View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_24 (Length: 427)

Name: NF0750_low_24
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_24
NF0750_low_24
[»] chr8 (11 HSPs)
chr8 (2-376)||(14090422-14090798)
chr8 (2-265)||(42277518-42277783)
chr8 (2-117)||(36831786-36831903)
chr8 (62-244)||(5339509-5339691)
chr8 (191-265)||(43095356-43095430)
chr8 (7-261)||(34662275-34662530)
chr8 (2-139)||(8269046-8269185)
chr8 (326-378)||(14126121-14126173)
chr8 (160-265)||(36831639-36831744)
chr8 (197-265)||(27470857-27470925)
chr8 (26-127)||(27470691-27470794)
[»] chr7 (11 HSPs)
chr7 (2-378)||(20216371-20216748)
chr7 (2-265)||(47247492-47247757)
chr7 (2-265)||(39973243-39973508)
chr7 (2-265)||(30712883-30713148)
chr7 (2-132)||(31188242-31188374)
chr7 (150-308)||(25783892-25784047)
chr7 (2-139)||(28244349-28244488)
chr7 (2-265)||(46271766-46272030)
chr7 (2-117)||(25783766-25783883)
chr7 (191-265)||(20221124-20221197)
chr7 (2-114)||(20219331-20219445)
[»] chr6 (2 HSPs)
chr6 (60-376)||(13681802-13682108)
chr6 (2-240)||(25062493-25062729)
[»] chr1 (7 HSPs)
chr1 (2-265)||(43628341-43628606)
chr1 (2-265)||(50543399-50543664)
chr1 (2-265)||(28793670-28793935)
chr1 (18-265)||(35065429-35065678)
chr1 (2-127)||(42097084-42097211)
chr1 (207-265)||(32298256-32298314)
chr1 (2-127)||(10885640-10885767)
[»] chr5 (6 HSPs)
chr5 (2-265)||(6658510-6658773)
chr5 (2-265)||(38364715-38364980)
chr5 (4-265)||(20828371-20828634)
chr5 (2-265)||(10014773-10015038)
chr5 (2-132)||(43453184-43453316)
chr5 (197-265)||(36339702-36339770)
[»] chr2 (2 HSPs)
chr2 (2-265)||(3408451-3408716)
chr2 (2-308)||(21638981-21639286)
[»] chr3 (7 HSPs)
chr3 (2-265)||(39347887-39348152)
chr3 (7-265)||(8626628-8626889)
chr3 (2-265)||(42722771-42723036)
chr3 (2-127)||(43722329-43722456)
chr3 (2-75)||(51897498-51897573)
chr3 (197-265)||(43722191-43722259)
chr3 (197-257)||(51897274-51897334)
[»] scaffold0009 (1 HSPs)
scaffold0009 (2-127)||(235319-235446)
[»] chr4 (2 HSPs)
chr4 (2-265)||(30844941-30845206)
chr4 (2-134)||(901535-901669)
[»] scaffold0695 (1 HSPs)
scaffold0695 (326-378)||(4456-4508)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 14090422 - 14090798
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  14090422 catcatcaagtgtcactgtcatcccccctaatgaaaggtggaaactcgaagtctcctcgtgtcacctctccacaaatgcacaaatcagattgtggtcaat 14090521  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||     
T  14090522 caggttgtagctggtatcatgaagccaagaaagaccggtgcgctgcattctgtcacgccaccaccgtgcatccatgatagaggtggtctgtttatcttgt 14090621  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaaacgatacctaaacatcagtttacactcatggcta 299  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| || ||||||||     
T  14090622 atcgcgtctatcttctttccgttgttgatgcattttaaatttccataccactgcaaataattgaaaacaatacctaaacatcagtttgcattcatggctt 14090721  T
Q  300 cacaaacagggcagttcaacaatttaacagtacataaacatcagcttcacaaatatcaaaaactattcacaatcatg 376  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||| |||||||||    
T  14090722 cacaaacagggcagttcaacaatttaacagtacataaacatcattttcacaaatatcaacaactatttacaatcatg 14090798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 42277783 - 42277518
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||| |||||||||||||| || |||||||||||||  |||||||| || || |||||||| |||   ||||||||    
T  42277783 catcatcaagtgtgactgtcatctccccaaacggaaggtggaagttggaagtctcctcgtgccacctctcaacgaaggcacaaattagaccatggtcaat 42277684  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || ||||||| ||||||| || ||||||  ||| | ||||   || | |||||    |||||||||| || |||||||| |  || | | || ||| |||    
T  42277683 catgctgtagttggtatcctggagccaaccaaggccggtgtcatgcaatttgttctcccaccaccgtccagccatgataaatttgttttcttcatcatgc 42277584  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||| ||||| |||||||| || |||||||||||||| ||||||  ||||| |||||||||||||    
T  42277583 atcgcttctattttctttccgttgttgatgcattttaattttccacgccactgcaaataattaaaa 42277518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 36831903 - 36831786
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||  | |||||||||||||  |||||||| ||||| ||||| |||| |   ||||||||    
T  36831903 catcatcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctctccacaaaggcacagatcaaaccatggtcaat 36831804  T
Q  100 caggctgtagctggtatc 117  Q
    || |||||||||||||||    
T  36831803 catgctgtagctggtatc 36831786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 5339691 - 5339509
Alignment:
