View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_23 (Length: 441)

Name: NF0750_low_23
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_23
NF0750_low_23
[»] chr1 (4 HSPs)
chr1 (1-432)||(27424392-27424823)
chr1 (10-409)||(27403396-27403787)
chr1 (77-168)||(27449600-27449691)
chr1 (290-366)||(27449301-27449377)
[»] chr7 (1 HSPs)
chr7 (11-54)||(31924434-31924477)
[»] chr2 (1 HSPs)
chr2 (4-39)||(35722992-35723027)
[»] chr3 (2 HSPs)
chr3 (4-54)||(8091420-8091470)
chr3 (10-54)||(740883-740927)
[»] chr8 (1 HSPs)
chr8 (9-38)||(9653522-9653551)
[»] chr4 (1 HSPs)
chr4 (3-40)||(44412352-44412389)
[»] chr5 (1 HSPs)
chr5 (10-54)||(43035932-43035976)


Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 27424823 - 27424392
Alignment:
Q  1 aaaacactagtaataatttaagaaaatagaatgattgaatataataacatgtgtatctgaaaattgaaaaccatttcattaccctgtgtgtatctgcatt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27424823 aaaatactagtaataatttaagaaaatagaatgattgaatataataacatgtgtatctgaaaattgaaaaccatttcattaccctgtgtgtatctgcatt 27424724  T
Q  101 ggcaagtcataggattgagcaacttccaaactttgcaagaagatgtagtcgataagattcttgtttgcaatacggataggctttccagctgaacatgtag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27424723 ggcaagtcataggattgagcaacttccaaactttgcaagaagatgtagtcgataagattcttgtttgcaatacggataggcttcccagctgaacatgtag 27424624  T
Q  201 aataatgactacgaataataccttgaaagttgaaacataacattttaaaaccaatatgcatattctactcacaaagtaacacttgtctgagaccctcctc 300  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27424623 aataatgaatacgaataataccttgaaagttgaaacagaacattttaaaacaaatatgcatattctactcacaaagtaacacttgtctgagaccctcctc 27424524  T
Q  301 agcatccttttcagtcacatttgtattgatttcaaggccactgcggtatgcagctatgcttttcaatccatagatttcagctgcagctattaaggtgtcg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27424523 agcatccttttcagtcacatttgtattgatttcaaggccactgcggtatgcagctatgcttttcaatccatagatttcagctgcagctgttaaggtgtcg 27424424  T
Q  401 ctaaggaacctaactaaatattggatattttt 432  Q
    ||||||||||||||||||||||||||||||||    
T  27424423 ctaaggaacctaactaaatattggatattttt 27424392  T

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Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 27403787 - 27403396
Alignment:
Q  10 gtaataatttaagaaaatagaa-tgattgaatataataacatgtgtatctgaaaattgaaaaccatttcattaccctgtgtgtatctgcattggcaagtc 108  Q
    |||||||||||||||||||||| || | | || ||| |||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  27403787 gtaataatttaagaaaatagaaatggtcgcatgtaaaaac--gtgtatctgagaattgaagaccatttcattaccctgtgtgtatctgcattggcaagtc 27403690  T
Q  109 ataggattgagcaacttccaaactttgcaagaagatgtagtcgataagattcttgtttgcaatacggataggctttccagctgaacatgtagaataatga 208  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||| |||||    
T  27403689 ataggattgagcaacatccagactttgcaagaagatgtagtcgataagattcttgtttgcaatacggacaggcttccgagctgaaaatgtagaacaatga 27403590  T
Q  209 ctacgaataataccttgaaagttgaaacataacattttaaaaccaatatgcatattctactcacaaagtaacacttgtctgagaccctcctcagcatcct 308  Q
     || ||| | ||||       |||||||| ||||||||||| |||||||||||||||||||||| ||||||||| |||| |||||| ||||| ||||| |    
T  27403589 gtatgaaaagtacc-------ttgaaacagaacattttaaagccaatatgcatattctactcaccaagtaacacctgtccgagaccttcctcggcatctt 27403497  T
Q  309 tttcagtcacatttgtattgatttcaaggccactgcggtatgcagctatgcttttcaatccatagatttcagctgcagctattaaggtgtcgctaaggaa 408  Q
      | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| | ||| || ||||| ||  |||||||||    
T  27403496 ggttagtgacatttgtattgatttctaggccactgcggtatgcagctatactttttaatccatagatctcaccagcaactgttaagctgatgctaaggaa 27403397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 27449691 - 27449600
Alignment:
Q  77 cattaccctgtgtgtatctgcattggcaagtcataggattgagcaacttccaaactttgcaagaagatgtagtcgataagattcttgtttgc 168  Q
    |||||||||||||||| ||||||||||||||||| |||||||| || |||||||||| |||||||||||||||| |  ||||| ||||||||    
T  27449691 cattaccctgtgtgtagctgcattggcaagtcatgggattgagaaaattccaaacttagcaagaagatgtagtcaaccagatttttgtttgc 27449600  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 27449377 - 27449301
Alignment:
Q  290 agaccctcctcagcatccttttcagtcacatttgtattgatttcaaggccactgcggtatgcagctatgcttttcaa 366  Q
    ||||| |||||||| ||||||| |||||| ||||||||||| || ||||||  |  |||||| ||||||||||||||    
T  27449377 agaccttcctcagcttcctttttagtcacctttgtattgatgtctaggccaaagtagtatgctgctatgcttttcaa 27449301  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 31924434 - 31924477
Alignment:
Q  11 taataatttaagaaaatagaatgattgaatataataacatgtgt 54  Q
    |||||||||||||||||||||  |||||||||||| ||||||||    
T  31924434 taataatttaagaaaatagaacaattgaatataatcacatgtgt 31924477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 35722992 - 35723027
Alignment:
Q  4 acactagtaataatttaagaaaatagaatgattgaa 39  Q
    |||||||||||||||||||||||| |||||||||||    
T  35722992 acactagtaataatttaagaaaatggaatgattgaa 35723027  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 8091470 - 8091420
Alignment:
Q  4 acactagtaataatttaagaaaatagaatgattgaatataataacatgtgt 54  Q
    ||||| |||||||||||||||||||| || ||||||| |||| ||||||||    
T  8091470 acactggtaataatttaagaaaataggattattgaatgtaattacatgtgt 8091420  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 740883 - 740927
Alignment:
Q  10 gtaataatttaagaaaatagaatgattgaatataataacatgtgt 54  Q
    ||||||||||||||||||| ||| ||||||| ||| |||||||||    
T  740883 gtaataatttaagaaaatataattattgaatgtaagaacatgtgt 740927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 9653522 - 9653551
Alignment:
Q  9 agtaataatttaagaaaatagaatgattga 38  Q
    ||||||||||||||||||||||||||||||    
T  9653522 agtaataatttaagaaaatagaatgattga 9653551  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 44412352 - 44412389
Alignment:
Q  3 aacactagtaataatttaagaaaatagaatgattgaat 40  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  44412352 aacaccagtaataatttgagaaaatagaatgattgaat 44412389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 43035976 - 43035932
Alignment:
Q  10 gtaataatttaagaaaatagaatgattgaatataataacatgtgt 54  Q
    ||||||||||||||||||| ||| ||||||| ||| |||||||||    
T  43035976 gtaataatttaagaaaatataattattgaatgtaagaacatgtgt 43035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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