View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_30 (Length: 400)

Name: NF0750_low_30
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_30
NF0750_low_30
[»] chr3 (20 HSPs)
chr3 (107-307)||(5114702-5114888)
chr3 (107-307)||(5110972-5111158)
chr3 (56-108)||(48519655-48519707)
chr3 (52-109)||(26035812-26035869)
chr3 (55-107)||(188725-188777)
chr3 (49-108)||(15315272-15315332)
chr3 (48-108)||(5240970-5241030)
chr3 (52-108)||(8396752-8396808)
chr3 (48-107)||(30766488-30766547)
chr3 (55-105)||(16496366-16496416)
chr3 (52-110)||(26100775-26100833)
chr3 (48-86)||(36164850-36164888)
chr3 (52-109)||(18688660-18688717)
chr3 (49-109)||(22759055-22759115)
chr3 (66-108)||(4137399-4137441)
chr3 (66-108)||(19406625-19406667)
chr3 (66-108)||(22477906-22477948)
chr3 (66-108)||(35861002-35861044)
chr3 (51-108)||(41053789-41053846)
chr3 (55-107)||(39576523-39576575)
[»] scaffold0376 (1 HSPs)
scaffold0376 (49-108)||(10783-10842)
[»] chr5 (26 HSPs)
chr5 (48-109)||(7863527-7863588)
chr5 (48-109)||(9702691-9702752)
chr5 (48-108)||(9809820-9809880)
chr5 (48-107)||(12702061-12702120)
chr5 (55-108)||(22602634-22602687)
chr5 (55-108)||(36366124-36366177)
chr5 (55-107)||(42819330-42819382)
chr5 (49-108)||(32977101-32977160)
chr5 (48-85)||(12763099-12763136)
chr5 (70-111)||(35539206-35539247)
chr5 (55-109)||(2366838-2366892)
chr5 (55-109)||(8350239-8350293)
chr5 (55-105)||(19365934-19365984)
chr5 (66-107)||(20995179-20995220)
chr5 (52-108)||(30181398-30181456)
chr5 (56-108)||(34719448-34719500)
chr5 (72-108)||(39954679-39954715)
chr5 (48-83)||(4802323-4802358)
chr5 (56-107)||(25695539-25695590)
chr5 (66-109)||(43136272-43136315)
chr5 (66-108)||(752055-752097)
chr5 (48-109)||(18037228-18037290)
chr5 (55-109)||(38041489-38041543)
chr5 (66-107)||(3086433-3086474)
chr5 (55-108)||(13596908-13596961)
chr5 (49-109)||(13353724-13353783)
[»] chr4 (31 HSPs)
chr4 (48-113)||(26870023-26870088)
chr4 (48-108)||(15650485-15650545)
chr4 (55-107)||(43014591-43014643)
chr4 (48-107)||(3839095-3839154)
chr4 (48-107)||(16895932-16895991)
chr4 (55-108)||(19591070-19591123)
chr4 (48-108)||(35828681-35828741)
chr4 (66-109)||(37700899-37700942)
chr4 (52-109)||(5759328-5759385)
chr4 (55-108)||(10259322-10259375)
chr4 (55-108)||(21565079-21565132)
chr4 (55-108)||(26924262-26924315)
chr4 (55-108)||(29706149-29706202)
chr4 (55-108)||(43332600-43332653)
chr4 (66-110)||(16653195-16653239)
chr4 (48-108)||(23992319-23992379)
chr4 (52-108)||(35707657-35707713)
chr4 (55-107)||(51452667-51452719)
chr4 (55-107)||(56541755-56541807)
chr4 (66-109)||(2118191-2118234)
chr4 (56-107)||(39713496-39713547)
chr4 (66-112)||(5271597-5271643)
chr4 (66-108)||(8964834-8964876)
chr4 (66-108)||(9887270-9887312)
chr4 (66-108)||(17700121-17700163)
chr4 (66-108)||(29713824-29713866)
chr4 (66-107)||(574177-574218)
chr4 (66-107)||(3759280-3759321)
chr4 (66-107)||(12680630-12680671)
chr4 (51-107)||(5483019-5483075)
chr4 (55-107)||(24077393-24077445)
[»] scaffold0249 (1 HSPs)
scaffold0249 (48-108)||(24918-24978)
[»] chr8 (32 HSPs)
chr8 (48-108)||(2961008-2961068)
chr8 (48-108)||(12249911-12249971)
chr8 (48-108)||(23626055-23626115)
chr8 (48-108)||(27272668-27272728)
chr8 (48-108)||(39445236-39445296)
chr8 (55-107)||(11697099-11697151)
chr8 (56-108)||(41531769-41531821)
chr8 (66-108)||(32847197-32847239)
chr8 (66-110)||(4464350-4464395)
chr8 (48-108)||(41907992-41908052)
chr8 (55-109)||(12660956-12661010)
chr8 (56-109)||(18375556-18375609)
chr8 (56-109)||(41158634-41158687)
chr8 (55-108)||(44213035-44213088)
chr8 (56-109)||(44380711-44380764)
chr8 (48-107)||(29434254-29434314)
chr8 (55-107)||(30548281-30548333)
chr8 (66-110)||(36778480-36778524)
chr8 (48-108)||(39204847-39204907)
chr8 (66-107)||(42244334-42244377)
chr8 (48-83)||(19252435-19252470)
chr8 (48-83)||(19325619-19325654)
chr8 (48-107)||(28940714-28940773)
chr8 (66-108)||(8160419-8160461)
chr8 (66-108)||(8763013-8763055)
chr8 (66-107)||(1945188-1945229)
chr8 (51-108)||(2680235-2680292)
chr8 (68-109)||(7391324-7391365)
chr8 (55-108)||(20662917-20662970)
chr8 (66-107)||(40586443-40586484)
chr8 (53-85)||(21543221-21543253)
chr8 (52-108)||(24055827-24055883)
[»] chr6 (22 HSPs)
chr6 (48-108)||(33319031-33319091)
chr6 (48-111)||(1932322-1932385)
chr6 (49-109)||(2624720-2624780)
chr6 (56-108)||(18389167-18389219)
chr6 (49-108)||(5753126-5753185)
chr6 (48-85)||(8615065-8615102)
chr6 (55-108)||(250113-250166)
chr6 (55-108)||(4425897-4425950)
chr6 (55-108)||(11207646-11207699)
chr6 (55-108)||(12579776-12579829)
chr6 (48-85)||(22975740-22975777)
chr6 (48-85)||(23812624-23812661)
chr6 (52-108)||(6966236-6966292)
chr6 (56-108)||(24447785-24447837)
chr6 (49-108)||(11272745-11272804)
chr6 (49-83)||(11470797-11470831)
chr6 (66-107)||(4110061-4110102)
chr6 (56-109)||(33300658-33300711)
chr6 (68-112)||(13456730-13456774)
chr6 (56-108)||(15043827-15043879)
chr6 (55-107)||(33979174-33979226)
chr6 (56-108)||(35160113-35160165)
[»] chr2 (19 HSPs)
chr2 (49-108)||(17026100-17026158)
chr2 (56-108)||(7364770-7364822)
chr2 (48-108)||(30922097-30922157)
chr2 (66-107)||(19126000-19126041)
chr2 (55-104)||(7983990-7984037)
chr2 (48-108)||(17092284-17092341)
chr2 (49-107)||(25124044-25124102)
chr2 (56-108)||(4289027-4289079)
chr2 (55-107)||(11866217-11866269)
chr2 (57-108)||(22374080-22374132)
chr2 (55-107)||(35357610-35357662)
chr2 (66-108)||(28609953-28609995)
chr2 (55-108)||(1691426-1691479)
chr2 (56-109)||(9542628-9542681)
chr2 (48-85)||(10820995-10821032)
chr2 (48-85)||(16884230-16884267)
chr2 (48-85)||(17041920-17041957)
chr2 (55-107)||(3711147-3711199)
chr2 (56-108)||(32725990-32726042)
[»] scaffold0759 (1 HSPs)
scaffold0759 (52-108)||(3423-3479)
[»] scaffold0103 (1 HSPs)
scaffold0103 (48-108)||(13005-13065)
[»] scaffold0088 (1 HSPs)
scaffold0088 (48-108)||(52692-52752)
[»] chr7 (24 HSPs)
chr7 (55-111)||(27840503-27840559)
chr7 (66-107)||(3795712-3795753)
chr7 (55-108)||(12960596-12960649)
chr7 (48-108)||(9226020-9226080)
chr7 (48-108)||(38434277-38434337)
chr7 (48-108)||(42996923-42996983)
chr7 (48-107)||(1483720-1483779)
chr7 (49-108)||(17817702-17817761)
chr7 (48-110)||(42298805-42298867)
chr7 (55-108)||(19033645-19033698)
chr7 (49-110)||(19049238-19049299)
chr7 (55-108)||(20720938-20720991)
chr7 (55-108)||(20765600-20765653)
chr7 (55-108)||(29491178-29491231)
chr7 (56-109)||(31896812-31896865)
chr7 (52-109)||(39647980-39648036)
chr7 (52-108)||(691275-691331)
chr7 (48-88)||(19124126-19124166)
chr7 (56-108)||(21669231-21669283)
chr7 (56-108)||(39278228-39278280)
chr7 (57-108)||(48527408-48527462)
chr7 (66-109)||(24682276-24682319)
chr7 (56-105)||(9151409-9151458)
chr7 (52-109)||(27732951-27733008)
[»] chr1 (27 HSPs)
chr1 (48-108)||(28565429-28565489)
chr1 (48-108)||(28631793-28631853)
chr1 (66-112)||(18815127-18815173)
chr1 (55-108)||(3929747-3929800)
chr1 (48-108)||(29693370-29693430)
chr1 (48-87)||(15317628-15317667)
chr1 (55-105)||(13662121-13662171)
chr1 (66-108)||(17672387-17672429)
chr1 (56-110)||(20767546-20767600)
chr1 (55-108)||(26429124-26429175)
chr1 (52-109)||(47137845-47137902)
chr1 (66-109)||(1828438-1828479)
chr1 (56-108)||(4893958-4894010)
chr1 (66-105)||(16302147-16302187)
chr1 (66-108)||(1375982-1376024)
chr1 (66-108)||(10763588-10763630)
chr1 (66-108)||(19320420-19320462)
chr1 (66-108)||(22194467-22194509)
chr1 (66-108)||(24289200-24289242)
chr1 (66-108)||(28573160-28573202)
chr1 (66-108)||(29840689-29840731)
chr1 (66-108)||(33074231-33074273)
chr1 (66-108)||(38896815-38896857)
chr1 (66-108)||(42682592-42682634)
chr1 (55-108)||(23909715-23909768)
chr1 (56-108)||(29184477-29184529)
chr1 (66-110)||(44407294-44407338)
[»] scaffold0051 (1 HSPs)