Q  62 cacctctcgacaaatgcacaaatcagattgtggtcaatcaggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccacc 161  Q
    |||||||| ||||| ||||||||||||   |||||||||| | |||||||||| || || ||||||  ||| | ||||| ||| | |||||    |||||    
T  5339691 cacctctccacaaaggcacaaatcagaccatggtcaatcatgttgtagctggtgtcctggagccaaccaaggccggtgccctgtaatttgttctcccacc 5339592  T
Q  162 accgtgcatccatgatagagatggtctgtttatcttgcatcgcgtctatcttctttccattattgatgcattttaaatttcca 244  Q
    | |||||| |||||||||   |||| |  ||||| |||||||| |||||||||||||| || |||||||||||||| ||||||    
T  5339591 atcgtgcagccatgataggtctggtgtcattatcatgcatcgcttctatcttctttccgttgttgatgcattttaattttcca 5339509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 43095430 - 43095356
Alignment:
Q  191 ttatcttgcatcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||| |||||||| |||||||||||||| || |||||||||||||| ||||||  ||||| |||||||||||||    
T  43095430 ttatcatgcatcgcttctatcttctttccgttgttgatgcattttaattttccacgccactgcaaataattaaaa 43095356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 34662275 - 34662530
Alignment:
Q  7 tcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaatcaggc 104  Q
    |||||||| |||| |||| |||| ||||||||||||||  | ||||||| || ||  ||||| || ||||| ||||||||||||   |||||||||| |     
T  34662275 tcaagtgtgactg-catctccccaaacggaaggtggaagctggaagtcttcttgtgccacctttccacaaaggcacaaatcagaccatggtcaatcatgt 34662373  T
Q  105 tgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgcatcgc 204  Q
    |||||||||| || || ||||||  ||| | | ||| ||||| |||||    ||||||||||||| | |||||||   |||| |  ||||| ||| || |    
T  34662374 tgtagctggtgtcctggagccaaccaaggccgatgccctgaaatttgttctcccaccaccgtgcagcaatgataggtctggtgtcattatcatgcctcac 34662473  T
Q  205 gtctatcttctttccattattgatgcattttaaatttccataccactacaaataatt 261  Q
     |||||||||||||| || |||||||||||||| ||| ||  ||||| |||||||||    
T  34662474 ttctatcttctttccgttgttgatgcattttaatttttcacgccactgcaaataatt 34662530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 8269185 - 8269046
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    |||||| |||||| ||||||||| |||  || ||||| |||||  | || ||||||||||  ||||||||  |||||| | ||||||| | |||||||||    
T  8269185 catcattaagtgtcactgtcatctcccgaaatggaagatggaagcttgatgtctcctcgtgccacctctccgcaaatgtagaaatcaggtcgtggtcaat 8269086  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtg 139  Q
    | || ||||||||||||| | |||||||||||||| ||||    
T  8269085 ccggttgtagctggtatccttaagccaagaaagaccggtg 8269046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 14126121 - 14126173
Alignment:
Q  326 acagtacataaacatcagcttcacaaatatcaaaaactattcacaatcatgac 378  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||||||||    
T  14126121 acagtacataaacatcaatttcacaaatatcaacaactatttacaatcatgac 14126173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 36831744 - 36831639
Alignment:
Q  160 ccaccgtgcatccatgatagagatggtctgtttatcttgcatcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataa 259  Q
    |||||||||| |||||||||   |||| |  | ||| |||||| | |||||||||||||| || |||||||||||||| ||||||  ||| | |||||||    
T  36831744 ccaccgtgcagccatgataggtctggtgtcatcatcatgcatctcttctatcttctttccgttgttgatgcattttaattttccacgccattgcaaataa 36831645  T
Q  260 ttaaaa 265  Q
    ||||||    
T  36831644 ttaaaa 36831639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 27470857 - 27470925
Alignment:
Q  197 tgcatcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    |||||||| |||||||||||||  ||  ||||||||||||| ||||||  ||||| |||||||||||||    
T  27470857 tgcatcgcttctatcttctttctgttgatgatgcattttaattttccacgccactgcaaataattaaaa 27470925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 27470691 - 27470794
Alignment:
Q  26 cccctaacggaaggtggaaattcgaagtctcctc--gtcacctctcgacaaatgcacaaatcagattgtggtcaatcaggctgtagctggtatcatgaag 123  Q
    |||| ||||||||||||||  | |||||||||||  |||||||||| ||||| |||||   ||||   |||||||||| | ||||||||||||| || ||    
T  27470691 ccccaaacggaaggtggaagctggaagtctcctcgtgtcacctctccacaaaggcacaggccagaccatggtcaatcatgttgtagctggtatcctggag 27470790  T
Q  124 ccaa 127  Q
    ||||    
T  27470791 ccaa 27470794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 378
Target Start/End: Original strand, 20216371 - 20216748
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| | ||||||| |||| ||||||||||| ||| |||||||||||||||  |||||||| ||||||||| |||| |||  |||||||||    
T  20216371 catcatcaagtgtcattgtcatctccccaaacggaaggtgaaaactcgaagtctcctcgtaccacctctccacaaatgcagaaattagaccgtggtcaat 20216470  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || |||||||||||| || |||||||||||||||| ||||| ||| ||| ||||||||||||||| |||| ||||||||| | ||||||||||||| |||    
