View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_27 (Length: 414)

Name: NF0750_low_27
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_27
NF0750_low_27
[»] chr1 (16 HSPs)
chr1 (16-410)||(35707178-35707561)
chr1 (325-396)||(28689446-28689517)
chr1 (335-396)||(27140493-27140554)
chr1 (348-396)||(10199402-10199450)
chr1 (350-393)||(47877139-47877182)
chr1 (340-378)||(15361060-15361098)
chr1 (340-377)||(4700079-4700116)
chr1 (335-396)||(11639410-11639471)
chr1 (339-396)||(26184767-26184824)
chr1 (335-376)||(26461955-26461996)
chr1 (335-376)||(49373700-49373741)
chr1 (308-372)||(601029-601093)
chr1 (252-284)||(4180720-4180752)
chr1 (348-396)||(6292521-6292569)
chr1 (340-396)||(10854753-10854809)
chr1 (306-338)||(12477359-12477391)
[»] chr5 (12 HSPs)
chr5 (103-396)||(34198174-34198498)
chr5 (306-394)||(985599-985687)
chr5 (306-374)||(29116966-29117034)
chr5 (335-396)||(13604843-13604904)
chr5 (340-396)||(8177526-8177582)
chr5 (340-396)||(17258877-17258933)
chr5 (42-74)||(34198097-34198129)
chr5 (307-342)||(14599371-14599406)
chr5 (342-396)||(14331389-14331443)
chr5 (306-395)||(36774702-36774789)
chr5 (335-396)||(41957445-41957506)
chr5 (335-395)||(18543192-18543251)
[»] chr8 (7 HSPs)
chr8 (306-395)||(20672738-20672825)
chr8 (334-378)||(26284807-26284851)
chr8 (350-394)||(13000420-13000464)
chr8 (257-287)||(8578540-8578570)
chr8 (338-396)||(41606897-41606955)
chr8 (336-392)||(6950338-6950394)
chr8 (340-372)||(44617807-44617839)
[»] chr7 (7 HSPs)
chr7 (306-393)||(7244668-7244753)
chr7 (348-394)||(46082064-46082110)
chr7 (308-342)||(28340464-28340498)
chr7 (335-405)||(35267377-35267447)
chr7 (309-396)||(22551399-22551484)
chr7 (310-394)||(39539777-39539861)
chr7 (350-394)||(47134753-47134797)
[»] chr6 (10 HSPs)
chr6 (337-394)||(32386559-32386616)
chr6 (316-394)||(733173-733251)
chr6 (348-394)||(9027606-9027652)
chr6 (306-391)||(31583667-31583750)
chr6 (351-412)||(30004921-30004982)
chr6 (335-396)||(34939759-34939820)
chr6 (348-396)||(7785738-7785786)
chr6 (306-342)||(10154187-10154223)
chr6 (348-392)||(27909636-27909680)
chr6 (321-396)||(33887833-33887906)
[»] chr3 (10 HSPs)
chr3 (325-394)||(36200101-36200170)
chr3 (340-396)||(36101588-36101644)
chr3 (336-393)||(45432936-45432993)
chr3 (348-396)||(36139906-36139954)
chr3 (342-397)||(37825144-37825199)
chr3 (306-393)||(49586933-49587020)
chr3 (335-396)||(8933802-8933863)
chr3 (359-404)||(12923311-12923356)
chr3 (340-396)||(27290895-27290951)
chr3 (348-396)||(51206492-51206540)
[»] chr4 (8 HSPs)
chr4 (306-378)||(5131262-5131336)
chr4 (352-394)||(4691880-4691922)
chr4 (308-394)||(6428006-6428092)
chr4 (321-378)||(18628555-18628610)
chr4 (310-378)||(4191710-4191776)
chr4 (334-395)||(43824297-43824358)
chr4 (335-391)||(7694009-7694065)
chr4 (252-284)||(30207695-30207727)
[»] chr2 (6 HSPs)
chr2 (335-373)||(24097823-24097861)
chr2 (337-374)||(9395147-9395184)
chr2 (348-396)||(1647264-1647312)
chr2 (306-342)||(33192159-33192195)
chr2 (306-338)||(33942116-33942148)
chr2 (306-342)||(41851971-41852007)
[»] scaffold0003 (1 HSPs)
scaffold0003 (335-396)||(306341-306402)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 35707561 - 35707178
Alignment:
Q  16 atcagcgttttgattttaattccaatttcaatttctcacatgcacagtactttcaatctaatattccttcctctcnnnnnnn--cttcatcatgcatctc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  35707561 atcagcgttttgattttaattccaatttcaatttctcacatgcacagtactttcaatctaatattccttcctctctctttttttcttcatcatgcatctc 35707462  T
Q  114 acattcttaattatataaataaaccccatttcattattttctactttaattctcatgatgatcaatgttgtgcttcattgtttgatcatacttgatgttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||    
T  35707461 acattcttaattatataaataaaccccatttcattattttctactttaattctcatgatgatcaatgtt-------------tgatcatacttgatgttg 35707375  T
Q  214 aatttataaggacttgttgtgttcaggctcaatttggataatcaagcacttatcatataagtgcttatgtacaggctagctacttctatgacagataaaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35707374 aatttataaggacttgttgtgttcaggctcaatttggataatcaagcacttatcatataaatgcttatgtacaggctagctacttctatgacagataaaa 35707275  T
Q  314 ttaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagctctctcaaatggtat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35707274 ttaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagctctctcaaatggtat 35707178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 28689517 - 28689446
Alignment:
Q  325 tgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||||| |||| |||| || | |||||||||||||| |||||||||||||| ||| |||||||||||||    