scaffold0051 (48-107)||(61695-61754)
[»] scaffold0385 (1 HSPs)
scaffold0385 (66-105)||(4187-4226)
[»] scaffold0006 (1 HSPs)
scaffold0006 (55-105)||(151883-151933)
[»] scaffold1891 (2 HSPs)
scaffold1891 (55-108)||(1207-1260)
scaffold1891 (66-108)||(330-373)
[»] scaffold0057 (1 HSPs)
scaffold0057 (56-109)||(17399-17452)
[»] scaffold0069 (1 HSPs)
scaffold0069 (56-108)||(14638-14690)
[»] scaffold0122 (1 HSPs)
scaffold0122 (66-109)||(5400-5442)
[»] scaffold0381 (1 HSPs)
scaffold0381 (66-108)||(11232-11274)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 107 - 307
Target Start/End: Complemental strand, 5114888 - 5114702
Alignment:
Q  107 ttaatacacacaataaatgataaatgtatcaacttaatatgttactcgatacatctaataacatccatatttgctaatgctttctctccctaactaatgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||| |||||||||||||||||    
T  5114888 ttaatacacacaataaatgataaatgtatcaacttaatatgttactcgatacatctaataacat--------------gcttgctctccctaactaatgc 5114803  T
Q  207 tttctcctccatgtatgtatttaatgatatgcattatgacactcattaaagtagatctactataacaacattacacaactaaggataaacaaaggaaaat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  5114802 tttctcctccatgtatgtatttaatgatatgcattatgacactcattaaagtagatctacaataacaacattacacaactaaggataaacaaagggaaat 5114703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 107 - 307
Target Start/End: Complemental strand, 5111158 - 5110972
Alignment:
Q  107 ttaatacacacaataaatgataaatgtatcaacttaatatgttactcgatacatctaataacatccatatttgctaatgctttctctccctaactaatgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||| |||||||||||||||||    
T  5111158 ttaatacacacaataaatgataaatgtatcaacttaatatgttactcgatacatctaataacat--------------gcttgctctccctaactaatgc 5111073  T
Q  207 tttctcctccatgtatgtatttaatgatatgcattatgacactcattaaagtagatctactataacaacattacacaactaaggataaacaaaggaaaat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  5111072 tttctcctccatgtatgtatttaatgatatgcattatgacactcattaaagtagatctacaataacaacattatacaactaaggataaacaaagggaaat 5110973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 48519707 - 48519655
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  48519707 tttttaaaaaatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 48519655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 26035869 - 26035812
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||| ||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  26035869 aaatattttacaagatacattattcaacccgtgcgacgcacgggtttgtaactagtta 26035812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 188725 - 188777
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  188725 ttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagt 188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 15315332 - 15315272
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgc-ttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  15315332 aacaaattttttacaagatacgttattcaacccgtgcgaaagcacgggtttgtaactagtt 15315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 5240970 - 5241030
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| |||||||||| | ||||||||||||||||||   ||||||||||||||||||||    
T  5240970 gaacaatttttttacaaaacacgttattcaacccgtgcgaagcacgggtttgtaactagtt 5241030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 8396752 - 8396808
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||| || ||||||||||||||||||||   ||||||||||||||||||||    
T  8396752 aaattttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 8396808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 30766488 - 30766547
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||| | |||||||||||||||||||||||||||||   |||| ||||||||||||||    
T  30766488 gaacaattgttttacaagatacgttattcaacccgtgcgaagcacaggtttgtaactagt 30766547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 16496366 - 16496416
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaacta 105  Q
    |||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  16496366 ttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaacta 16496416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 26100833 - 26100775
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagttaa 110  Q
    |||||||||| || |||| |||||||||||||||   ||||||||||||||||||||||    
T  26100833 aaattttttaaaaaatacattattcaacccgtgcgaagcacgggtttgtaactagttaa 26100775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 36164888 - 36164850
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgct 86  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  36164888 gaacaatttttttacaagatacgttattcaacccgtgct 36164850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 18688660 - 18688717
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||||| |  ||||||||||||||||||||   |||||||||||||||||||||    
T  18688660 aaattttttaaataatacgttattcaacccgtgcgaagcacgggtttgtaactagtta 18688717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 22759115 - 22759055
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||| |||||||||| ||| ||| ||||||||||||   |||||||||||||||||||||    
T  22759115 aacaatttttttacaaaatatgttcttcaacccgtgcgaagcacgggtttgtaactagtta 22759055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 4137441 - 4137399
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  4137441 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 4137399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 19406667 - 19406625
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| ||| |||| |||||||||||||||||||||||||||    
T  19406667 atacgtcattgaacctgtgcttcgcacgggtttgtaactagtt 19406625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 22477906 - 22477948
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  22477906 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 22477948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 35861002 - 35861044
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  35861002 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 35861044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 41053789 - 41053846
Alignment:
Q  51 caaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||| || ||| || |||||||||||||   ||||||||||||||||||||    
T  41053789 caaattttttaaaaaatatgtaattcaacccgtgcgaagcacgggtttgtaactagtt 41053846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 39576523 - 39576575
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||  |||||||||||||| |||||   |||||||||||||||||||    
T  39576523 ttttttacagaatacgttattcaactcgtgcgaagcacgggtttgtaactagt 39576575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 10842 - 10783
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10842 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 10783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 7863588 - 7863527
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  7863588 gaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtta 7863527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 9702691 - 9702752
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||    
T  9702691 gaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtta 9702752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 9809880 - 9809820
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||    
T  9809880 gaacaaattttttacaagatacattattcaacccgtgcgaagcacgggtttgtaactagtt 9809820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 12702120 - 12702061
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||    
T  12702120 gaacaaattttttacaagatacattattcaacccgtgcgaagcacgggtttgtaactagt 12702061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 22602687 - 22602634