T  20216471 caagctgtagctggtgtcctgaagccaagaaagacaggtgccctgcattatgtcacgccaccaccatgcaaccatgataggggtggtctgtttatcatgc 20216570  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaaacgatacctaaacatcagtttacactcatggcta 299  Q
    ||||  |||||||||||||| || ||||||||| |||||||   | |||||| ||||||||||||||  |||| |||||||||||||||||||||||||     
T  20216571 atcgtttctatcttctttccgttgttgatgcatattaaattgtgacaccactgcaaataattaaaaataatacataaacatcagtttacactcatggctt 20216670  T
Q  300 cacaaacagggcagttcaacaatttaacagtacataaacatcagcttcacaaatatcaaaaactattcacaatcatgac 378  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| || ||||||| |||||||||||    
T  20216671 cacaaacagggcagttcaacaattt-acaatacataaacatcagtttcacaaatattaacaactatttacaatcatgac 20216748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 47247757 - 47247492
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    |||| |||||||| ||||||||| || | || |||||||||||  | |||||||||||||  |||||||| ||||| |||||||||||| | ||||||||    
T  47247757 catcgtcaagtgtgactgtcatctccacaaatggaaggtggaagctggaagtctcctcgtgccacctctccacaaaggcacaaatcagactatggtcaat 47247658  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | |||||||||| || || ||||||  ||| ||||||| ||| | |||||    ||||||||||||| |||||||||   |||| |  ||||| |||    
T  47247657 catgttgtagctggtgtcctggagccaaccaaggctggtgccctgcaatttgttctcccaccaccgtgcagccatgataggtctggtgtcattatcatgc 47247558  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||| |||||||||||| | || |||||||||||||| ||||||  ||||| |||||||||||||    
T  47247557 atcgcttctatcttcttttcgttgttgatgcattttaattttccacgccactgcaaataattaaaa 47247492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 39973508 - 39973243
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    |||| |||||||| | ||||||| |||| ||||||||||||||  | |||||||||||||  |||||||| |||||  |||||||||||   ||||||||    
T  39973508 catcgtcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtctcctcgtaccacctctccacaaagacacaaatcagaccatggtcaat 39973409  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | |||||||||| || |  ||||||  |||   ||||| ||| | |||||    ||||||||||||| |||||||||   |||| |  ||||| |||    
T  39973408 catgttgtagctggtgtccttgagccaaccaaggtcggtgccctgcaatttgttctcccaccaccgtgcagccatgataggtctggtgtcattatcatgc 39973309  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    || || |||||||||||||| || |||||||||||||| |||||| |||||| |||||||||||||    
T  39973308 attgcttctatcttctttccgttgttgatgcattttaattttccacaccactgcaaataattaaaa 39973243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 30712883 - 30713148
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    |||| |||||||| ||||||| | |||  ||| ||||||||||  | |||||||||||||  ||||| || ||||| |||||||| | |   ||||||||    
T  30712883 catcgtcaagtgtgactgtcacctccctaaactgaaggtggaagctggaagtctcctcgtgccacctatccacaaaggcacaaattaaacaatggtcaat 30712982  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | |||||||||| || || ||||||  ||| ||||||| ||| | |||||    ||||||||||||| |||||||||   |||| |  ||||| |||    
T  30712983 catgatgtagctggtgtcttggagccaaccaaggctggtgcactgcaatttgttctcccaccaccgtgcaaccatgataggtttggtgtcattatcatgc 30713082  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||| |||||||||||||| || |||||||||||||| ||||||  ||||| |||||||||||||    
T  30713083 atcgcttctatcttctttccgttgttgatgcattttaattttccacgccactgcaaataattaaaa 30713148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 31188242 - 31188374
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||  | |||||||||| ||  |||||||| ||||| ||||||||||||   ||| ||||    
T  31188242 catcatcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctccttgtgccacctctccacaaaggcacaaatcagacaatggccaat 31188341  T
Q  100 caggctgtagctggtatcatgaagccaagaaag 132  Q
    || | ||||||||||||| ||||||||| ||||    
T  31188342 catgttgtagctggtatcctgaagccaacaaag 31188374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 25783892 - 25784047
Alignment:
Q  150 tgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgcatcgcgtctatcttctttccattattgatgcattttaaatttccatacca 249  Q
    ||||| |||||||| ||||| |||||||||  ||||| | || ||| |||||| | || ||||||||||| ||  |||   ||||||| ||||||  |||    
T  25783892 tgtcatgccaccactgtgcagccatgataggcatggtttcttcatcatgcatctcctcaatcttctttccgttgctga---attttaattttccacgcca 25783988  T
Q  250 ctacaaataattaaaaacgatacctaaacatcagtttacactcatggctacacaaacag 308  Q
    || ||||||||||||||| ||||| |||||| ||||||||||||||||| |||||||||    