T  28689517 tgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagct 28689446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 27140493 - 27140554
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||| |||| || |||||||||| ||||| |||||||||||||| ||| |||||||||||||    
T  27140493 taagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagct 27140554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 10199450 - 10199402
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||||||    
T  10199450 agagcttatgaaaataagctgaaaacaacttatgaacatgtcataagct 10199402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 47877139 - 47877182
Alignment:
Q  350 agcttatgaaaatatgctgaaaacaacttgtgggcatgtcataa 393  Q
    |||||||||||||| |||||||||||||| || |||||||||||    
T  47877139 agcttatgaaaataagctgaaaacaacttatgagcatgtcataa 47877182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 15361060 - 15361098
Alignment:
Q  340 tatcctgtagagcttatgaaaatatgctgaaaacaactt 378  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  15361060 tatcctggagagcttatgaaaataagctgaaaacaactt 15361098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 4700116 - 4700079
Alignment:
Q  340 tatcctgtagagcttatgaaaatatgctgaaaacaact 377  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  4700116 tatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 11639471 - 11639410
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||| ||  |||||||||||||||| ||| |||||| ||| ||| |||||||||||||    
T  11639471 taagttattctagagagcttatgaaaataagctaaaaacagcttatggacatgtcataagct 11639410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 26184767 - 26184824
Alignment:
Q  339 ttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||| |||||||||| |||||  ||||||||| ||| ||| |||||||||||||    
T  26184767 ttatcctggagagcttatggaaataatctgaaaacagcttatggacatgtcataagct 26184824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 26461996 - 26461955
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaac 376  Q
    |||| ||||||| |||||||||||||||| ||||||||||||    
T  26461996 taagctatcctgcagagcttatgaaaataagctgaaaacaac 26461955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 49373741 - 49373700
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaac 376  Q
    ||||||||||  ||||||||||||||||| ||||||||||||    
T  49373741 taagttatccaatagagcttatgaaaataagctgaaaacaac 49373700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 601029 - 601093
Alignment:
Q  308 ataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaa 372  Q
    ||||||| |||||||  ||||||||| || | ||||||| |||| ||||||||||| ||||||||    
T  601029 ataaaataaagtcaagttgttttcatatatgctatcctggagagtttatgaaaataagctgaaaa 601093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 4180752 - 4180720
Alignment:
Q  252 taatcaagcacttatcatataagtgcttatgta 284  Q
    |||| ||||||||||||||||||||||||||||    
T  4180752 taattaagcacttatcatataagtgcttatgta 4180720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 6292521 - 6292569
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||||||||||| |||||||||| ||| ||  |||||||||||||    
T  6292521 agagcttatgaaaataagctgaaaacagcttatgaacatgtcataagct 6292569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 10854753 - 10854809
Alignment:
Q  340 tatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||| | |||||| ||||||| |||||||||| ||||||  |||||||||||||    
T  10854753 tatcctgaacagcttaagaaaataagctgaaaacagcttgtgaacatgtcataagct 10854809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 12477391 - 12477359
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaag 338  Q
    ||||||||| |||||||||||||||||||||||    
T  12477391 agataaaataaagtcaaactgttttcatgtaag 12477359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 103 - 396
Target Start/End: Original strand, 34198174 - 34198498
Alignment:
Q  103 tcatgcatctcacattcttaattatataaataaaccccatttcattattttctactttaattctcatgatga------------tcaatgt----tgtgc 186  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||| |            | ||| |    |||      
T  34198174 tcatgcatctcacattcttaattatatatacaaactccatttcattattttctagtttaattctcatgatcaatgttttctaatttaatctgctctgtta 34198273  T
Q  187 ttcattgtttgatcatacttgatgttgaatttataaggacttgttgtgttcaggctcaatttggataatcaa---------gcacttatcatataagtgc 277  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||  || ||||||||||||||||         |||||||||||||||||||    
T  34198274 ttcattgtttgattatacttgatgttgaatttataaggacttgttgtattcgtgcccaatttggataatcaacttaattaagcacttatcatataagtgc 34198373  T
