View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_12 (Length: 511)

Name: NF0750_low_12
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_12
NF0750_low_12
[»] chr4 (4 HSPs)
chr4 (82-511)||(2244435-2244852)
chr4 (329-396)||(10430721-10430788)
chr4 (329-395)||(54780297-54780363)
chr4 (82-118)||(25725928-25725964)
[»] chr7 (5 HSPs)
chr7 (187-401)||(47261822-47262030)
chr7 (272-401)||(35406185-35406311)
chr7 (82-119)||(47261780-47261817)
chr7 (187-258)||(23071668-23071742)
chr7 (82-118)||(23071628-23071664)
[»] chr5 (5 HSPs)
chr5 (187-401)||(9718127-9718335)
chr5 (187-401)||(15928200-15928408)
chr5 (82-119)||(9718340-9718377)
chr5 (82-119)||(15928413-15928450)
chr5 (329-396)||(23284729-23284796)
[»] chr8 (1 HSPs)
chr8 (300-375)||(34546425-34546500)
[»] chr1 (5 HSPs)
chr1 (82-119)||(1803274-1803311)
chr1 (187-401)||(1803316-1803524)
chr1 (83-117)||(4976724-4976758)
chr1 (334-396)||(21741032-21741094)
chr1 (83-117)||(23182920-23182954)
[»] chr3 (2 HSPs)
chr3 (154-191)||(31215940-31215977)
chr3 (336-396)||(54577634-54577694)
[»] chr6 (1 HSPs)
chr6 (337-396)||(19740350-19740409)
[»] chr2 (2 HSPs)
chr2 (272-395)||(38987991-38988111)
chr2 (329-381)||(40446095-40446147)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 82 - 511
Target Start/End: Complemental strand, 2244852 - 2244435
Alignment:
Q  82 atcaagagcatcccaatttcttggatcaaatatatcaaacaaatgttcagatgggtttccatgctctacattgtcattaacattatcctccagattatca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244852 atcaagagcatcccaatttcttggatcaaatatatcaaacaaatgttcagatgggtttccatgctctacattgtcattaacattatcctccagattatca 2244753  T
Q  182 tcttcattattcaaattaacatcatcaccattaacatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacat 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2244752 tcttcattattcaaattaacatcatcaccattaacatcacctctattttccaaatcaacactttcattctccatattactcttctcagttgtaaccacat 2244653  T
Q  282 tttcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttg 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244652 tttcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttg 2244553  T
Q  382 agattgaataaactcttcaagnnnnnnnnnnnncttacgtttctcatatccggatccatattttctaatcttaggaggaatcttaggaggcatattgaga 481  Q
    |||||||||||||||||||||            |||||||||||||||||||||| |||| |||||            || |||||||||||||||||||    
T  2244552 agattgaataaactcttcaagttttttctttttcttacgtttctcatatccggattcatactttct------------aaacttaggaggcatattgaga 2244465  T
Q  482 aaagaattcagaacctgaaatttgtcactc 511  Q
    ||||||||||||||||||||||||||||||    
T  2244464 aaagaattcagaacctgaaatttgtcactc 2244435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 10430721 - 10430788
Alignment:
Q  329 tcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactc 396  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||| |||| |||| ||| |||||    
T  10430721 tcaataggaatttgtgtttcttttacaataaatttatcaagagctcctgtttgggattcaattaactc 10430788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 54780363 - 54780297
Alignment:
Q  329 tcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaact 395  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||| |||| |||| ||| ||||    
T  54780363 tcaaaaggaatttgtgtttcttttacaataaatttatcaagagctcctgtttgggattcaattaact 54780297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 25725928 - 25725964
Alignment:
Q  82 atcaagagcatcccaatttcttggatcaaatatatca 118  Q
    |||||||||||| |||||||||||||||| |||||||    
T  25725928 atcaagagcatctcaatttcttggatcaagtatatca 25725964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 401
Target Start/End: Original strand, 47261822 - 47262030
Alignment:
Q  187 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacattt 283  Q
    |||||||||||||||||||||| || |    |||||| |||||||||||  |||||||||||||||||| ||||    |||   |   ||||||||||||    
T  47261822 attattcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat----cttg--aacagtaaccacattt 47261915  T
Q  284 tcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaagagctcctcttt 380  Q
    ||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   ||||||||||| | ||| |||| |||||||||| |||    
