View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0750_low_21 (Length: 453)
Name: NF0750_low_21
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_21 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 30 - 443
Target Start/End: Complemental strand, 31130189 - 31129776
Alignment:
| Q |
30 |
accctgtggatcaatcatattaaaaacagggaaaaaatcaaccaagtttggagttcctattgccctcacaagattttcaactatccctttatattcatca |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
31130189 |
accctgtggatcaatcatcttaaaaacagggaaaaaatcaaccaagtttggagttcctattgccctcacaaggttttcaactatacctttatattcatca |
31130090 |
T |
|
| Q |
130 |
gtttcacctgcagagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31130089 |
gtttcacctgcagagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcac |
31129990 |
T |
|
| Q |
230 |
caattaagctgcttttttctatatcacttaaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagtttggctagaaaataattggtt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
31129989 |
caattaagctgcttttttctatatcacttaaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagtttggctagaaaacaattggtt |
31129890 |
T |
|
| Q |
330 |
tttgcatatttttcttaggtctctccaaagatcacaaactggcataaagggtaagctaaaatagtcgtgatcgagaaccgcgacggcttgaggaattgtt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31129889 |
tttgcatatttttcttaggtctctccaaagatcacaaactggcataaagggtaagctaaaatagtcgtgatcgagaaccgcgacggcttgaggaattgtt |
31129790 |
T |
|
| Q |
430 |
ctatttgagaataa |
443 |
Q |
| |
|
|||||||||||||| |
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|
| T |
31129789 |
ctatttgagaataa |
31129776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 34 - 391
Target Start/End: Original strand, 31137006 - 31137364
Alignment:
| Q |
34 |
tgtggatcaatcatattaaaaacagggaaaa-aatcaaccaagtttggagttcctattgccctcacaagattttcaactatccctttatattcatcagtt |
132 |
Q |
| |
|
|||||||||| ||| || |||| |||||||| |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
31137006 |
tgtggatcaaccatctttaaaaaagggaaaaaaatcaaccaagtttggtgttcctattgctctcacaagattttcaattatacctttatattcatcagtt |
31137105 |
T |
|
| Q |
133 |
tcacctgcagagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcaccaa |
232 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||| |||| |
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|
| T |
31137106 |
tctcctgcagagttaacaaaatccatagaaaaaaatgcgtttgacaaaaaattcaatgaagttttaaaaacagcttttccaacatcaacagcttccccaa |
31137205 |
T |
|
| Q |
233 |
ttaagctgcttttttctatatcacttaaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagtttggctagaaaataattggttttt |
332 |
Q |
| |
|
||||| | ||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| |
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|
| T |
31137206 |
ttaagttacttctatcaatatcacataaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggttttt |
31137305 |
T |
|
| Q |
333 |
gcatatttttcttaggtctctccaaagatcacaaactggcataaagggtaagctaaaat |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
31137306 |
gcatatttttcttaggtctctccaaagatcgcaaaccggcataaagggtaagctaaaat |
31137364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 34 - 391
Target Start/End: Complemental strand, 31152033 - 31151675
Alignment:
| Q |
34 |
tgtggatcaatcatattaaaaacagggaaaaaa-tcaaccaagtttggagttcctattgccctcacaagattttcaactatccctttatattcatcagtt |
132 |
Q |
| |
|
|||||||||| ||| || |||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
31152033 |
tgtggatcaaccatctttaaaaaagggaaaaaaatcaaccaagtttggtgttcctattgctctcacaagattttcaattatacctttatattcatcagtt |
31151934 |
T |
|
| Q |
133 |
tcacctgcagagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcaccaa |
232 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||| |||| |
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|
| T |
31151933 |
tctcctgcagagttaacaaaatccatagaaaaaaatgcgtttgacaaaaaattcaatgaagttttaaaaacagcttttccaacatcaacagcttccccaa |
31151834 |
T |
|
| Q |
233 |
ttaagctgcttttttctatatcacttaaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagtttggctagaaaataattggttttt |
332 |
Q |
| |
|
||||| | ||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| |
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|
| T |
31151833 |
ttaagttacttctatcaatatcacataaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggttttt |
31151734 |
T |
|
| Q |
333 |
gcatatttttcttaggtctctccaaagatcacaaactggcataaagggtaagctaaaat |
391 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
31151733 |
gcatatttttcgtaagtctctccaaagatcgcaaaccggcataaacggtaagctaaaat |
31151675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 34 - 441
Target Start/End: Original strand, 24484879 - 24485286
