View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0750_low_28 (Length: 408)
Name: NF0750_low_28
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 46 - 401
Target Start/End: Complemental strand, 35323111 - 35322756
Alignment:
| Q |
46 |
gcataggtcctatatgggtttactcactcacaagtttacacgtatgtaccatgtgaattcaatcatggtgaaaaaactgcaatgtggaatctcaaccgct |
145 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35323111 |
gcatatgtcctatatgggtttactcactcacaagtttacacgtatgtaccatgtgaattcaatcatggtgaaaaaactgcaatgtggaatctcaaccgct |
35323012 |
T |
|
| Q |
146 |
agttatcaatcactacacatgctaaatctattctcgtgacaaaaatatttcctaaaggaagaaaatggtcatgaggtatcattcacaagagcacatggtg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35323011 |
agttatcaatcactacacatgctaaatctattctcgtgacaaaaatatttcctaaaggaagaaaatggtcatgaggtatcattcacaagagcacatggtg |
35322912 |
T |
|
| Q |
246 |
aaaagactgagggtttctatatttgtccatcaagaccaatccacaaataaagagaacttggtaaattatagaatttctttcaataaacgttcatatagtt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35322911 |
aaaagactgagggtttctatatttgtccatcaagaccaatccacaaataaagagaacttggtaaattatagaatttctttcaataaacgttcatatagtt |
35322812 |
T |
|
| Q |
346 |
ataaattccataagtcacataaattacattctcaaaattattacaggtctgtgctg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35322811 |
ataaattccataagtcacataaattacattctcaaaattattacaggtttgtgctg |
35322756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5047 times since January 2019
Visitors: 4845