View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_33 (Length: 395)

Name: NF0750_low_33
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_33
NF0750_low_33
[»] chr5 (2 HSPs)
chr5 (107-383)||(39012594-39012866)
chr5 (107-300)||(38922725-38922910)
[»] chr4 (2 HSPs)
chr4 (298-377)||(34208269-34208347)
chr4 (298-334)||(44385034-44385070)
[»] chr8 (2 HSPs)
chr8 (292-378)||(45419433-45419518)
chr8 (292-329)||(29700474-29700511)
[»] chr3 (1 HSPs)
chr3 (292-378)||(30797821-30797906)
[»] chr1 (1 HSPs)
chr1 (299-353)||(27520231-27520284)
[»] chr6 (1 HSPs)
chr6 (296-329)||(32400335-32400368)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 107 - 383
Target Start/End: Original strand, 39012594 - 39012866
Alignment:
Q  107 tcaattaatgtgtgttactacaactagtacttctgtataaattttattgacgtaaaaatgtcatctttccttatttgtaagcaaaatgccgagcatcact 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39012594 tcaattaatgtgtgttactacaactagtacttctgtataaattttattgacgtaaaaatgtcatctttccttatttgtaagcaaaatgccgagcatcact 39012693  T
Q  207 tgaaagtcacacaatatacccacatttactaagtctcaagttcgaacacgtgtaaaaaatttcaacttaacaatatttaattgacaatttagtttatgat 306  Q
    ||||||||||||   |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39012694 tgaaagtcacac---atacccacatttacgaagtcttaagttcgaacatgtgtaaaaaatttcaacttaacaatatttaattgacaatttagtttatgat 39012790  T
Q  307 agaacattatggtgcaatttgattcatctcactcgacctcacttaataaaataagggttggttgttgttgtaatatt 383  Q
    |||||| |||||||||||||||||||| |  | |||||||||||| | |||||||||||||||||||||||||||||    
T  39012791 agaacactatggtgcaatttgattcatattgc-cgacctcacttagtgaaataagggttggttgttgttgtaatatt 39012866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 300
Target Start/End: Complemental strand, 38922910 - 38922725
Alignment:
Q  107 tcaattaatgtgtgttactacaactagtacttctgtataaattttattgacgtaaaaatgtcatctttccttatttgtaagcaaaatgccgagcatcact 206  Q
    |||||||||||||||||||||||||||| |||   |||||||||||||||||||||||||   ||||| |||| |||||||||||||| ||||||| |||    
T  38922910 tcaattaatgtgtgttactacaactagtccttgaatataaattttattgacgtaaaaatg---tcttttcttagttgtaagcaaaatgtcgagcattact 38922814  T
Q  207 tgaaagtcacacaatatacccacatttactaagtctcaagttcgaacacgtgtaaaaaatttcaacttaacaatatttaattgacaatttagtt 300  Q
    ||||||||     ||  || || | |||  |||||| |||||  |||  |||||||||| ||||||||||||||||  ||||||||||| ||||    
T  38922813 tgaaagtc-----atgcacacataattatgaagtcttaagtttcaacttgtgtaaaaaaattcaacttaacaatatcgaattgacaattgagtt 38922725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 34208347 - 34208269
Alignment:
Q  298 gtttatgatagaacattatggtgcaatttgattcatctcactcgacctcacttaataaaataagggttggttgttgttgt 377  Q
    ||||||||||||||||||||| |||||||||| ||| | |||||||| | |||| |   |||||| ||||||||||||||    
T  34208347 gtttatgatagaacattatggcgcaatttgatccatgt-actcgaccccccttattgggataaggcttggttgttgttgt 34208269  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 44385034 - 44385070
Alignment:
Q  298 gtttatgatagaacattatggtgcaatttgattcatc 334  Q
    |||||||||||||||||||| || |||||||||||||    
T  44385034 gtttatgatagaacattatgatgtaatttgattcatc 44385070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 45419433 - 45419518
Alignment:
Q  292 aatttagtttatgatagaacattatggtgcaatttgattcatctcactcgacctcacttaataaaataagggttggttgttgttgta 378  Q
    ||||| ||||||||||||||||||||||| |||||||| ||| | |  ||||| |||||| |   |||||| |||||||||||||||    
T  45419433 aatttggtttatgatagaacattatggtgtaatttgatccatgt-agccgaccccacttagtgggataaggcttggttgttgttgta 45419518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 29700474 - 29700511
Alignment:
Q  292 aatttagtttatgatagaacattatggtgcaatttgat 329  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  29700474 aattttgtttatgatagaacattatggtgtaatttgat 29700511  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 30797906 - 30797821
Alignment:
Q  292 aatttagtttatgatagaacattatggtgcaatttgattcatctcactcgacctcacttaataaaataagggttggttgttgttgta 378  Q
    ||||||||||||||||||||||||||  | ||||||||  || | || ||||| |||||| |  ||||||| |||||||||||||||    
T  30797906 aatttagtttatgatagaacattatgacgtaatttgatctatgtaac-cgaccccacttagtggaataaggcttggttgttgttgta 30797821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 27520284 - 27520231
Alignment:
Q  299 tttatgatagaacattatggtgcaatttgattcatctcactcgacctcacttaat 353  Q
    ||||||||||||||||||| || |||||||||||| | | |||||||||||||||    
T  27520284 tttatgatagaacattatgatgtaatttgattcatgt-agtcgacctcacttaat 27520231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 32400335 - 32400368
Alignment:
Q  296 tagtttatgatagaacattatggtgcaatttgat 329  Q
    ||||||||||||||||||| ||||||||||||||    
T  32400335 tagtttatgatagaacattgtggtgcaatttgat 32400368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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