Q  278 ttatgtacaggctagctacttctatgac-agataaaattaagtcaaactgttttcatgtaagttatcctg-----tagagcttatgaaaatatgctgaaa 371  Q
    ||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||||    
T  34198374 ttatgtacaagctaactatttctatgactagataaaattaagtcaaactgttttcatgtaagttattctgtagactagagcttatgaaaatatgctgaaa 34198473  T
Q  372 acaacttgtgggcatgtcataagct 396  Q
     |||||| ||||||||||| |||||    
T  34198474 gcaacttatgggcatgtcacaagct 34198498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 394
Target Start/End: Original strand, 985599 - 985687
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    ||||||||| |||||||||||||||||  |||| |||| || ||||  |||| ||||| |||||||||  ||||||| |||||||||||    
T  985599 agataaaataaagtcaaactgttttcacataagctatcatgaagagactatggaaataagctgaaaaccgcttgtggacatgtcataag 985687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 29117034 - 29116966
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaaca 374  Q
    ||||||||| |||||||||||||||| | |||| ||||||| | |||||||| ||||| ||||||||||    
T  29117034 agataaaataaagtcaaactgttttcgtataagctatcctgaaaagcttatgcaaataagctgaaaaca 29116966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 13604904 - 13604843
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||||| || |||||||||||||||| | |||||||||| | ||| |||||||||||||    
T  13604904 taagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagct 13604843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 8177582 - 8177526
Alignment:
Q  340 tatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||| ||||||||||||||||  ||||||||||||| ||| ||| |||||||||    
T  8177582 tatcctggagagcttatgaaaataacctgaaaacaacttatggacatatcataagct 8177526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 17258933 - 17258877
Alignment:
Q  340 tatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||| |||||||||||||||| |||||||||| ||| ||  |||||||||||||    
T  17258933 tatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagct 17258877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 34198097 - 34198129
Alignment:
Q  42 ttcaatttctcacatgcacagtactttcaatct 74  Q
    |||||||||||||||||||||||||||||||||    
T  34198097 ttcaatttctcacatgcacagtactttcaatct 34198129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 14599406 - 14599371
Alignment:
Q  307 gataaaattaagtcaaactgttttcatgtaagttat 342  Q
    ||||||||||||||||||||||||||| ||||||||    
T  14599406 gataaaattaagtcaaactgttttcatataagttat 14599371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 14331389 - 14331443
Alignment:
Q  342 tcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||| |||||||||||||||| ||||||| || ||| ||| |||||||||||||    
T  14331389 tcctggagagcttatgaaaataagctgaaatcagcttatggacatgtcataagct 14331443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 395
Target Start/End: Complemental strand, 36774789 - 36774702
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagc 395  Q
    ||||||||  ||||||||||||||| ||  ||| ||||||| |||||||||| ||||| ||||||| || |||  || ||||||||||||    
T  36774789 agataaaacaaagtcaaactgtttttat--aagctatcctggagagcttatggaaataagctgaaaccatctttaggacatgtcataagc 36774702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 41957506 - 41957445
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||| ||||||  ||| |||||||||||| | |||||||||||| ||| |||||||||||||    
T  41957506 taagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagct 41957445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 18543251 - 18543192
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagc 395  Q
    |||| ||||||| ||||||||||||| || |||||||||||||  ||| ||||||||||||    
T  18543251 taagctatcctggagagcttatgaaa-taagctgaaaacaactcatggacatgtcataagc 18543192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 395
Target Start/End: Original strand, 20672738 - 20672825
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagc 395  Q
    ||||||||| ||||||||||||||| ||  ||| ||||||| |||||||||||||||| |||||||||| ||| ||  ||||||||||||    
T  20672738 agataaaataaagtcaaactgtttttat--aagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagc 20672825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 26284851 - 26284807
Alignment:
Q  334 gtaagttatcctgtagagcttatgaaaatatgctgaaaacaactt 378  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||    
T  26284851 gtaagttatcctgtatagcttatgaaaataagctgaaaacaactt 26284807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 13000464 - 13000420
Alignment:
Q  350 agcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||    
