View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_32 (Length: 396)

Name: NF0750_low_32
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_32
NF0750_low_32
[»] chr5 (2 HSPs)
chr5 (108-384)||(39012594-39012866)
chr5 (108-301)||(38922725-38922910)
[»] chr4 (2 HSPs)
chr4 (299-378)||(34208269-34208347)
chr4 (299-335)||(44385034-44385070)
[»] chr8 (2 HSPs)
chr8 (293-379)||(45419433-45419518)
chr8 (293-330)||(29700474-29700511)
[»] chr3 (1 HSPs)
chr3 (293-379)||(30797821-30797906)
[»] chr1 (1 HSPs)
chr1 (300-354)||(27520231-27520284)
[»] chr6 (1 HSPs)
chr6 (297-330)||(32400335-32400368)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 108 - 384
Target Start/End: Original strand, 39012594 - 39012866
Alignment:
Q  108 tcaattaatgtgtgttactacaactagtacttctgtataaattttattgacgtaaaaatgtcatctttccttatttgtaagcaaaatgccgagcatcact 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39012594 tcaattaatgtgtgttactacaactagtacttctgtataaattttattgacgtaaaaatgtcatctttccttatttgtaagcaaaatgccgagcatcact 39012693  T
Q  208 tgaaagtcacacaatatacccacatttactaagtctcaagttcgaacacgtgtaaaaaatttcaacttaacaatatttaattgacaatttagtttatgat 307  Q
    ||||||||||||   |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39012694 tgaaagtcacac---atacccacatttacgaagtcttaagttcgaacatgtgtaaaaaatttcaacttaacaatatttaattgacaatttagtttatgat 39012790  T
Q  308 agaacattatggtgcaatttgattcatctcactcgacctcacttaataaaataagggttggttgttgttgtaatatt 384  Q
    |||||| |||||||||||||||||||| |  | |||||||||||| | |||||||||||||||||||||||||||||    
T  39012791 agaacactatggtgcaatttgattcatattgc-cgacctcacttagtgaaataagggttggttgttgttgtaatatt 39012866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 108 - 301
Target Start/End: Complemental strand, 38922910 - 38922725
Alignment:
Q  108 tcaattaatgtgtgttactacaactagtacttctgtataaattttattgacgtaaaaatgtcatctttccttatttgtaagcaaaatgccgagcatcact 207  Q
    |||||||||||||||||||||||||||| |||   |||||||||||||||||||||||||   ||||| |||| |||||||||||||| ||||||| |||    
T  38922910 tcaattaatgtgtgttactacaactagtccttgaatataaattttattgacgtaaaaatg---tcttttcttagttgtaagcaaaatgtcgagcattact 38922814  T
Q  208 tgaaagtcacacaatatacccacatttactaagtctcaagttcgaacacgtgtaaaaaatttcaacttaacaatatttaattgacaatttagtt 301  Q
    ||||||||     ||  || || | |||  |||||| |||||  |||  |||||||||| ||||||||||||||||  ||||||||||| ||||    
T  38922813 tgaaagtc-----atgcacacataattatgaagtcttaagtttcaacttgtgtaaaaaaattcaacttaacaatatcgaattgacaattgagtt 38922725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 34208347 - 34208269
Alignment:
Q  299 gtttatgatagaacattatggtgcaatttgattcatctcactcgacctcacttaataaaataagggttggttgttgttgt 378  Q
    ||||||||||||||||||||| |||||||||| ||| | |||||||| | |||| |   |||||| ||||||||||||||    
T  34208347 gtttatgatagaacattatggcgcaatttgatccatgt-actcgaccccccttattgggataaggcttggttgttgttgt 34208269  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 44385034 - 44385070
Alignment:
Q  299 gtttatgatagaacattatggtgcaatttgattcatc 335  Q
    |||||||||||||||||||| || |||||||||||||    
T  44385034 gtttatgatagaacattatgatgtaatttgattcatc 44385070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 379
Target Start/End: Original strand, 45419433 - 45419518
Alignment:
Q  293 aatttagtttatgatagaacattatggtgcaatttgattcatctcactcgacctcacttaataaaataagggttggttgttgttgta 379  Q
    ||||| ||||||||||||||||||||||| |||||||| ||| | |  ||||| |||||| |   |||||| |||||||||||||||    
T  45419433 aatttggtttatgatagaacattatggtgtaatttgatccatgt-agccgaccccacttagtgggataaggcttggttgttgttgta 45419518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 29700474 - 29700511
Alignment:
Q  293 aatttagtttatgatagaacattatggtgcaatttgat 330  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  29700474 aattttgtttatgatagaacattatggtgtaatttgat 29700511  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 30797906 - 30797821
Alignment:
Q  293 aatttagtttatgatagaacattatggtgcaatttgattcatctcactcgacctcacttaataaaataagggttggttgttgttgta 379  Q
    ||||||||||||||||||||||||||  | ||||||||  || | || ||||| |||||| |  ||||||| |||||||||||||||    
T  30797906 aatttagtttatgatagaacattatgacgtaatttgatctatgtaac-cgaccccacttagtggaataaggcttggttgttgttgta 30797821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 27520284 - 27520231
Alignment:
Q  300 tttatgatagaacattatggtgcaatttgattcatctcactcgacctcacttaat 354  Q
    ||||||||||||||||||| || |||||||||||| | | |||||||||||||||    
T  27520284 tttatgatagaacattatgatgtaatttgattcatgt-agtcgacctcacttaat 27520231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 32400335 - 32400368
Alignment:
Q  297 tagtttatgatagaacattatggtgcaatttgat 330  Q
    ||||||||||||||||||| ||||||||||||||    
T  32400335 tagtttatgatagaacattgtggtgcaatttgat 32400368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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