T  47261916 tcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctccttttt 47262009  T
Q  381 gagattgaataaactcttcaa 401  Q
    |||||||||| |||| |||||    
T  47262010 gagattgaattaacttttcaa 47262030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 401
Target Start/End: Original strand, 35406185 - 35406311
Alignment:
Q  272 gtaaccacattttcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaa 368  Q
    ||||||||||||||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   ||||||||||| | ||| |||| ||    
T  35406185 gtaaccacattttcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaa 35406278  T
Q  369 gagctcctctttgagattgaataaactcttcaa 401  Q
    |||||||| ||||||||||||| |||| |||||    
T  35406279 gagctcctttttgagattgaatgaacttttcaa 35406311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 47261780 - 47261817
Alignment:
Q  82 atcaagagcatcccaatttcttggatcaaatatatcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47261780 atcaagagcatcccaatttcttggatcaaatatatcaa 47261817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 23071668 - 23071742
Alignment:
Q  187 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatatt 258  Q
    ||||||||||||||||||||||  | |    |||||||||||||||| |  ||||||||||||||||||||||||    
T  23071668 attattcaaattaacatcatcaataatgggcacatcacctctatttttctgatcaacactttcattctccatatt 23071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 23071628 - 23071664
Alignment:
Q  82 atcaagagcatcccaatttcttggatcaaatatatca 118  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  23071628 atcaagagcatcctaattttttggatcaaatatatca 23071664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 401
Target Start/End: Complemental strand, 9718335 - 9718127
Alignment:
Q  187 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacattt 283  Q
    |||||||||||||||||||||| || |    |||||| |||||||||||  |||||||||||||||||| ||||    |||   |   ||||||||||||    
T  9718335 attattcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat----cttg--aacagtaaccacattt 9718242  T
Q  284 tcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaagagctcctcttt 380  Q
    ||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   ||||||||||| | ||| |||| |||||||||| |||    
T  9718241 tcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctccttttt 9718148  T
Q  381 gagattgaataaactcttcaa 401  Q
    |||||||||| |||| |||||    
T  9718147 gagattgaattaacttttcaa 9718127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 401
Target Start/End: Complemental strand, 15928408 - 15928200
Alignment:
Q  187 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacattt 283  Q
    |||||||||||||||||||||| || |    |||||| |||||||||||  |||||||||||||||||| ||||    |||   |   ||||||||||||    
T  15928408 attattcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat----cttg--aacagtaaccacattt 15928315  T
Q  284 tcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaagagctcctcttt 380  Q
    ||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   ||||||||||| | ||| |||| |||||||||| |||    
T  15928314 tcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctccttttt 15928221  T
Q  381 gagattgaataaactcttcaa 401  Q
    |||||||||| |||| |||||    
T  15928220 gagattgaattaacttttcaa 15928200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 9718377 - 9718340
Alignment:
Q  82 atcaagagcatcccaatttcttggatcaaatatatcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9718377 atcaagagcatcccaatttcttggatcaaatatatcaa 9718340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 15928450 - 15928413
Alignment:
Q  82 atcaagagcatcccaatttcttggatcaaatatatcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15928450 atcaagagcatcccaatttcttggatcaaatatatcaa 15928413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 23284729 - 23284796
Alignment:
Q  329 tcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactc 396  Q
    |||| ||||||||||| |||||||| || |||||| |||||||||||| |||| |||| ||| |||||    
T  23284729 tcaataggaatttgtgtttcttttacaataaatttttcaagagctcctgtttgggattcaattaactc 23284796  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 375