Alignment:
| Q |
34 |
tgtggatcaatcatattaaaaacagggaaaaaatcaaccaagtttggagttcctattgccctcacaagattttcaactatccctttatattcatcagttt |
133 |
Q |
| |
|
|||||||||| | | || ||||| || ||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
24484879 |
tgtggatcaaacttcttcaaaactggaaaaaaatcaaccacatttggtgttcctattgctctcacaagattttcaacaatatctttatactcatcagttt |
24484978 |
T |
|
| Q |
134 |
cacctgcagagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcaccaat |
233 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||| || | | |
|
|
| T |
24484979 |
cacctgtggagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagtagctcttccaacatctactgctttacaagt |
24485078 |
T |
|
| Q |
234 |
taagctgcttttttctatatcacttaaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagtttggctagaaaataattggtttttg |
333 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| | ||||||| || ||||||||| |
|
|
| T |
24485079 |
taagctgcttctatcaatatcacttaaaagctcttgaagcttcttacacctaagttcattactagcatcaagtgttttgttagaaaacaaatggtttttg |
24485178 |
T |
|
| Q |
334 |
catatttttcttaggtctctccaaagatcacaaactggcataaagggtaagctaaaatagtcgtgatcgagaaccgcgacggcttgaggaattgttctat |
433 |
Q |
| |
|
||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| || || ||||||||||||||||||| |
|
|
| T |
24485179 |
tataatttttttaggtctctccaaagatctgaaactggcataaagggtaagctaaaatgttgatgatcaagaactgctactgcttgaggaattgttctat |
24485278 |
T |
|
| Q |
434 |
ttgagaat |
441 |
Q |
| |
|
||||||| |
|
|
| T |
24485279 |
ctgagaat |
24485286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 52 - 430
Target Start/End: Original strand, 24468398 - 24468776
Alignment:
| Q |
52 |
aaaacagggaaaaaatcaaccaagtttggagttcctattgccctcacaagattttcaactatccctttatattcatcagtttcacctgcagagttaacaa |
151 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24468398 |
aaaatagggaaaaaatcaaccaagtttggtgttcctattgctgtcataagactttcaactatatctttatactcatcagtttcacctgcagagttaacaa |
24468497 |
T |
|
| Q |
152 |
aatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgcttttttctat |
251 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| | | ||||| || |||||||||| ||||| ||| | || || |
|
|
| T |
24468498 |
aatccatggagaaaaaagtgtttgacaaaacattcaacaaagtcttaaaagcagctttctcaacatccactgcttcaccaaccaagctacttctatcaat |
24468597 |
T |
|
| Q |
252 |
atcacttaaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagtttggctagaaaataattggtttttgcatatttttcttaggtct |
351 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||| | ||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
24468598 |
atcacataaaagctcttgcagcttcttacacctaagttcattgctagcatcaagagttttgttagaaaacaaattgtttttgcatatttttcttaggtct |
24468697 |
T |
|
| Q |
352 |
ctccaaagatcacaaactggcataaagggtaagctaaaatagtcgtgatcgagaaccgcgacggcttgaggaattgttc |
430 |
Q |
| |
|
|||||||||| | | ||||||||| ||||||||||||| || ||| | ||||| || || |||||||||||||||| |
|
|
| T |
24468698 |
ctccaaagatttgacattggcataaatggtaagctaaaatgttcatgaccaagaactgctacagcttgaggaattgttc |
24468776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 41128310 - 41128230
Alignment:
| Q |
165 |
aaaagtgtttgacaaaaaattcaatg-aagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgctttt |
245 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||| |||||||||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
41128310 |
aaaagtatatgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgctttt |
41128230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 41144371 - 41144451
Alignment:
| Q |
165 |
aaaagtgtttgacaaaaaattcaatg-aagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgctttt |
245 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||| |||||||||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
41144371 |
aaaagtatatgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgctttt |
41144451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 41119955 - 41120035
Alignment:
| Q |
165 |
aaaagtgtttgacaaaaaattcaatg-aagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgctttt |
245 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||| |||||||||||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
41119955 |
aaaagtatatgacaaaaaatt-aatgcaagccttgaaagcagctcttccaatatcaacagcttcaccggttaagctgctttt |
41120035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 29974972 - 29975024
Alignment:
| Q |
151 |
aaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagc |
203 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
29974972 |
aaatcaatagagaaaatagtgtttgacaacaaattgattgatgtcttaaaagc |
29975024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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