View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_19 (Length: 464)

Name: NF0750_low_19
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_19
NF0750_low_19
[»] chr1 (3 HSPs)
chr1 (97-451)||(27424739-27425093)
chr1 (98-451)||(27403713-27404064)
chr1 (140-189)||(27449901-27449950)
[»] chr7 (1 HSPs)
chr7 (377-420)||(31924434-31924477)
[»] chr8 (1 HSPs)
chr8 (375-404)||(9653522-9653551)
[»] chr2 (1 HSPs)
chr2 (372-405)||(35722994-35723027)
[»] chr5 (1 HSPs)
chr5 (376-420)||(43035932-43035976)
[»] chr3 (3 HSPs)
chr3 (376-420)||(740883-740927)
chr3 (376-420)||(8091420-8091464)
chr3 (370-406)||(26643300-26643336)


Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 97 - 451
Target Start/End: Complemental strand, 27425093 - 27424739
Alignment:
Q  97 atcaccgagatataaaatgtttacctgagggtacactgatgctagatatgatgcttcctttgagaatggataggatgcatgtaaaagaacaatccgagat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27425093 atcaccgagatataaaatgtttacctgagggtacactgatgctagatatgatgcttcctttgagaatggataggatgcatgtaaaagaacaatccgagat 27424994  T
Q  197 tttgaatatttcttttcctcgaaaactgaacggagatgaagaggattcgccagtcgcatatccaaatctttatcaccaaggctaattacataaaggtaag 296  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||    
T  27424993 tttgaatatttcttgtcctcaaaaattgaacggagatgaagaggattcgccagtcgcatatccaaatctttatcgcgaaagctaattacataaaggtaag 27424894  T
Q  297 tttagtatttacataaaagtagaattcctagcaagaagaaaattattatatctatattaatacatctaacaaaatactagtaataatttaagaaaataga 396  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27424893 tttagtatttacataaaagtagaattcctagtatgaagaaaattattatatctatattaatacatctaacaaaatactagtaataatttaagaaaataga 27424794  T
Q  397 atgattgaatataataacatgtgtatctgaaaattgaaaaccatttcattaccct 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27424793 atgattgaatataataacatgtgtatctgaaaattgaaaaccatttcattaccct 27424739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 98 - 451
Target Start/End: Complemental strand, 27404064 - 27403713
Alignment:
Q  98 tcaccgagatataaaatgtttacctgagggtacactgatgctagatatgatgcttcctttgagaatggataggatgcatgtaaaagaacaatccgagatt 197  Q
    |||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  27404064 tcactgagttatgaaatgtttacctgagggtacacagatgctagatatgatgcttcccttgagaatggataggatgcatgtaaaagaacgatccgagatt 27403965  T
Q  198 ttgaatatttcttttcctcgaaaactgaacggagatgaagaggattcgccagtcgcatatccaaatctttatcaccaaggctaattacataaaggtaagt 297  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||  ||||||||  ||||| || |    
T  27403964 ttgagtatctcttgtcctcgaaaactgaacggagatgaagaggatttgcgagtcgcatatccaaatctttgtccccaaacctaattaccgaaagggaaat 27403865  T
Q  298 ttagtatttacataaaagtagaattcctagcaagaagaaaattattatatctatattaatacatctaacaaaatactagtaataatttaagaaaatag-a 396  Q
    ||||||||||  |||||||||  || | || || | |||||| ||  |||||||  | | ||||| ||||  | ||  |||||||||||||||||||| |    
T  27403864 ttagtatttaggtaaaagtagtgttacaagtaaaaggaaaatcatggtatctat-ctcagacatcaaacatgacaccggtaataatttaagaaaatagaa 27403766  T
Q  397 atgattgaatataataacatgtgtatctgaaaattgaaaaccatttcattaccct 451  Q
    ||| | | || ||| |||  |||||||||| ||||||| ||||||||||||||||    
T  27403765 atggtcgcatgtaaaaac--gtgtatctgagaattgaagaccatttcattaccct 27403713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 27449950 - 27449901
Alignment:
Q  140 agatatgatgcttcctttgagaatggataggatgcatgtaaaagaacaat 189  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  27449950 agatatgatgcttcctttgagaatggatatgatgtatgtaaaagaacaat 27449901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 420
Target Start/End: Original strand, 31924434 - 31924477
Alignment:
Q  377 taataatttaagaaaatagaatgattgaatataataacatgtgt 420  Q
    |||||||||||||||||||||  |||||||||||| ||||||||    
T  31924434 taataatttaagaaaatagaacaattgaatataatcacatgtgt 31924477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 404
Target Start/End: Original strand, 9653522 - 9653551
Alignment:
Q  375 agtaataatttaagaaaatagaatgattga 404  Q
    ||||||||||||||||||||||||||||||    
T  9653522 agtaataatttaagaaaatagaatgattga 9653551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 35722994 - 35723027
Alignment:
Q  372 actagtaataatttaagaaaatagaatgattgaa 405  Q
    |||||||||||||||||||||| |||||||||||    
T  35722994 actagtaataatttaagaaaatggaatgattgaa 35723027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 43035976 - 43035932
Alignment:
Q  376 gtaataatttaagaaaatagaatgattgaatataataacatgtgt 420  Q
    ||||||||||||||||||| ||| ||||||| ||| |||||||||    
T  43035976 gtaataatttaagaaaatataattattgaatgtaagaacatgtgt 43035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 740883 - 740927
Alignment:
Q  376 gtaataatttaagaaaatagaatgattgaatataataacatgtgt 420  Q
    ||||||||||||||||||| ||| ||||||| ||| |||||||||    
T  740883 gtaataatttaagaaaatataattattgaatgtaagaacatgtgt 740927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 8091464 - 8091420
Alignment:
Q  376 gtaataatttaagaaaatagaatgattgaatataataacatgtgt 420  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  8091464 gtaataatttaagaaaataggattattgaatgtaattacatgtgt 8091420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 26643336 - 26643300
Alignment:
Q  370 atactagtaataatttaagaaaatagaatgattgaat 406  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  26643336 atactggtaataatttaagaaaatagaataattgaat 26643300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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