View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_37 (Length: 366)
Name: NF0750_low_37
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 32 - 355
Target Start/End: Complemental strand, 17109218 - 17108895
Alignment:
| Q |
32 |
acttcagagagggtgaacaataattaaattccaattctccgcaattgattagacgtaattcactgattttcggagaaggtggaacagaatcaacaagttg |
131 |
Q |
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| T |
17109218 |
acttcagagagggtgaacaataattaaattccaattctccgcaattgattagacgtaattcactgattttcggagaagatggaacagaatcaacaagttg |
17109119 |
T |
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| Q |
132 |
tttacagtcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgt |
231 |
Q |
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| T |
17109118 |
tttacagtcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgt |
17109019 |
T |
|
| Q |
232 |
ggaaatacaccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatg |
331 |
Q |
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| T |
17109018 |
ggaaatacaccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatg |
17108919 |
T |
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| Q |
332 |
gagaagagcagctcacatccctat |
355 |
Q |
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| T |
17108918 |
gagaagagcagctcacatccctat |
17108895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 355
Target Start/End: Complemental strand, 16977867 - 16977566
Alignment:
| Q |
51 |
ataattaaattccaattctccgcaattgattagacgtaattcactgattttcggagaaggtggaacagaatcaacaagttgtttacagtcacagattttc |
150 |
Q |
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| T |
16977867 |
ataattaaatttcaattttccacaattggtgagacgtagttcactgattgatggagagaatggaacagaagtcacgagctgtttgcaatcacaaattttc |
16977768 |
T |
|
| Q |
151 |
aaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacct |
250 |
Q |
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| T |
16977767 |
agactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaacaacc---cccc |
16977671 |
T |
|
| Q |
251 |
caacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatc |
350 |
Q |
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||||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| ||| |||| |
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| T |
16977670 |
caacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtagagcttctcccatc |
16977571 |
T |
|
| Q |
351 |
cctat |
355 |
Q |
| |
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||||| |
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| T |
16977570 |
cctat |
16977566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 330
Target Start/End: Complemental strand, 17048077 - 17047801
Alignment:
| Q |
51 |
ataattaaattccaattctccgcaattgattagacgtaattcactgattttcggagaaggtggaacagaatcaacaagttgtttacagtcacagattttc |
150 |
Q |
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||||||||||| ||||| ||| |||||| | ||||||| |||||||||| ||||| |||||||||| || || ||||| || ||||| |||||| |
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| T |
17048077 |
ataattaaatttcaattttccacaattggtgagacgtagttcactgattgatggagagaatggaacagaagtcacgagctgtttgcaatcacaaattttc |
17047978 |
T |
|
| Q |
151 |
aaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacct |
250 |
Q |
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| | |||||||||||||||||| || ||| | |||| |||||||| |||||||||||| |||| |||||||| ||| |||||||| ||| || | || |
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| T |
17047977 |
agactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaacaacccc---ct |
17047881 |
T |
|
| Q |
251 |
caacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagat |
330 |
Q |
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|||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| |
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| T |
17047880 |
taacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagat |
17047801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 355
Target Start/End: Complemental strand, 17029739 - 17029438
Alignment:
| Q |
51 |
ataattaaattccaattctccgcaattgattagacgtaattcactgattttcggagaaggtggaacagaatcaacaagttgtttacagtcacagattttc |
150 |
Q |
| |
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||||||||||| ||||| ||| |||||| | ||||||| |||||||||| ||||| |||||||||| || || ||||| || ||||| |||||| |
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| T |
17029739 |
ataattaaatttcaattttccacaattggtgagacgtagttcactgattgatggagagaatggaacagaagtcacgagctgtttgcaatcacaaattttc |
17029640 |
T |
|
| Q |
151 |
aaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacct |
250 |
Q |
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| | |||||||||||||||||| || ||| | |||| |||||||| |||||||||||| |||| |||||||| ||| |||||||| ||| || || |
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| T |
17029639 |
agactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaacaacc---cccc |
17029543 |
T |
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| Q |
251 |
caacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatc |
350 |
Q |
| |
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|||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| ||| |||| |
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| T |
17029542 |
naacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtagagcttctcccatc |
17029443 |
T |
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| Q |
351 |
cctat |
355 |
Q |
| |
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||||| |
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| T |
17029442 |
cctat |
17029438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 14298044 - 14297979
Alignment:
| Q |
263 |
attcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacag |
328 |
Q |
| |
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||||||| |||| |||| ||| |||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
14298044 |
attcccattcttcccattcatacatatcctcaaattgtaaagtttccaaggatggaaatggaacag |
14297979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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