaccaaaaaaataaaac |
42999640 |
T |
|
| Q |
416 |
atgaagatgtatcaaatttaataatagccagaagggtcatattgttatgagtgctttccaatggaattaccagcgaagttaaactcctcagtctcggagg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42999641 |
atgaagatgtatcaaatttaataatagccagaagggtcatattgttgtgagtgctttccaatggaattaccagcgaagttaaactcctcagtctcagagg |
42999740 |
T |
|
| Q |
516 |
aattaccttcttggcagttagtgctcaaataaccaatttgcttacaaagctcattcataagaggtggtggtagagatagttgttgtttttggacaattgt |
615 |
Q |
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| T |
42999741 |
aattaccttcttggcagttagtgctcaaataaccaatttgcttacaaagctcattcataagaggtggtggtagagatagttgttgattttggacaaatgt |
42999840 |
T |
|
| Q |
616 |
tactaggtattgtgctatatttatcagactctggacctgcttcaatgtatgagtggctagaacaccagacactttctccatgccaagtttgtcaaactgc |
715 |
Q |
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| T |
42999841 |
tactaggtattgtgctatatttatcagactctggacctgcttcaatgtatgagtggctagaacaccagacactttctccatgccaagtttgtcaaactgc |
42999940 |
T |
|
| Q |
716 |
aactggtatttgatgaaggccatatcacctagcaaatcataagcctgtgtaggtttattctctcttaaaaatccaccaatagaaac |
801 |
Q |
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| T |
42999941 |
aactggtatttgatgaaggccatatcacctagcaaatcataagcctgtgtaggtttattctctcttaaaaatccaccaatagaaac |
43000026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 42999348 - 42999496
Alignment:
| Q |
126 |
cataggggtgaaatgaagtgggaaagggaggaggacattggtggtagaatcgaagatcattaccacgaaaatgagtttgaaatatcatattgttgtaata |
225 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42999348 |
cataggggtgaaatgaagtgggaaatggaggaggacattggtggtagaatcgaagatcattaccacgaaaatgagtttgaaatgtcatattgttgtaata |
42999447 |
T |
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| Q |
226 |
taaagcatgaacgccgacacacgatatgacacaaacatatggacaatac |
274 |
Q |
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| T |
42999448 |
taaagcatgaacaccgacacacgatatgacacaaacatatggacaatac |
42999496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42999886 - 42999932
Alignment:
| Q |
1 |
tgtatgagtggctagaacaccaggcactttctccatgccaagtttgt |
47 |
Q |
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| T |
42999886 |
tgtatgagtggctagaacaccagacactttctccatgccaagtttgt |
42999932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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