T  25783989 ctgcaaataattaaaaacaatacccaaacattagtttacactcatggcttcacaaacag 25784047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 28244488 - 28244349
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||| |||||||| |||||  |||||||||||||||  |||||||   |||||||| | | ||| | |||||||||    
T  28244488 catcatcaagtgtcactgtcatctccccaaacggaagatggaagctcgaagtctcctcgtgacacctctgcgcaaatgcagatagcaggtcgtggtcaat 28244389  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtg 139  Q
      || ||||||| |||||||||||| ||||||||| ||||    
T  28244388 ttggttgtagcttgtatcatgaagctaagaaagaccggtg 28244349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 46271766 - 46272030
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    |||| |||||||| |||||||||  |||  ||| |||||||||  | |||| ||| ||||  |||||||| ||||| ||||||||||||   ||||||||    
T  46271766 catcgtcaagtgtgactgtcatcttcccatacgaaaggtggaagctggaaggctcttcgtgccacctctctacaaaggcacaaatcagaccatggtcaat 46271865  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctg-aattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttg 198  Q
    |||| |||||||||| || || ||||||  ||| ||||||| ||| |||||  || | |||||| |||||| |||||||||   |||| |  ||||  ||    
T  46271866 caggttgtagctggtgtcctg-agccaaccaaggctggtgccctgcaatttcttctc-ccaccatcgtgcaaccatgataggtctggtgtcattattatg 46271963  T
Q  199 catcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    |||||| |||||||||||| | || |||||||||||||| ||| ||  ||| | |||||||||||||    
T  46271964 catcgcttctatcttcttttcgttgttgatgcattttaatttttcacgccaatgcaaataattaaaa 46272030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 25783766 - 25783883
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||  ||| ||||||||||  | ||| |||||||||  |||||||| ||||| |||||||| |||   ||||||||    
T  25783766 catcatcaagtgtgactgtcatctccctaaacagaaggtggaagctggaattctcctcgtgccacctctccacaaaggcacaaataagacgatggtcaat 25783865  T
Q  100 caggctgtagctggtatc 117  Q
     ||| |||||||||||||    
T  25783866 gaggttgtagctggtatc 25783883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 20221124 - 20221197
Alignment:
Q  191 ttatcttgcatcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||| |||||||| ||||| |||||||| || |||||||||||||| ||||||  ||||| |||||||||||||    
T  20221124 ttatcatgcatcgcttctat-ttctttcctttgttgatgcattttaattttccacgccactgcaaataattaaaa 20221197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 20219331 - 20219445
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    |||| |||||||| | ||||||| |||| ||| ||||||||||  | |||||||||| ||  |||||||| |||||  |||||||||||   ||||||||    
T  20219331 catcgtcaagtgtgattgtcatctccccaaacagaaggtggaagctggaagtctccttgtgccacctctccacaaagacacaaatcagaccatggtcaat 20219430  T
Q  100 caggctgtagctggt 114  Q
    || | ||||||||||    
T  20219431 catgttgtagctggt 20219445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 60 - 376
Target Start/End: Complemental strand, 13682108 - 13681802
Alignment:
Q  60 gtcacctctcgacaaatgcacaaatcagattgtggtcaatcaggctgtagctggtatcatgaagccaagaaagactggtgcgctg-aattttgtcacgcc 158  Q
    |||||||||| ||||||||| ||||||||  |||||||||||| |||||| ||||||| | || ||||||||||  ||||| ||| |||||||||| | |    
T  13682108 gtcacctctccacaaatgcaaaaatcagaccgtggtcaatcagtctgtagttggtatcctaaa-ccaagaaagatcggtgccctgcaattttgtcatgtc 13682010  T
Q  159 accaccgtgcatccatgatagagatggtctgtttatcttgcatcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaata 258  Q
    ||||||||||| ||||||||| |||||  |||||||| |  ||||| ||||||||||||||||  ||||||||||||||||| |||   |||| ||||||    
T  13682009 accaccgtgcagccatgatagggatggaatgtttatcatatatcgcttctatcttctttccatcgttgatgcattttaaattgccacgtcactgcaaata 13681910  T
Q  259 attaaaaacgatacctaaacatcagtttacactcatggctacac-aaacagggcagttcaacaatttaacagtacataaacatcagcttcacaaatatca 357  Q
    |||||            |||||||| |||||||| || ||  || ||||| |||| ||||||||||||||| |||||||||||||| ||||||||||| |    
T  13681909 attaa-----------gaacatcagcttacactcttgactttacaaaacatggcaattcaacaatttaacaatacataaacatcagtttcacaaatatta 13681821  T
Q  358 aaaactattcacaatcatg 376  Q
    | ||||||| |||||||||    
T  13681820 acaactatttacaatcatg 13681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 25062493 - 25062729
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| |||||||||  ||| |||| ||| |||||  |||||||||||||||  |||||||| | ||||||| | | ||||  |||||||||    
T  25062493 catcatcaagtgtcactgtcatcttcccaaacgaaagatggaagctcgaagtctcctcgtgtcacctctccataaatgcagatagcagaccgtggtcaat 25062592  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    | ||| ||||||| |||| |||||||||||||||||||||    ||||    |||| |||||||| ||||||||||||||   |||| |  | ||| |||    