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  22602687 ttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 22602634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 36366177 - 36366124
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  36366177 ttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 36366124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 42819382 - 42819330
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  42819382 ttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagt 42819330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 32977160 - 32977101
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||| |||||||||||||||||||||||||||||||   |||| |||||||||||||||    
T  32977160 aacaatttttttacaagatacgttattcaacccgtgcgaagcaccggtttgtaactagtt 32977101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 12763136 - 12763099
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgc 85  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12763136 gaacaaattttttacaagatacgttattcaacccgtgc 12763099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 35539247 - 35539206
Alignment:
Q  70 gttattcaacccgtgcttcgcacgggtttgtaactagttaat 111  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  35539247 gttattgaacccgtgcttcgcacgggtttgtaactagttaat 35539206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 2366892 - 2366838
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||||||||||||||||||||||||||    ||| ||||||||||||||||    
T  2366892 ttttttacaagatacgttattcaacccgtgcgaaacacaggtttgtaactagtta 2366838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 8350239 - 8350293
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||||||||||||||||||||||| |   |||||||||| ||||||||||    
T  8350239 ttttttacaagatacgttattcaacccgtacgaagcacgggtttataactagtta 8350293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 19365934 - 19365984
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaacta 105  Q
    ||||||||||||||||||||||||||| |||   |||||||||||||||||    
T  19365934 ttttttacaagatacgttattcaacccatgcgaagcacgggtttgtaacta 19365984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 20995220 - 20995179
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  20995220 atacgttattgaactcgtgcttcgcacgggtttgtaactagt 20995179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 30181398 - 30181456
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgc---ttcgcacgggtttgtaactagtt 108  Q
    |||||||||| || ||||||||||||||||||||   |||||||||||||||||||||||    
T  30181398 aaattttttaaaa-atacgttattcaacccgtgcgaattcgcacgggtttgtaactagtt 30181456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 34719448 - 34719500
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||||   ||||||||||||||||||||    
T  34719448 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 34719500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 39954679 - 39954715
Alignment:
Q  72 tattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||| |||||||||    
T  39954679 tattcaacccgtgcttcgcacgggtttataactagtt 39954715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 4802358 - 4802323
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgt 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  4802358 gaacaaattttttacaagatacgtaattcaacccgt 4802323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 25695590 - 25695539
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||| || ||||||||||||||||||||   |||||||||||||||||||    
T  25695590 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 25695539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 43136315 - 43136272
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  43136315 atacgttattcaacccgtgcaaagcacgggtttgtaactagtta 43136272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 752097 - 752055
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  752097 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 752055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 18037290 - 18037228
Alignment:
Q  48 gaacaaattttttacaagatacgttat-tcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||| ||||||||| |||||||||| |||||||||||   ||||| |||||||||||||||    
T  18037290 gaacaatttttttacatgatacgttatctcaacccgtgcgaagcacgagtttgtaactagtta 18037228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 38041543 - 38041489
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||||| ||| ||| ||||||||||||   |||||||||||||||||||||    
T  38041543 ttttttacaaaatatgttcttcaacccgtgcgaagcacgggtttgtaactagtta 38041489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 3086474 - 3086433
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  3086474 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 3086433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 13596908 - 13596961
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||| |||||||||||||   ||||||||||||||||||||    
T  13596908 ttttttaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagtt 13596961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 13353724 - 13353783
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||| |||||||||| ||||||||||||||| ||||   |||||||||| ||||||||||    
T  13353724 aacaatttttttacaaaatacgttattcaacctgtgcgaagcacgggttt-taactagtta 13353783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 26870088 - 26870023
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagttaatac 113  Q
    ||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||    
T  26870088 gaacaaattttttacaagatatgttattcaacccgtgcaaagcacgggtttgtaactagttaatac 26870023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 15650545 - 15650485
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  15650545 gaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 15650485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 43014643 - 43014591
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  43014643 ttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagt 43014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 3839154 - 3839095
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||| ||||||||||||||||||||||||||| |||   |||||||||||||||||||    
T  3839154 gaacaatttttttacaagatacgttattcaacccttgcgaagcacgggtttgtaactagt 3839095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 16895932 - 16895991
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||| |||||||||||||||||||||||||||||||   ||| |||||||||||||||    
T  16895932 gaacaatttttttacaagatacgttattcaacccgtgcgaagcatgggtttgtaactagt 16895991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 19591070 - 19591123
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||| |||||||||   ||||||||||||||||||||    
T  19591070 ttttttacaagatacgttattaaacccgtgcgaagcacgggtttgtaactagtt 19591123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 35828741 - 35828681
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| ||||||| || |||||||||| |||||||||||||||| ||||||||| |||||    
T  35828741 gaacaatttttttaaaaaatacgttatttaacccgtgcttcgcacaggtttgtaagtagtt 35828681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 37700942 - 37700899
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  37700942 atacgttattgaacccgtgcttcgcacggatttgtaactagtta 37700899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 5759328 - 5759385
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||||| |  ||||||||||||||||||||   |||||||||||||||||||||    
T  5759328 aaattttttaaataatacgttattcaacccgtgcgaagcacgggtttgtaactagtta 5759385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 10259375 - 10259322
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  10259375 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 10259322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 21565079 - 21565132