Target Start/End: Original strand, 34546425 - 34546500
Alignment:
Q  300 caacattaacattaccgacattctgattttcaacaggaatttgtggttcttttataagaaatttatcaagagctcc 375  Q
    |||||||  ||||| | |||||||||||||| | |||||||||| ||| |||||||| ||||||||||||||||||    
T  34546425 caacattgtcattatcaacattctgattttcgaaaggaatttgttgtttttttataacaaatttatcaagagctcc 34546500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 1803274 - 1803311
Alignment:
Q  82 atcaagagcatcccaatttcttggatcaaatatatcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1803274 atcaagagcatcccaatttcttggatcaaatatatcaa 1803311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 401
Target Start/End: Original strand, 1803316 - 1803524
Alignment:
Q  187 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacattt 283  Q
    |||||||||||||||||||||| || |    |||||| |||||||||||  |||||||||||||||||| ||||  || |   ||||   ||||||||||    
T  1803316 attattcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat--ct-tgaacaga---aaccacattt 1803409  T
Q  284 tcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaagagctcctcttt 380  Q
    ||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   || | |||||| | ||| |||| |||||||||| |||    
T  1803410 tcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggatattttatcaaaaacttattaagagctccttttt 1803503  T
Q  381 gagattgaataaactcttcaa 401  Q
    |||||||||| |||| |||||    
T  1803504 gagattgaattaacttttcaa 1803524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 4976724 - 4976758
Alignment:
Q  83 tcaagagcatcccaatttcttggatcaaatatatc 117  Q
    ||||||| |||||||||||||||||||||||||||    
T  4976724 tcaagagaatcccaatttcttggatcaaatatatc 4976758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 21741032 - 21741094
Alignment:
Q  334 aggaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactc 396  Q
    ||||||||||  |||||||| || ||||||||||||||||||| |||| |||| ||| |||||    
T  21741032 aggaatttgtatttcttttaaaataaatttatcaagagctcctgtttgggattcaattaactc 21741094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 23182954 - 23182920
Alignment:
Q  83 tcaagagcatcccaatttcttggatcaaatatatc 117  Q
    ||||||| |||||||||||||||||||||||||||    
T  23182954 tcaagagaatcccaatttcttggatcaaatatatc 23182920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 31215977 - 31215940
Alignment:
Q  154 gtcattaacattatcctccagattatcatcttcattat 191  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31215977 gtcattaacattatcctctagattatcatcttcattat 31215940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 54577634 - 54577694
Alignment:
Q  336 gaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactc 396  Q
    ||||||||| |||||||| || ||||||||||||||||| | |||| |||| ||| |||||    
T  54577634 gaatttgtgtttcttttacaataaatttatcaagagctcatgtttgggattcaattaactc 54577694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 396
Target Start/End: Original strand, 19740350 - 19740409
Alignment:
Q  337 aatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactc 396  Q
    |||||||| |||||||| || ||||||||||||||||||| |||| |||| ||| |||||    
T  19740350 aatttgtgtttcttttacaataaatttatcaagagctcctgtttgggattcaattaactc 19740409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 395
Target Start/End: Complemental strand, 38988111 - 38987991
Alignment:
Q  272 gtaaccacattttcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaa 368  Q
    |||||| |||||||||||| | |||||||||||||| ||      ||||| | |||||| | | ||||||||   ||||||||||| | ||| |||| ||    
T  38988111 gtaaccgcattttcaagaactccaacatcaacattatca------acattttcattttcgataagaatttgttgcggttcttttatcaaaaacttattaa 38988018  T
Q  369 gagctcctctttgagattgaataaact 395  Q
    |||||||| ||||||||||||| ||||    
T  38988017 gagctcctttttgagattgaattaact 38987991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 40446147 - 40446095
Alignment:
Q  329 tcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttg 381  Q
    |||| ||||||||||| |||||||| || ||| ||||||||||||||| ||||    
T  40446147 tcaataggaatttgtgtttcttttacaataaaattatcaagagctcctgtttg 40446095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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