View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_25 (Length: 424)
Name: NF0750_low_25
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 416
Target Start/End: Original strand, 22421643 - 22422030
Alignment:
| Q |
29 |
aaccttcaatcaaagccataagctccacaacaattttcctactttcattcccaacaacagccttagaaatttccaatatcaaattatcctcatcatcaca |
128 |
Q |
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||||||||||||||||||||||||||||| ||||||| | ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22421643 |
aaccttcaatcaaagccataagctccacagcaattttacgactctcattcccatcaacagtcttagaaatttccaatatcaaattatcctcatcatcaca |
22421742 |
T |
|
| Q |
129 |
aacagcaacaccaatcccagccaaagaaacattctcacctctcacaacctcctcactcactaaacccttaaaataaaccctaacaaccggactatcatcg |
228 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
22421743 |
aacagcaacaccaatcccagccaaagaaacactctcacctctcacactctcctcactcactaaacccttaaaataaaccctaacaaccggaccttcattg |
22421842 |
T |
|
| Q |
229 |
ttccgactcgtcgaacccgacaaactcccttcaccaaacggtttctcaaaattatccccccatttatcccaatcctccaccggcatgttgaaaatctccg |
328 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
22421843 |
ttccgcatcgtcgaacccgaagaactcccttcaccaaacggtttctcgaaattatctccccattcatcccaatccttcaccggcatgttgaaaatctccg |
22421942 |
T |
|
| Q |
329 |
acgccattttctgatcatgaatccgacggttgagatcatctctcgcttcacgcattgctttctcgctttgcagtctgtcgttcatctc |
416 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||| |
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| T |
22421943 |
acgccattttctgatcatgaatccgacggttgagatcgtctctcgcttcacgcattgctctctcgctttgtaatctgtcgttcatctc |
22422030 |
T |
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