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  21565079 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 21565132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 26924315 - 26924262
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  26924315 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 26924262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 29706202 - 29706149
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||||||| ||||||   |||||||||| |||||||||    
T  29706202 ttttttacaagatacgttattcaatccgtgcgaagcacgggtttataactagtt 29706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 43332600 - 43332653
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  43332600 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 43332653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 16653195 - 16653239
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagttaa 110  Q
    ||||||||||||||||||||   ||||||||||||||||||||||    
T  16653195 atacgttattcaacccgtgcaaagcacgggtttgtaactagttaa 16653239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 23992379 - 23992319
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||| | |||||||||||||||||||||    ||| |||||||||||||||    
T  23992379 gaacaaattttttaaacgatacgttattcaacccgtgcgaaacacaggtttgtaactagtt 23992319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 35707713 - 35707657
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||| | || ||||||||||||||||||||   ||||||||||||||||||||    
T  35707713 aaatttttaaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 35707657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 51452667 - 51452719
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||| || |||||||||| |||||||||  ||||||||||||||||||||    
T  51452667 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagt 51452719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 56541755 - 56541807
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||| ||||||||||||||||||||||   |||| ||||||||||||||    
T  56541755 ttttttacgagatacgttattcaacccgtgcgaagcacaggtttgtaactagt 56541807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 2118191 - 2118234
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  2118191 atacgttattcaacccgtgcgaagcacgggtttgtaactagtta 2118234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 39713547 - 39713496
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||| || ||||||||||||||||||||   |||||||||||||||||||    
T  39713547 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 39713496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 5271643 - 5271597
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagttaata 112  Q
    |||||||||| |||||||||   ||||||||||||||||||||||||    
T  5271643 atacgttattgaacccgtgcgaagcacgggtttgtaactagttaata 5271597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 8964834 - 8964876
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  8964834 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 8964876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 9887312 - 9887270
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  9887312 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 9887270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 17700121 - 17700163
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  17700121 atacgttattgaacccgtgcttggcatgggtttgtaactagtt 17700163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 29713824 - 29713866
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  29713824 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 29713866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 574218 - 574177
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  574218 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 574177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 3759280 - 3759321
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  3759280 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 3759321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 12680671 - 12680630
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  12680671 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 12680630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 5483019 - 5483075
Alignment:
Q  51 caaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||| | || |||||| |||||||||||||   |||||||||||||||||||    
T  5483019 caaatttttaaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagt 5483075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 24077445 - 24077393
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||| || |||||||||| |||| ||||  ||||||||||||||||||||    
T  24077445 ttttttataaaatacgttattaaacctgtgcaacgcacgggtttgtaactagt 24077393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 24978 - 24918
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  24978 gaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 24918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 2961068 - 2961008
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  2961068 gaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 2961008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 12249971 - 12249911
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  12249971 gaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 12249911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 23626115 - 23626055
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  23626115 gaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 23626055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 27272668 - 27272728
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||    
T  27272668 gaacaaatttattacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 27272728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 39445236 - 39445296
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  39445236 gaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 39445296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 11697099 - 11697151
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  11697099 ttttttacaagatacgttattcaacccgtgcaaagcacgggtttgtaactagt 11697151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 41531821 - 41531769
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  41531821 tttttataaaatacgttattcaacccgtgtttcgcacgggtttgtaactagtt 41531769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 32847197 - 32847239
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  32847197 atacgttattcaacccgtgctttgcacgggtttgtaactagtt 32847239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 4464395 - 4464350
Alignment:
Q  66 atacgttattcaacccgtgctt-cgcacgggtttgtaactagttaa 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  4464395 atacgttattcaacccgtgctttcgcacgggtttgtaactagttaa 4464350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 41907992 - 41908052
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||| ||||||  |||||||||||||||   ||||||||||||||||||||    
T  41907992 gaacaaattttttataagatatattattcaacccgtgcgaagcacgggtttgtaactagtt 41908052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 12661010 - 12660956
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||||||||||||||| ||||| |||   |||||||||||||||||||||    
T  12661010 ttttttacaagatacgttatttaacccatgcgaagcacgggtttgtaactagtta 12660956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 18375609 - 18375556
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||| || ||||||||||||||||||||   |||||||||||||||||||||    
T  18375609 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtta 18375556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 41158634 - 41158687
