View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_34 (Length: 395)
Name: NF0750_low_34
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 41 - 385
Target Start/End: Complemental strand, 31120756 - 31120412
Alignment:
| Q |
41 |
atcactaccggtattcttgttagcgctatttccacctttgtttgagtaatttcctgaaagaatccaaactgaaactttactatataaatctagacattaa |
140 |
Q |
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| T |
31120756 |
atcactaccggtattcttgttagcgctatttccacctttgtttgagtaatttcctgaaagaatccaaattgaaactttactatataaatctagacattaa |
31120657 |
T |
|
| Q |
141 |
aaagtgatatgtttcctttatgtagacaagttttgaggttggaattaactcaagatggcatatatattttgtactctccatgtcaaactagtatatgttt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31120656 |
aaagtgatatgtttcctttatgtagacaagttttgaggttggaattaactcaagatggcatatatattttgtactctccatgtcaaactagtatatgttt |
31120557 |
T |
|
| Q |
241 |
aacgaacctggtgctccataagtattggatcccatgtcgtgccttgttgaatctctccatccaccctaaagttccaagatagcgacagtatatgattagt |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
31120556 |
aacgaacctggtgctccataagtattggatcccatgtcgtgccttgttgaatctctccatccaccctaaagttccaagacagtgacagtatatgattagt |
31120457 |
T |
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| Q |
341 |
aacatgttaactagctataagagtaatgatactcatacacctatg |
385 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31120456 |
aacatgtcaactagctataagagtaatgatactcatacacctatg |
31120412 |
T |
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