T  25062593 ctggcagtagctgatatcctgaagccaagaaagactggtg----gaatcccatcactccaccaccatgcatccatgataggcttggtatcgtcatcatgc 25062688  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatt 240  Q
    ||| | |  |||||||| ||||| |||||||||||||||||    
T  25062689 atcacattaatcttcttcccatttttgatgcattttaaatt 25062729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 43628341 - 43628606
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||  | |||||||||||||  |||||||| ||||| ||||||||||||   ||||||||    
T  43628341 catcatcaagtgtgactgtcatctccccaaacggaaggtggaaggtggaagtctcctcgtgccacctctccacaaaggcacaaatcagaccatggtcaat 43628440  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | ||||||| || || || ||||||  ||| | ||||| ||| | |||||    ||||||||||| | |||||||||   | || |  ||||| |||    
T  43628441 catgttgtagctagtgtcctggagccaaccaaggccggtgccctgcaatttgttctcccaccaccgtgaagccatgataggtcttgtgtcattatcatgc 43628540  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||| |||||||||||| | || |||||||||||||| ||||||  ||||| |||||||||||||    
T  43628541 atcgcttctatcttcttttcgttgttgatgcattttaattttccacgccactgcaaataattaaaa 43628606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 50543664 - 50543399
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    |||| |||||||| ||||||||| |||| ||||||||||||||  | |||||||||||||  |||||||| ||||| ||||||||||||   ||||||||    
T  50543664 catcgtcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctctccacaaaggcacaaatcagaccatggtcaat 50543565  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | |||||||||| |  || ||||||  ||| | ||||| ||| | |||||    ||||||||||||| |||||||||   |||| |  ||||  |||    
T  50543564 catgttgtagctggtgttctggagccaaccaaggccggtgccctgcaatttgttctcccaccaccgtgcagccatgataggtctggtgtcattatgatgc 50543465  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||| |||||||||||||| || |||||||||||||| ||||||   |||| |||||||||||||    
T  50543464 atcgcttctatcttctttccgttgttgatgcattttaattttccacgtcactgcaaataattaaaa 50543399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 28793670 - 28793935
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||| || |||||||||||  | |||||||||||||  |||||||  ||||  ||||| ||||||   ||||||||    
T  28793670 catcatcaagtgtgactgtcatctccccaaatggaaggtggaagctggaagtctcctcgtgccacctctacacaatggcacatatcagaccatggtcaat 28793769  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | ||||||||||||| || || |||  |||   ||||| ||| | | |||    ||||||||||||| |||||||||   |||| |  | ||| |||    
T  28793770 catgttgtagctggtatcttggagtcaaccaaggtcggtgccctgcaatctgttctcccaccaccgtgcagccatgataggtctggtgtcatcatcatgc 28793869  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||| | |||||||||||||| || |||||||||||||| ||| ||  |||||||||||||||||||    
T  28793870 atctcttctatcttctttccgttgttgatgcattttaatttttcacgccactacaaataattaaaa 28793935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 35065678 - 35065429
Alignment:
Q  18 tgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaatcaggctgtagctggta 115  Q
    ||||||| |||| ||| |||||||||| || |||||||||||||  |||||||| ||||| ||||| || |||   |||||||||| | |||||||||||    
T  35065678 tgtcatctccccaaaccgaaggtggaagttggaagtctcctcgtgccacctctccacaaaggcacagattagaccatggtcaatcatgttgtagctggta 35065579  T
Q  116 tcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgcatcgcgtctatcttct 215  Q
    || || ||||||  |||   ||||| ||| | |||||    ||||||||||||| |||||||||   |||| |  | ||| |||||| | ||||||||||    
T  35065578 tcctggagccaaccaaggtcggtgccctgcaatttgttctcccaccaccgtgcaaccatgataggtctggtgtcatcatcatgcatctcttctatcttct 35065479  T
Q  216 ttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    || | || |||||||||||| | ||||||  ||||| |||||||||||||    
T  35065478 tttcgttgttgatgcattttcattttccacgccactgcaaataattaaaa 35065429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 42097084 - 42097211
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctc--gtcacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||  ||||||||||||||  | |||||||||||  |||||||||  ||||| ||||| ||||||   ||||||||    
T  42097084 catcatcaagtgtgactgtcatctccctaaacggaaggtggaagctggaagtctcctcgtgtcacctcttcacaaaggcacagatcagaccatggtcaat 42097183  T
Q  100 caggctgtagctggtatcatgaagccaa 127  Q
    || | ||||||||||||| || ||||||    
T  42097184 catgttgtagctggtatcctggagccaa 42097211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 32298256 - 32298314
Alignment:
Q  207 ctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||||||||||| || |||||||||||||| ||||||  ||||| |||||||||||||    
T  32298256 ctatcttctttccgttgttgatgcattttaattttccacgccactgcaaataattaaaa 32298314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 10885767 - 10885640
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||| ||||  |||| || ||||| |||||  | |||||||||||||  |||||| | ||||| ||| |||| ||||  ||||||||    
T  10885767 catcatcaagtgtgactttcatttccccaaatggaagctggaagctggaagtctcctcgtgccacctccccacaaaggcataaattagatcatggtcaat 10885668  T
Q  100 caggctgtagctggtatcatgaagccaa 127  Q
    || | ||||||||||||| || ||||||    
T  10885667 catgatgtagctggtatcctggagccaa 10885640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 6658773 - 6658510
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgtcacctctcgacaaatgcacaaatcagattgtggtcaatca 101  Q
    ||||||||||||| ||||||||| |||| ||| ||||||||||  | |||||||||| | |||||||| ||||| ||||| ||||||   ||||||||||    
T  6658773 catcatcaagtgtgactgtcatctccccaaacagaaggtggaagctggaagtctccttgccacctctccacaaaggcacagatcagaccatggtcaatca 6658674  T
Q  102 ggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgcat 201  Q
     | ||||||||||||| |  ||||||  ||| | ||||| ||| | | |||    ||||||||||||| |||||||||   |||| |  | ||| |||||    
T  6658673 tgttgtagctggtatcctagagccaaccaaggccggtgccctgcaatctgttctcccaccaccgtgcaaccatgataggtctggtgtcatcatcatgcat 6658574  T
Q  202 cgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    | | |||||||||||||| || |||||||||||||| ||||||  ||||| |||||||||||||    
T  6658573 ctcttctatcttctttccgttgttgatgcattttaattttccacgccactgcaaataattaaaa 6658510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 38364980 - 38364715
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||| ||||| |||| || |||||||||||  | ||||||||||| |  |||| ||| ||||| ||||| ||||||   ||||||||    
T  38364980 catcatcaagtgtgactatcatctccccaaatggaaggtggaatctagaagtctcctcatgccaccactccacaaaggcacatatcagaccatggtcaat 38364881  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | ||||||||||||| || ||||||  ||| | ||||| ||  | | |||    ||||||||||||| |||||||||   | || |  | ||| |||    
T  38364880 catgttgtagctggtatcctggagccaaccaaggccggtgccctacaatctgttctcccaccaccgtgcagccatgataggtcttgtgtcatcatcatgc 38364781  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||| | ||||||||||||||||| |||||||||||||| ||||||  ||||| |||||||||||||    
T  38364780 atctcttctatcttctttccattgttgatgcattttaattttccactccactgcaaataattaaaa 38364715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 20828371 - 20828634
Alignment:
Q  4 tcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaatca 101  Q
    ||||||||||| ||||||| | |||| ||||||||||||||  | |||||||||||||  |||||||| ||||| ||||| ||||||   ||||||||||    
T  20828371 tcatcaagtgtgactgtcacctccccgaacggaaggtggaacctggaagtctcctcgtgccacctctccacaaaggcacagatcagaccatggtcaatca 20828470  T
Q  102 ggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgcat 201  Q
      |||||||||||||| || | ||||  ||| | |||||  || | | |||    ||||||||||||| |||||||||   |||| |  | ||| |||||    
T  20828471 tactgtagctggtatcttggacccaaccaaggccggtgccatgcaatctgttctcccaccaccgtgcagccatgataggtctggtgtcatcatcatgcat 20828570  T
Q  202 cgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    | | |||||||||||||  || |||||||||||||| ||||||  ||||| ||||||| |||||    
T  20828571 ctcttctatcttctttctgttgttgatgcattttaattttccacgccactgcaaataactaaaa 20828634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 10015038 - 10014773
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||| ||||||||||| ||  |  |||||| ||| |  |||||||| | ||| ||||||||||||   ||||||||    
T  10015038 catcatcaagtgtgactgtcatctccccaaacggaaggtgaaagctgaaagtcttctcatgccacctctccataaaggcacaaatcagaccatggtcaat 10014939  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || ||||||||||||||| || ||||||  ||| | |||||  || | | |||    ||||||||||||| | |||||||   |||| |  | ||| |||    
T  10014938 catgctgtagctggtatcctggagccaaccaaggccggtgccgtgcaatctgttctcccaccaccgtgcagctatgataggtctggtgtcatcatcatgc 10014839  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||| | |||||||||||| | || |||||||||||||| ||||||  ||||| | |||||||||||    
T  10014838 atctcttctatcttcttttcgttgttgatgcattttaattttccacgccactgcgaataattaaaa 10014773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 43453184 - 43453316
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| | ||||||| |||| |||||||| |||||  | ||| ||||||| |  |||||||| ||||||||| ||||||  |||||||||||    
T  43453184 catcatcaagtgtcattgtcatctccccaaacggaagatggaagcttgaaatctcctcatgccacctctccacaaatgcagaaatcaagttgtggtcaat 43453283  T