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||| || ||||||||||||||||||||   |||||||||||||||||||||    
T  41158634 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtta 41158687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 44213088 - 44213035
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  44213088 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 44213035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 44380764 - 44380711
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||| || |||||||||| |||| ||||||| ||||||||||||||||||||    
T  44380764 tttttaaaaaatacgttatttaacctgtgcttcacacgggtttgtaactagtta 44380711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 29434254 - 29434314
Alignment:
Q  48 gaacaaattttttacaagatacg-ttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||| |||||||||||||||| ||||||||||||||    |||||||||||||||||||    
T  29434254 gaacaatttttttacaagatacgtttattcaacccgtgtgaagcacgggtttgtaactagt 29434314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 30548333 - 30548281
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||| || |||||||||| |||||||||  ||||||||||||||||||||    
T  30548333 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagt 30548281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 36778480 - 36778524
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagttaa 110  Q
    ||||||||||||||||||||   ||||||||||||||||||||||    
T  36778480 atacgttattcaacccgtgcgaagcacgggtttgtaactagttaa 36778524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 39204847 - 39204907
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||| ||||||||| |||||| ||||||||||| ||||   ||||||||||||||||||||    
T  39204847 gaactaattttttataagataagttattcaacctgtgcaaagcacgggtttgtaactagtt 39204907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 42244377 - 42244334
Alignment:
Q  66 atacgttattcaacccgtgc--ttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  42244377 atacgttattcaacccgtgcgattcgcacgggtttgtaactagt 42244334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 19252435 - 19252470
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgt 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  19252435 gaacaaattttttacaagatacgtaattcaacccgt 19252470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 19325619 - 19325654
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgt 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  19325619 gaacaaattttttacaagatacgtaattcaacccgt 19325654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 28940773 - 28940714
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||||||| ||  ||||| |||||||||||||   |||||||||||||||||||    
T  28940773 gaacaaattttttaaaaagtacgtaattcaacccgtgcgaagcacgggtttgtaactagt 28940714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 8160461 - 8160419
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  8160461 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 8160419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 8763013 - 8763055
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  8763013 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 8763055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 1945188 - 1945229
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  1945188 atacgttattcaacccgtgcaaagcacgggtttgtaactagt 1945229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 2680292 - 2680235
Alignment:
Q  51 caaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||| | || |||||| |||||||||||||   ||||||||||||||||||||    
T  2680292 caaatttttaaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagtt 2680235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 7391324 - 7391365
Alignment:
Q  68 acgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  7391324 acgttattcaacccgtgcgaagcacgggtttgtaactagtta 7391365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 20662970 - 20662917
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || | |||||||| |||||||||  |||||||||||||||||||||    
T  20662970 ttttttataaaacacgttattaaacccgtgcaacgcacgggtttgtaactagtt 20662917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 40586484 - 40586443
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  40586484 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 40586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 21543221 - 21543253
Alignment:
Q  53 aattttttacaagatacgttattcaacccgtgc 85  Q
    ||||||||| |||||||||||||||||||||||    
T  21543221 aattttttataagatacgttattcaacccgtgc 21543253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 24055827 - 24055883
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||| | || ||||||||||||||| ||||   ||||||||||||||||||||    
T  24055827 aaatttttaaaaaaatacgttattcaacctgtgcgaagcacgggtttgtaactagtt 24055883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 33319031 - 33319091
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  33319031 gaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 33319091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 1932322 - 1932385
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagttaat 111  Q
    ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||    
T  1932322 gaacaaattttttacaagatacgatattcaacccgtgcgaagcacgggtttgtaactagttaat 1932385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 2624780 - 2624720
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  2624780 aacaatttttttacaagatacgttattcaacccgtgcgatgcacgggtttgtaactagtta 2624720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 18389219 - 18389167
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  18389219 tttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 18389167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 5753185 - 5753126
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||| ||||||||||||||||||||   | ||||||||||||||||||    
T  5753185 aacaaattttttacaatatacgttattcaacccgtgcgaagtacgggtttgtaactagtt 5753126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 8615065 - 8615102
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgc 85  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8615065 gaacaaattttttacaagatacgttattcaacccgtgc 8615102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 250113 - 250166
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  250113 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 250166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 4425897 - 4425950
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||| |||||||||||    |||||||||||||||||||    
T  4425897 ttttttacaagatacgttagtcaacccgtgcgaaacacgggtttgtaactagtt 4425950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 11207646 - 11207699
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||| | ||| ||||||||||||||||||||||||||||||||    
T  11207646 ttttttaaaaaatacataatttaacccgtgcttcgcacgggtttgtaactagtt 11207699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 12579829 - 12579776
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  12579829 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 12579776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 22975777 - 22975740
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgc 85  Q
    |||||| |||||||||||||||||||||||||||||||    
T  22975777 gaacaatttttttacaagatacgttattcaacccgtgc 22975740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 23812624 - 23812661
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgc 85  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23812624 gaacaatttttttacaagatacgttattcaacccgtgc 23812661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 6966292 - 6966236
