View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_103 (Length: 221)
Name: NF0750_low_103
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_103 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 44300603 - 44300751
Alignment:
| Q |
3 |
aaagttggaaaaggtgactg-agaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgcc |
101 |
Q |
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| T |
44300603 |
aaagttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgcc |
44300702 |
T |
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| Q |
102 |
gaagtaatctcaatcgccgtctccgtagatccagtctctttcatatcac |
150 |
Q |
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| T |
44300703 |
gaagtaatctcaatcgccgtcgccgtagatccagtctctttgatatcac |
44300751 |
T |
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Target: scaffold0036 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 99893 - 100021
Alignment:
| Q |
22 |
gagaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgt |
121 |
Q |
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| T |
99893 |
gagaggaatctcaaggaactatgtgaaaacaagaacgcctatgcaggttgcaagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgt |
99992 |
T |
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| Q |
122 |
ctccgtagatccagtctctttcatatcac |
150 |
Q |
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| T |
99993 |
cgccgtagatccagtctatttgatatcac |
100021 |
T |
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Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 38404303 - 38404431
Alignment:
| Q |
22 |
gagaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgt |
121 |
Q |
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| T |
38404303 |
gagaggaatctcaaggaactatgtgaaaacaagaacgccttcgcaggttgcaagtcatgctcagaagtactttctctgccgaagtaatcgcaattgctgt |
38404402 |
T |
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| Q |
122 |
ctccgtagatccagtctctttcatatcac |
150 |
Q |
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| T |
38404403 |
cgccatagatccagtctctttgatatcac |
38404431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 36236242 - 36236165
Alignment:
| Q |
73 |
aagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttcatatcac |
150 |
Q |
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| T |
36236242 |
aagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtctttttgatatcac |
36236165 |
T |
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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 31232234 - 31232311
Alignment:
| Q |
73 |
aagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttcatatcac |
150 |
Q |
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| T |
31232234 |
aagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtctttttgatatcac |
31232311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 33814277 - 33814368
Alignment:
| Q |
22 |
gagaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgt |
121 |
Q |
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| T |
33814277 |
gagaagaatctcaaggaactatgtgaaaacaagaacgcctacgc--------agtcatgctcagaagtactttctccgcctaagtaatttcaatcgccgt |
33814368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 33873747 - 33873838
Alignment:
| Q |
22 |
gagaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgt |
121 |
Q |
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| T |
33873747 |
gagaagaatctcaaggaactatgtgaaaacaagaacgcctacgc--------agtcatgctcagaagtactttctccgcctaagtaatttcaatcgccgt |
33873838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 16190171 - 16190315
Alignment:
| Q |
4 |
aagttggaaaaggtgactg-agaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccg |
102 |
Q |
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||||||| |||||||| || |||||||| || || |||| ||||||||| || | || || ||||||||||||||||||| |||||| || |||||||| |
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| T |
16190171 |
aagttggtaaaggtgattggagaggaatttctagaaactttgtgaaaactaggacaccaactcaggttgcaagtcatgctcagaagtatttcctccgccg |
16190270 |
T |
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| Q |
103 |
aagtaatctcaatcgccgtctccgtagatccagtctctttcatat |
147 |
Q |
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||| | |||||||| | ||| ||||||||||||||| |||| |
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| T |
16190271 |
tcataaccagaatcgccgccgccggagatccagtctctttgatat |
16190315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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