T  13000464 agcttatggaaataagctgaaaacaacttgtggacatgtcataag 13000420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 287
Target Start/End: Original strand, 8578540 - 8578570
Alignment:
Q  257 aagcacttatcatataagtgcttatgtacag 287  Q
    |||||||||||||||||||||||||||||||    
T  8578540 aagcacttatcatataagtgcttatgtacag 8578570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 41606955 - 41606897
Alignment:
Q  338 gttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||||  |||||||||| ||||| |||||||||||||| ||  |||||||||||||    
T  41606955 gttatcctagagagcttatggaaataagctgaaaacaacttttgaacatgtcataagct 41606897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 6950338 - 6950394
Alignment:
Q  336 aagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcata 392  Q
    ||||||||||  |||||||||| ||||| |||||||||||||| | | |||||||||    
T  6950338 aagttatcctaaagagcttatggaaataagctgaaaacaacttatcgacatgtcata 6950394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 44617839 - 44617807
Alignment:
Q  340 tatcctgtagagcttatgaaaatatgctgaaaa 372  Q
    |||||||||||||||||||||||| ||||||||    
T  44617839 tatcctgtagagcttatgaaaataagctgaaaa 44617807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 7244668 - 7244753
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataa 393  Q
    ||||||||  ||||||||||||||||||  ||| |||  || |||||||||||||||| |||||||||||||| || |||||||||||    
T  7244668 agataaaagaaagtcaaactgttttcat--aagctatattggagagcttatgaaaataagctgaaaacaacttatgagcatgtcataa 7244753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 46082064 - 46082110
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||||    
T  46082064 agagcttatgaaaataagctgaaaacaacttatggtcatgtcataag 46082110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 28340498 - 28340464
Alignment:
Q  308 ataaaattaagtcaaactgttttcatgtaagttat 342  Q
    ||||||| |||||||||||||||||||||||||||    
T  28340498 ataaaataaagtcaaactgttttcatgtaagttat 28340464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 35267377 - 35267447
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagctctctcaaat 405  Q
    ||||||||| || |||||||||  ||||| |||||||||||| | ||  ||||||||||||| ||||||||    
T  35267377 taagttatcttggagagcttatagaaataagctgaaaacaacctatgaacatgtcataagctttctcaaat 35267447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 22551484 - 22551399
Alignment:
Q  309 taaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||| |||||||| | |||||||  |||| ||| || |||||||||| ||||| |||||||||||| | ||  |||||||||||||    
T  22551484 taaaataaagtcaaattcttttcat--aagtaatcttggagagcttatgtaaataagctgaaaacaacatttgaacatgtcataagct 22551399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 39539861 - 39539777
Alignment:
Q  310 aaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    ||||| || ||||| ||||||||| |||| ||||||   |||||| | |||||| |||||||||| ||| ||| |||||||||||    
T  39539861 aaaataaattcaaattgttttcatataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtcataag 39539777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 47134797 - 47134753
Alignment:
Q  350 agcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    |||||||||||||| |||||||||||||| ||| | |||||||||    
T  47134797 agcttatgaaaataagctgaaaacaacttatggacgtgtcataag 47134753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 32386616 - 32386559
Alignment:
Q  337 agttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    |||||||||| |||||||||||||||| ||||||||||| |||||| ||||| |||||    
T  32386616 agttatcctggagagcttatgaaaataagctgaaaacaagttgtggacatgttataag 32386559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 733251 - 733173
Alignment:
Q  316 aagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    |||||||| |||||| || |||| ||||||  | | |||||  |||||||||||||||||||||||| |||||||||||    
T  733251 aagtcaaattgttttaatataagctatcctagaaaacttatagaaatatgctgaaaacaacttgtggacatgtcataag 733173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 9027606 - 9027652
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||||    
T  9027606 agagcttatgaaaataagctgaaaacaacttatggacatgtcataag 9027652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 391
Target Start/End: Original strand, 31583667 - 31583750
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcat 391  Q
    ||||||||| |||||||| |||||||||  ||| ||||| | | |||||||| ||||| | |||||||||||| ||| ||||||||    
T  31583667 agataaaatgaagtcaaattgttttcat--aagctatcccgaaaagcttatggaaataagttgaaaacaacttatggacatgtcat 31583750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 30004921 - 30004982