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||| |  ||||||||||||||||||||   ||||||||||||||||||||    
T  6966292 aaattttttaaataatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 6966236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 24447785 - 24447837
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||||   ||||||||||||||||||||    
T  24447785 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 24447837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 11272745 - 11272804
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||| ||||||||||||||| ||||||||| |||||   |||||| |||||||||||||    
T  11272745 aacaatttttttacaagatacattattcaactcgtgcgaagcacggatttgtaactagtt 11272804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 11470831 - 11470797
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgt 83  Q
    ||||| |||||||||||||||||||||||||||||    
T  11470831 aacaatttttttacaagatacgttattcaacccgt 11470797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 4110061 - 4110102
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  4110061 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 4110102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 33300658 - 33300711
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||| ||||| ||||||||||||||   | |||||||||||||||||||    
T  33300658 tttttacaatatacgatattcaacccgtgcgaagtacgggtttgtaactagtta 33300711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 13456774 - 13456730
Alignment:
Q  68 acgttattcaacccgtgcttcgcacgggtttgtaactagttaata 112  Q
    |||||||| |||||||||   ||||||||||||||||||||||||    
T  13456774 acgttattgaacccgtgcgaagcacgggtttgtaactagttaata 13456730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 15043879 - 15043827
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||| ||||||   ||||||||||||||||||||    
T  15043879 tttttaaaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagtt 15043827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 33979174 - 33979226
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||| |||||||||| |||||||||    ||||||||||||||||||    
T  33979174 ttttttacaaaatacgttattaaacccgtgcgaaacacgggtttgtaactagt 33979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 35160113 - 35160165
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||||   |||||| |||||||||||||    
T  35160113 tttttaaaaaatacgttattcaacccgtgcgaagcacggatttgtaactagtt 35160165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 17026100 - 17026158
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  17026100 aacaaattttttacaagatatgttattcaacccgtgc-tcgcacgggtttgtaactagtt 17026158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 7364770 - 7364822
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  7364770 tttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 7364822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 30922157 - 30922097
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||    
T  30922157 gaacaaattttttacaagatacgtaattcaacccgtgtgaagcacgggtttgtaactagtt 30922097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 19126041 - 19126000
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  19126041 atacgttattgaacccgtgcttcgcacgggtttgtaactagt 19126000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 7984037 - 7983990
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaact 104  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  7984037 ttttttacaatatacgttattcaacccgt--ttcgcacgggtttgtaact 7983990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 17092284 - 17092341
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||| ||||||||||||||||   |  |||||||||||||||||    
T  17092284 gaacaaattttttacaagatatgttattcaacccgtgc---gagcgggtttgtaactagtt 17092341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 25124102 - 25124044
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||| |||||||||||||| || |||||||||||||   |||||||||||||||||||    
T  25124102 aacaatttttttacaagatatgtaattcaacccgtgcgaagcacgggtttgtaactagt 25124044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 4289079 - 4289027
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||||   ||||||||||||||||||||    
T  4289079 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 4289027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 11866269 - 11866217
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||| || |||||||||| |||||||||  ||||||||||||||||||||    
T  11866269 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagt 11866217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 22374132 - 22374080
Alignment:
Q  57 ttttacaagatacgttattcaacccgtgct-tcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||||||||||||   |||||||||||||| |||||    
T  22374132 ttttacaagatacgttattcaacccgtgctgaagcacgggtttgtaagtagtt 22374080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 35357662 - 35357610
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||| || |||||||||| |||||||||  ||||||||||||||||||||    
T  35357662 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagt 35357610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 28609953 - 28609995
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  28609953 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 28609995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 1691479 - 1691426
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||| ||| ||| ||||||||||||   ||||||||||||||||||||    
T  1691479 ttttttacaaaatatgttcttcaacccgtgcgaagcacgggtttgtaactagtt 1691426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 9542681 - 9542628
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||| || ||| ||||||||||||||||   |||||||||||||||||||||    
T  9542681 tttttaaaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagtta 9542628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 10821032 - 10820995
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgc 85  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  10821032 gaacaaattttttataagttacgttattcaacccgtgc 10820995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 16884230 - 16884267
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgc 85  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  16884230 gaacaatttttttacaaaatacgttattcaacccgtgc 16884267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 17041920 - 17041957
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgc 85  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  17041920 gaacaatttttttacaaaatacgttattcaacccgtgc 17041957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 3711147 - 3711199
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||| || |||||||||| || ||||||  ||||||||||||||||||||    
T  3711147 ttttttataaaatacgttattaaatccgtgcaacgcacgggtttgtaactagt 3711199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 32726042 - 32725990
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||| ||||| |||   |||||||||| |||||||||    
T  32726042 tttttacaagatacgttattgaacccatgcgaagcacgggtttataactagtt 32725990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 3479 - 3423
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  3479 aaattttttaaaaaatacgttattcaacccgtgcttcgcacgggtttataactagtt 3423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 13005 - 13065
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  13005 gaacaatttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 13065  T

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Target: scaffold0088 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 52752 - 52692
