View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_35 (Length: 382)
Name: NF0750_low_35
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 99 - 328
Target Start/End: Complemental strand, 6353127 - 6352898
Alignment:
| Q |
99 |
attttatcaccactaaccacaatcacaaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaattataaaca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| | |||||||||||||| |
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| T |
6353127 |
attttatcaccactaaccacaatcacaaacactactccattagaaaccatcaaatctatttcctcaaacatttcatcaccactcagcacaattataaaca |
6353028 |
T |
|
| Q |
199 |
ctactcctttagaaacattcaacaccatttcctcgcatatttcatcaccactcatcacaatcaaaaacgctaatccgttagaaactatcaaatccatttc |
298 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6353027 |
ctactcctttagaaacattcaacaccatttcctcacatatttcatcaccactcatcacaatcaaaaatgctaatccgttagaaactatcaaatccatttc |
6352928 |
T |
|
| Q |
299 |
ctcaaacattttatcaccactaaccacaat |
328 |
Q |
| |
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||||||||||| ||||||||| |||||||| |
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| T |
6352927 |
ctcaaacatttcatcaccactcaccacaat |
6352898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 124 - 382
Target Start/End: Complemental strand, 6353240 - 6352982
Alignment:
| Q |
124 |
caaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaattataaacactactcctttagaaacattcaacac |
223 |
Q |
| |
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||||||||| ||| ||||| |||| ||| |||||||||||||||||| | |||||| |||||||| | |||||||| ||| |||||||| |||| | |
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| T |
6353240 |
caaacactaatcctttagagactaacaacaccatttcctcaaacatttcaaaaccactcaccacaatcacaaacactaatccattagaaactatcaaatc |
6353141 |
T |
|
| Q |
224 |
catttcctcgcatatttcatcaccactcatcacaatcaaaaacgctaatccgttagaaactatcaaatccatttcctcaaacattttatcaccactaacc |
323 |
Q |
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||||||||| | |||| ||||||||| | |||||||| |||| ||| ||| |||||||| |||||||| |||||||||||||||| ||||||||| | | |
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| T |
6353140 |
catttcctctaacattttatcaccactaaccacaatcacaaacactactccattagaaaccatcaaatctatttcctcaaacatttcatcaccactcagc |
6353041 |
T |
|
| Q |
324 |
acaattataaacactactcctttagaaacattcaacaccatttcctcgcatatttcatc |
382 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6353040 |
acaattataaacactactcctttagaaacattcaacaccatttcctcacatatttcatc |
6352982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 107 - 370
Target Start/End: Complemental strand, 6353188 - 6352925
Alignment:
| Q |
107 |
accactaaccacaatcacaaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaattataaacactactcct |
206 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
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| T |
6353188 |
accactcaccacaatcacaaacactaatccattagaaactatcaaatccatttcctctaacattttatcaccactaaccacaatcacaaacactactcca |
6353089 |
T |
|
| Q |
207 |
ttagaaacattcaacaccatttcctcgcatatttcatcaccactcatcacaatcaaaaacgctaatccgttagaaactatcaaatccatttcctcaaaca |
306 |
Q |
| |
|
|||||||| |||| | |||||||| | |||||||||||||||| |||||| | |||| ||| ||| |||||||| |||| ||||||||||| | | |
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|
| T |
6353088 |
ttagaaaccatcaaatctatttcctcaaacatttcatcaccactcagcacaattataaacactactcctttagaaacattcaacaccatttcctcacata |
6352989 |
T |
|
| Q |
307 |
ttttatcaccactaaccacaattataaacactactcctttagaaacattcaacaccatttcctc |
370 |
Q |
| |
|
||| ||||||||| | |||||| | ||| ||| ||| |||||||| |||| |||||||||| |
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|
| T |
6352988 |
tttcatcaccactcatcacaatcaaaaatgctaatccgttagaaactatcaaatccatttcctc |
6352925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 266
Target Start/End: Complemental strand, 6353058 - 6352891
Alignment:
| Q |
99 |
attttatcaccactaaccacaatcacaaacactactccattagaaactatcaaatccatttcctcaaacattttatcaccactaaccacaattataaaca |
198 |
Q |
| |
|
|||| ||||||||| | |||||| | |||||||||||| |||||||| |||| ||||||||||| | |||| ||||||||| | |||||| | ||| |
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| T |
6353058 |
atttcatcaccactcagcacaattataaacactactcctttagaaacattcaacaccatttcctcacatatttcatcaccactcatcacaatcaaaaatg |
6352959 |
T |
|
| Q |
199 |
ctactcctttagaaacattcaacaccatttcctcgcatatttcatcaccactcatcacaatcaaaaac |
266 |
Q |
| |
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||| ||| |||||||| |||| |||||||||| | |||||||||||||||| |||||||| |||| |
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| T |
6352958 |
ctaatccgttagaaactatcaaatccatttcctcaaacatttcatcaccactcaccacaatcacaaac |
6352891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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