View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_18 (Length: 464)
Name: NF0750_low_18
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 30 - 412
Target Start/End: Original strand, 16031626 - 16032010
Alignment:
| Q |
30 |
tgaacatagtaatatgggtgcaataggggaggcaattgtgaatttgtggaacgacacctatttgtgggagaaaggataacattttaaaatatagataaat |
129 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16031626 |
tgaacatagtaatatggatgcaataggggacgcaattgtgaatttgtggaacgacacctatttgtgggagaaaggataacattttaaaatatagataaat |
16031725 |
T |
|
| Q |
130 |
tgtaatgttgaagaaacattgttgggttgctctgtctagtttgtttaaggtgatagagccctctacaatattacaaatataaaaagaaaaataatttgaa |
229 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16031726 |
tgtaatgttgaagaaactttgttgggttgctctgtctagtttgtttaaggtgatagagccctctacaatattacaaatataaaaagaaaaataatttgaa |
16031825 |
T |
|
| Q |
230 |
ctcgaataggacggtagctgagaaaataaagatgaatggatactctcaactttatatacttcaattaatttgacctttgggttgtaatcaacctttggaa |
329 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16031826 |
ctcgaataggacggtagctgagaaaataaggatgaatggatactctccactttatatacttcaattaatttgacctttgggttgtaatcaacctttggaa |
16031925 |
T |
|
| Q |
330 |
ag-gaaaacaaaacttagtattgggaaacgaagggatccatt-ttaatgtgatgagagattagtcaaacttggaagaagtgttaa |
412 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16031926 |
agagaaaaaaaaacttagtattgggaaacgaagggatccattgttaatgtgatgagagattagtcaaacttggaagaagtgttaa |
16032010 |
T |
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