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  52752 gaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 52692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 27840503 - 27840559
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagttaat 111  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  27840503 ttttttacaagatacgttattcaacccgtgcaaagcacgggtttgtaactagttaat 27840559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 3795712 - 3795753
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3795712 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 3795753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 12960596 - 12960649
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  12960596 ttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 12960649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 9226080 - 9226020
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| |||||||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  9226080 gaacaatttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 9226020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 38434337 - 38434277
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| |||||||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  38434337 gaacaatttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 38434277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 42996923 - 42996983
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||| ||||||||||| ||||   ||||||||||||||||||||    
T  42996923 gaacaaattttttacaagatatgttattcaacctgtgcgaagcacgggtttgtaactagtt 42996983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 1483720 - 1483779
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    |||||| | |||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  1483720 gaacaattattttacaaaatatgttattaaacccgtgcttcgcacgggtttgtaactagt 1483779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 17817702 - 17817761
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||| |||||||||| | ||||||||||||||||||   ||||||||||||||||||||    
T  17817702 aacaatttttttacaaaacacgttattcaacccgtgcgaagcacgggtttgtaactagtt 17817761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 42298867 - 42298805
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagttaa 110  Q
    |||||| ||||||||||||||||||||||||||||||     |||| ||||||||||||||||    
T  42298867 gaacaatttttttacaagatacgttattcaacccgtgtaaaacacgagtttgtaactagttaa 42298805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 19033698 - 19033645
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  19033698 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 19033645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 19049299 - 19049238
Alignment:
Q  49 aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagttaa 110  Q
    ||||| |||||||||| | ||||||||||||||||||   | ||||||||||||||||||||    
T  19049299 aacaatttttttacaaaacacgttattcaacccgtgcgaagtacgggtttgtaactagttaa 19049238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 20720938 - 20720991
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  20720938 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 20720991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 20765600 - 20765653
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  20765600 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 20765653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 29491178 - 29491231
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  29491178 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 29491231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 31896865 - 31896812
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||| || ||||||||||||||||||||   |||||||||||||||||||||    
T  31896865 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtta 31896812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 39648036 - 39647980
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||||| || ||||||||||||||||||||   |||||||||||||||||||||    
T  39648036 aaattttttaaaa-atacgttattcaacccgtgcgaagcacgggtttgtaactagtta 39647980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 691275 - 691331
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||| | || ||||||||||||||||||||   ||||||||||||||||||||    
T  691275 aaatttttaaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 691331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 19124126 - 19124166
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttc 88  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  19124126 gaacaatttttttacaaaatacgttattcaacccgtgcttc 19124166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 21669283 - 21669231
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||||   ||||||||||||||||||||    
T  21669283 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 21669231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 39278228 - 39278280
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||||   ||||||||||||||||||||    
T  39278228 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 39278280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 48527462 - 48527408
Alignment:
Q  57 ttttacaagatacgttattcaacccgtgc---ttcgcacgggtttgtaactagtt 108  Q
    ||||| || ||||||||||||||||||||   |||||||||||||||||||||||    
T  48527462 ttttaaaaaatacgttattcaacccgtgcgaattcgcacgggtttgtaactagtt 48527408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 24682319 - 24682276
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  24682319 atacgttattcaacccgtgcaaagcacgggtttgtaactagtta 24682276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 9151409 - 9151458
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaacta 105  Q
    |||||| || ||||||||||||||||||||   |||||||||||||||||    
T  9151409 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaacta 9151458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 27733008 - 27732951
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||| | || ||||||||||||||| ||||   |||||||||||||||||||||    
T  27733008 aaatttttaaaaaaatacgttattcaaccagtgcgaagcacgggtttgtaactagtta 27732951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 28565489 - 28565429
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  28565489 gaacaatttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 28565429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 28631793 - 28631853
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  28631793 gaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 28631853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 18815127 - 18815173
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagttaata 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  18815127 atacgttattaaacccgtgcttcgcacgggtttgtaactagttaata 18815173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 3929800 - 3929747
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| |||||||||||||||||||||||   ||||||||||||||||||||    
T  3929800 ttttttataagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 3929747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 29693370 - 29693430
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||| || |||||| |||||||||||||   ||||||||||||||||||||    
T  29693370 gaacaaattttttaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagtt 29693430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 15317628 - 15317667
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgctt 87  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  15317628 gaacaatttttttacaagatacgttattcaacccgtgctt 15317667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 13662171 - 13662121
