View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_29 (Length: 401)
Name: NF0750_low_29
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 82 - 306
Target Start/End: Original strand, 48416649 - 48416873
Alignment:
| Q |
82 |
agcatagggactcgagaatgtgtgctgcaataccacatccaaaacaacatggggactccaaaatttgtgctgcatattatagaataaaaatcttagctca |
181 |
Q |
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| T |
48416649 |
agcatagggactcgagaatgtgtgctgcaatatcacatccaaaacaacacggggactccaaaatttgtgctgcatattatagaataaaaatcttagctca |
48416748 |
T |
|
| Q |
182 |
atgtccaaacatagacttggccccggctagctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggct |
281 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48416749 |
atgtccaaacatagacttggccccagctagctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggct |
48416848 |
T |
|
| Q |
282 |
ttctagagtcatcacggttgccttt |
306 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
48416849 |
ttctagagtcatcacggttgccttt |
48416873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 82 - 298
Target Start/End: Original strand, 48421897 - 48422117
Alignment:
| Q |
82 |
agcatagggactcgagaatgtgtgctgcaataccacatccaaaacaacatggggactccaa-aatttgtgctgcatattatagaataaaaatcttagctc |
180 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||||||||||||| | |||||||| | |||||||| ||||||||||||||||||||||||||||| |
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| T |
48421897 |
agcatggggagtcgagaatttgtgctgcaataccacatccaaaacagtacggggactcagagaatttgtgttgcatattatagaataaaaatcttagctc |
48421996 |
T |
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| Q |
181 |
aatgtccaaacatagacttggccccggctag---ctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtg |
277 |
Q |
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||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
48421997 |
aatgtccaaacatagacctggcctccgctactacctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggatttgcagatatgggtg |
48422096 |
T |
|
| Q |
278 |
ggctttctagagtcatcacgg |
298 |
Q |
| |
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| || |||||||||||||||| |
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| T |
48422097 |
gactctctagagtcatcacgg |
48422117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 281
Target Start/End: Original strand, 48410398 - 48410523
Alignment:
| Q |
159 |
tatagaataaaaatcttagctcaatgtccaaacatagacttggccccggct---agctcctgctaacatcccaacctcataagagtgtgcatcaaattta |
255 |
Q |
| |
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|||||||||||| |||||||| ||||||| | |||||| ||||| | || ||||||||||| ||||||||||||| |||||| |||||||||| | |
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| T |
48410398 |
tatagaataaaattcttagcttgatgtccagatatagacctggcctccacttgtagctcctgctagcatcccaacctcacaagagtttgcatcaaatctg |
48410497 |
T |
|
| Q |
256 |
agtggaattgcagatatgagtgggct |
281 |
Q |
| |
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|||||||||||||||| ||||||| |
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|
| T |
48410498 |
catggaattgcagatatgtgtgggct |
48410523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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