Q  100 caggctgtagctggtatcatgaagccaagaaag 132  Q
      |  ||||||| ||||||||||||||||||||    
T  43453284 ttgaatgtagcttgtatcatgaagccaagaaag 43453316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 36339770 - 36339702
Alignment:
Q  197 tgcatcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||||| || |||||||||||||| ||  ||||||||||||| ||||||  ||||| |||||||||||||    
T  36339770 tgcattgcttctatcttctttccgttgctgatgcattttaattttccacgccactgcaaataattaaaa 36339702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 3408451 - 3408716
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    |||| |||||||| ||||||||| |||  ||||||||||||||  | |||||||||||||  |||||||| | ||| ||| ||||||||   ||||||||    
T  3408451 catcgtcaagtgtgactgtcatctcccgaaacggaaggtggaagctggaagtctcctcgtgccacctctccaaaaaggcataaatcagaccatggtcaat 3408550  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || |||||||||||| || || ||||||  |||   ||||| ||| | |||||    ||||||||||||| |||||||||   |||| |  ||||| |||    
T  3408551 catgctgtagctggtgtcctggagccaaccaaggtcggtgccctgcaatttgttctcccaccaccgtgcaaccatgataggtctggtgtcattatcatgc 3408650  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||| | |||||||| ||||  || |||||||||||||| ||||||  |||||||||||||||||||    
T  3408651 atcacttctatcttttttcagttgttgatgcattttaattttccacgccactacaaataattaaaa 3408716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 308
Target Start/End: Complemental strand, 21639286 - 21638981
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||| ||| |||| ||    ||||||||  | |||||||||| ||  |||||||| ||||| ||| |||| |||   ||||||||    
T  21639286 catcatcaagtgtgactgttatctccccaaat---aggtggaagctggaagtctccttgtgccacctctccacaaaggcataaattagaccatggtcaat 21639190  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    |||||||||||||||||| |||||||||| ||  |   ||| ||| | | ||||  ||| |||||||||| ||||  ||| | |||| | ||| || ||     
T  21639189 caggctgtagctggtatcctgaagccaagtaacgccaatgccctgcaatctgtcctgccgccaccgtgcagccatagtaggggtggtttctttgtcatgt 21639090  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaaacgatacctaaacatcagtttacactcatggcta 299  Q
    ||| |  | |||||||||   ||  ||||||||||||| || |||  ||||| ||||||| ||||||| |||| ||||||| |||||||||||||||||     
T  21639089 atctccccaatcttctttttgttgctgatgcattttaatttgccacgccactgcaaataaataaaaacaatacataaacattagtttacactcatggctt 21638990  T
Q  300 cacaaacag 308  Q
    |||||||||    
T  21638989 cacaaacag 21638981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 39348152 - 39347887
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| | ||||||| |||| ||||||||||||||  | ||||| |||||||  |||||||| ||||| ||||| ||||||   ||||||||    
T  39348152 catcatcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtatcctcgtgccacctctccacaaaggcacagatcagaccatggtcaat 39348053  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | ||||||||||||| |  ||||||  ||| ||||||| ||| | | |||    | ||||||||||| |||||||||   || | |  | ||| |||    
T  39348052 catgttgtagctggtatcctagagccaaccaaggctggtgccctgcaatctgttctcctaccaccgtgcagccatgataggtttgatgtcatcatcatgc 39347953  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||| | |||||||||||||| || |||||||||||||| ||||||  ||||  |||||||||||||    
T  39347952 atctcttctatcttctttccgttgttgatgcattttaattttccacgccacagcaaataattaaaa 39347887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 8626628 - 8626889
Alignment:
Q  7 tcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaatcaggc 104  Q
    |||||||| ||||||||| |||| ||||||||||||||  | |||||||||||||  ||||| || ||||| ||||||||||||   |||||||||| |     
T  8626628 tcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctatccacaaaggcacaaatcagaccatggtcaatcatgt 8626727  T
Q  105 tgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatcca-tgatagagatggtctgtttatcttgcatcg 203  Q
    ||||| |||| || || ||||||  |||   |||||  || | |||||    ||||||||||||| ||| ||||||   | || |  ||||| |||||||    
T  8626728 tgtagatggtgtcctggagccaaccaaggtcggtgccttgcaatttgttctcccaccaccgtgcagccattgataggtctagtgtcattatcatgcatcg 8626827  T
Q  204 cgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    | |||||||| ||| |||| ||||| |||||||| ||||||  ||||| |||||||||||||    
T  8626828 cttctatctttttttcattgttgatacattttaattttccacgccactgcaaataattaaaa 8626889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 42723036 - 42722771
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||  |||| |||| |||||||||  | |||||||||||||  ||||| || ||||| ||||   |||||   ||||||||    