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaacta 105  Q
    |||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  13662171 ttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaacta 13662121  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 17672387 - 17672429
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||| ||||| ||||||||||||||||||||||||||||||||    
T  17672387 atacattattgaacccgtgcttcgcacgggtttgtaactagtt 17672429  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 20767546 - 20767600
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagttaa 110  Q
    |||||| |||||||||||||||| ||||||   ||||||||||||||||||||||    
T  20767546 tttttataagatacgttattcaagccgtgcgaagcacgggtttgtaactagttaa 20767600  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 26429175 - 26429124
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||||||| |||||||||||||||||  ||||| ||||||||||||||    
T  26429175 ttttttacaagatatgttattcaacccgtgct--gcacgagtttgtaactagtt 26429124  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 47137845 - 47137902
Alignment:
Q  52 aaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||| | ||| |||||||||||||||||||   |||||||||||||||||||||    
T  47137845 aaatttttaaaaagttacgttattcaacccgtgcgaagcacgggtttgtaactagtta 47137902  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 1828438 - 1828479
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  1828438 atacgttattcaacccgtg--tcgcacgggtttgtaactagtta 1828479  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 4893958 - 4894010
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||||   ||||||||||||||||||||    
T  4893958 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 4894010  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 16302147 - 16302187
Alignment:
Q  66 atacgttattcaacccgtgc-ttcgcacgggtttgtaacta 105  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  16302147 atacgttattcaacccgtgctttcgcacgggtttgtaacta 16302187  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 1375982 - 1376024
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  1375982 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 1376024  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 10763588 - 10763630
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  10763588 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 10763630  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 19320462 - 19320420
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  19320462 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 19320420  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 22194509 - 22194467
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  22194509 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 22194467  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 24289242 - 24289200
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  24289242 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 24289200  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 28573160 - 28573202
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  28573160 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 28573202  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 29840731 - 29840689
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  29840731 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 29840689  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 33074273 - 33074231
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  33074273 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 33074231  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 38896815 - 38896857
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  38896815 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 38896857  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 42682592 - 42682634
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  42682592 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 42682634  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 23909768 - 23909715
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||||||| ||| ||| ||||||||||||   ||||||||||||||||||||    
T  23909768 ttttttacaaaatatgttcttcaacccgtgcgaagcacgggtttgtaactagtt 23909715  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 29184529 - 29184477
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||| ||||||   ||||||||||||||||||||    
T  29184529 tttttaaaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagtt 29184477  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 44407294 - 44407338
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagttaa 110  Q
    |||||||||| |||||||||   ||||||||||||||||||||||    
T  44407294 atacgttattgaacccgtgcgaagcacgggtttgtaactagttaa 44407338  T

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Target: scaffold0051 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 61695 - 61754
Alignment:
Q  48 gaacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagt 107  Q
    ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||    
T  61695 gaacaaattttttacaagatacgatattcaacccgtgcgaagcacgggtttgtaactagt 61754  T

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Target: scaffold0385 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 4226 - 4187
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaacta 105  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  4226 atacgttatacaacccgtgcttcgcacgggtttgtaacta 4187  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 151933 - 151883
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaacta 105  Q
    |||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  151933 ttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaacta 151883  T

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Target: scaffold1891 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold1891
Description:

Target: scaffold1891; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 1260 - 1207
Alignment:
Q  55 ttttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  1260 ttttttataaaatacgttattaaacccgtgcaacgcacgggtttgtaactagtt 1207  T

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Target: scaffold1891; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 330 - 373
Alignment:
Q  66 atacgttattcaacccgtgctt-cgcacgggtttgtaactagtt 108  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  330 atacgttattgaacccgtgctttcgcacgggtttgtaactagtt 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 17452 - 17399
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||| || ||||||||||||||||||||   |||||||||||||||||||||    
T  17452 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtta 17399  T

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Target: scaffold0069 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 14638 - 14690
Alignment:
Q  56 tttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    |||||| || ||||||||||||||||||||   ||||||||||||||||||||    
T  14638 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 14690  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 5400 - 5442
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtta 109  Q
    |||||||||| |||||||| ||||||||||||||||||||||||    
T  5400 atacgttattgaacccgtg-ttcgcacgggtttgtaactagtta 5442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 11232 - 11274
Alignment:
Q  66 atacgttattcaacccgtgcttcgcacgggtttgtaactagtt 108  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  11232 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 11274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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