Alignment:
Q  351 gcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagctctctcaaatggtatcg 412  Q
    ||||||| ||||| ||||||||||  || ||| ||| |||||||||||||||||| ||||||    
T  30004921 gcttatggaaataagctgaaaacagtttatggacatttcataagctctctcaaatagtatcg 30004982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 34939759 - 34939820
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||| ||||||| |||| ||||| ||||| ||||||||||| || ||| |||||||||||||    
T  34939759 taagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagct 34939820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 7785786 - 7785738
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||||| ||||| |||||||||||||| | | |||||||||||||    
T  7785786 agagcttatggaaataagctgaaaacaacttatagacatgtcataagct 7785738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 10154187 - 10154223
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttat 342  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  10154187 agataaaataaagtcaaactgttttcatataagttat 10154223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 27909680 - 27909636
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcata 392  Q
    |||||||||| ||||| |||||||||||||| ||| |||||||||    
T  27909680 agagcttatggaaataagctgaaaacaacttatggacatgtcata 27909636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 33887833 - 33887906
Alignment:
Q  321 aaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||||||||  ||| ||||||| |  ||||||| ||||| | |||||||||||||||  |||||||||||||    
T  33887833 aaactgttttcat--aagctatcctgaaatgcttatggaaataagttgaaaacaacttgtgaacatgtcataagct 33887906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 36200101 - 36200170
Alignment:
Q  325 tgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    ||||||| | |||| |||||||||||||| ||| ||||| |||||||||||||| ||| |||||||||||    
T  36200101 tgttttcttataagctatcctgtagagctcatggaaataagctgaaaacaacttatggacatgtcataag 36200170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 36101588 - 36101644
Alignment:
Q  340 tatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||| |||||||||||||||| |||||||||| ||||||  |||||||||||||    
T  36101588 tatcctgaagagcttatgaaaataagctgaaaacagcttgtgaacatgtcataagct 36101644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 45432993 - 45432936
Alignment:
Q  336 aagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataa 393  Q
    |||| ||||||||||||||||| ||||| |||||||||||||| ||  ||||||||||    
T  45432993 aagtcatcctgtagagcttatggaaataagctgaaaacaacttatgaacatgtcataa 45432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 36139906 - 36139954
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||||||||||| |||||||||| ||||||  |||||||||||||    
T  36139906 agagcttatgaaaataagctgaaaacagcttgtgaacatgtcataagct 36139954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 37825144 - 37825199
Alignment:
Q  342 tcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagctc 397  Q
    ||||| |||||||||| |||||  ||||||||||||| ||| ||||||||||||||    
T  37825144 tcctggagagcttatggaaataacctgaaaacaacttatggacatgtcataagctc 37825199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 49587020 - 49586933
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataa 393  Q
    ||||||||| |||||||||||||||||| |||| |||| || |||| |||   |||||  ||||||||||||| |||  |||||||||    
T  49587020 agataaaataaagtcaaactgttttcatataagctatcttggagagattaaagaaataaactgaaaacaacttatggatatgtcataa 49586933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 8933802 - 8933863
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||||| || |||||||||||||||| ||| ||  |||||| ||| |||||||||||||    
T  8933802 taagttatcttggagagcttatgaaaataagctaaatgcaacttttggacatgtcataagct 8933863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 12923356 - 12923311
Alignment:
Q  359 aaatatgctgaaaacaacttgtgggcatgtcataagctctctcaaa 404  Q
    ||||| |||||||||||||| ||| |||||||||||||||| ||||    
T  12923356 aaataagctgaaaacaacttatggacatgtcataagctctcccaaa 12923311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 27290951 - 27290895
Alignment:
Q  340 tatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    ||||||| |||| | ||| ||||| |||||||||| ||| |||||||||||||||||    
T  27290951 tatcctgcagagttcatggaaataagctgaaaacagcttatgggcatgtcataagct 27290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 51206540 - 51206492
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||||||||||| |||||||||||||| |||  | ||||||||||    