T  42723036 catcatcaagtgtgactgtcatttccccaaacgaaaggtggaagctggaagtctcctcgtgccacctttccacaaaggcacggttcagaccatggtcaat 42722937  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | |||||||||| || || ||||||  ||| | ||||| ||| | | |||    |||||| |||||| |||||||||   |||| |  | ||| |||    
T  42722936 catgttgtagctggtgtcctgtagccaaccaaggccggtgccctgcaatctgttctcccaccatcgtgcagccatgataggtctggtgtcatcatcatgc 42722837  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||| | |||||||||||||| ||  ||||||||||||| ||||||  ||||| |||||||||||||    
T  42722836 atcacttctatcttctttccgttgctgatgcattttaattttccacgccactgcaaataattaaaa 42722771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 43722456 - 43722329
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||  ||||||||| |||  ||| ||||||||||  | |||||||||||||  |||||||| ||||| ||||| ||||||   ||||||||    
T  43722456 catcatcaagtgagactgtcatctccctaaacagaaggtggaagctggaagtctcctcgtgccacctctccacaaaggcacagatcagaccatggtcaat 43722357  T
Q  100 caggctgtagctggtatcatgaagccaa 127  Q
    || ||| ||||||||||| || ||||||    
T  43722356 catgctatagctggtatcctggagccaa 43722329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 51897573 - 51897498
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaa 75  Q
    ||||||||||||| | ||||||| |||| ||||||||||||||  | |||||||||||||  |||||||| |||||    
T  51897573 catcatcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctctccacaaa 51897498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 43722259 - 43722191
Alignment:
Q  197 tgcatcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    |||||| | |||||||||||||| || |||||||||||||| ||||||   || | |||||||||||||    
T  43722259 tgcatctcttctatcttctttccgttgttgatgcattttaattttccaagtcattgcaaataattaaaa 43722191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 51897334 - 51897274
Alignment:
Q  197 tgcatcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaat 257  Q
    |||||||| |||||||||||||| ||  ||||||||||||| ||||||  ||||| |||||    
T  51897334 tgcatcgcttctatcttctttccgttgctgatgcattttaattttccacgccactgcaaat 51897274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 235446 - 235319
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| | ||||||| |||| || |||||||||||  | ||||||| |||||  |||||||| ||||| ||||||||||||   ||||||||    
T  235446 catcatcaagtgtgaatgtcatctccccaaatggaaggtggaagctggaagtctactcgtgccacctctccacaaaggcacaaatcagaccatggtcaat 235347  T
Q  100 caggctgtagctggtatcatgaagccaa 127  Q
    || | ||||||||||||| || ||||||    
T  235346 catgttgtagctggtatcctggagccaa 235319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 30844941 - 30845206
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||| ||| || | ||||||||||||||  | |||||||||||||  ||| |||| ||||| ||| | ||||||   ||||||||    
T  30844941 catcatcaagtgtgactgttatctcctcaaacggaaggtggaagctggaagtctcctcgtgccacatctccacaaaggcatagatcagaccatggtcaat 30845040  T
Q  100 caggctgtagctggtatcatgaagccaagaaagactggtgcgctgaattttgtcacgccaccaccgtgcatccatgatagagatggtctgtttatcttgc 199  Q
    || | ||||||||||||| || ||||||  |||   |||||  || | | |||    ||||||||||||| | ||||||    |||| |  | ||| |||    
T  30845041 catgatgtagctggtatcttggagccaaccaaggtcggtgccatgcaatctgttctcccaccaccgtgcagctatgataagtctggtgtcatgatcatgc 30845140  T
Q  200 atcgcgtctatcttctttccattattgatgcattttaaatttccataccactacaaataattaaaa 265  Q
    ||| | |||||||| ||||| ||||||||||||||||| ||||||  ||||| |||||||||||||    
T  30845141 atctcttctatcttatttccgttattgatgcattttaattttccacgccactgcaaataattaaaa 30845206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 901669 - 901535
Alignment:
Q  2 catcatcaagtgttactgtcatcccccctaacggaaggtggaaattcgaagtctcctcgt--cacctctcgacaaatgcacaaatcagattgtggtcaat 99  Q
    ||||||||||||| ||||||||| |||| ||  |||| |||||  || ||||||| ||||  ||||||||  |||||||| | |  |||| |||||||||    
T  901669 catcatcaagtgtcactgtcatctccccaaatagaagatggaagctcaaagtctcatcgtgccacctctctgcaaatgcagataggagatcgtggtcaat 901570  T
Q  100 caggctgtagctggtatcatgaagccaagaaagac 134  Q
    |  |||| |||||||||  | ||||||||||||||    
T  901569 cttgctgaagctggtattctaaagccaagaaagac 901535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0695 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 4508 - 4456
Alignment:
Q  326 acagtacataaacatcagcttcacaaatatcaaaaactattcacaatcatgac 378  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||||||||    
T  4508 acagtacataaacatcaatttcacaaatatcaacaactatttacaatcatgac 4456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3858 times since January 2019
Visitors: 4822