T  51206540 agagcttatgaaaataagctgaaaacaacttttggataggtcataagct 51206492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 5131336 - 5131262
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaa--gttatcctgtagagcttatgaaaatatgctgaaaacaactt 378  Q
    ||||||||| |||| ||| |||||||||||||  | ||||||| |||||||||| ||||| ||||||||||||||    
T  5131336 agataaaataaagttaaaatgttttcatgtaaaagctatcctggagagcttatggaaataagctgaaaacaactt 5131262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 4691880 - 4691922
Alignment:
Q  352 cttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    |||||||||||| |||||||||||| | |||||||||||||||    
T  4691880 cttatgaaaataagctgaaaacaacatatgggcatgtcataag 4691922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 394
Target Start/End: Original strand, 6428006 - 6428092
Alignment:
Q  308 ataaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataag 394  Q
    ||||||| |||||||||||| | ||| |||| ||   || |||||||||| ||||||||| ||| |||||| ||| |||||||||||    
T  6428006 ataaaataaagtcaaactgtatccatataagctactatgaagagcttatggaaatatgcttaaatcaacttatggacatgtcataag 6428092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 18628610 - 18628555
Alignment:
Q  321 aaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaactt 378  Q
    |||||||||||||  |||||||| || |||||||||| ||||| ||||||||||||||    
T  18628610 aaactgttttcat--aagttatcttggagagcttatggaaataagctgaaaacaactt 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 4191710 - 4191776
Alignment:
Q  310 aaaattaagtcaaactgttttcatgtaagttatcctgtagagcttatgaaaatatgctgaaaacaactt 378  Q
    ||||| |||||||||||||||||  |||||||||||| ||||| |||| ||||| ||||| || |||||    
T  4191710 aaaataaagtcaaactgttttca--taagttatcctggagagcgtatggaaataagctgagaagaactt 4191776  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 43824297 - 43824358
Alignment:
Q  334 gtaagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagc 395  Q
    ||||||||||||| | |||||||| ||||| |||||||||||||| ||  |||| |||||||    
T  43824297 gtaagttatcctggaaagcttatggaaataagctgaaaacaacttatgaacatgccataagc 43824358  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 7694065 - 7694009
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcat 391  Q
    |||||||||||| |||| ||||| ||||| |||||||||||||| ||  ||||||||    
T  7694065 taagttatcctggagagtttatggaaataagctgaaaacaacttatgaacatgtcat 7694009  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 30207727 - 30207695
Alignment:
Q  252 taatcaagcacttatcatataagtgcttatgta 284  Q
    |||| ||||||||||||||||||||||||||||    
T  30207727 taattaagcacttatcatataagtgcttatgta 30207695  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 24097823 - 24097861
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaac 373  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  24097823 taagttatcctggagagcttatgaaaataagctgaaaac 24097861  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 9395147 - 9395184
Alignment:
Q  337 agttatcctgtagagcttatgaaaatatgctgaaaaca 374  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  9395147 agttattctgtagagcttatgaaaataagctgaaaaca 9395184  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 1647264 - 1647312
Alignment:
Q  348 agagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||||||||| ||||| |||||||||| ||| || ||||||||||||||    
T  1647264 agagcttatggaaataagctgaaaacagcttatgagcatgtcataagct 1647312  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 33192159 - 33192195
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttat 342  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  33192159 agataaaataaagtcaaactgttttcatataagttat 33192195  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 33942116 - 33942148
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaag 338  Q
    ||||||||| |||||||||||||||||||||||    
T  33942116 agataaaataaagtcaaactgttttcatgtaag 33942148  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 41852007 - 41851971
Alignment:
Q  306 agataaaattaagtcaaactgttttcatgtaagttat 342  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  41852007 agataaaattaagtcaaattgttttcatataagttat 41851971  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 306341 - 306402
Alignment:
Q  335 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataagct 396  Q
    |||| ||||||  |||||||||| || || |||||||||| ||| |||||||||||||||||    
T  306341 taagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagct 306402  T

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