View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_39 (Length: 358)

Name: NF0750_low_39
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_39
NF0750_low_39
[»] chr1 (2 HSPs)
chr1 (135-233)||(30365343-30365441)
chr1 (79-135)||(30365257-30365313)
[»] chr6 (5 HSPs)
chr6 (195-286)||(20997855-20997946)
chr6 (135-286)||(31385894-31386044)
chr6 (205-286)||(31382633-31382715)
chr6 (135-187)||(31382578-31382630)
chr6 (147-187)||(31967285-31967324)
[»] chr8 (1 HSPs)
chr8 (193-243)||(19944425-19944476)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 30365343 - 30365441
Alignment:
Q  135 agtatagaaccaatttcaaatttggttttgaatttggtgttgtttgattaaacagccgagaatgtaaatcctcatatagatcatgctatttgaaataag 233  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30365343 agtatagaaccaattacaaatttggttttgaatttggtgttgtttgattaaacagccgagaatgtaaatcctcatatagatcatgctatttgaaataag 30365441  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 30365257 - 30365313
Alignment:
Q  79 atactaattagaagcaaaatagtatatgttatgactacatcagtgaggttggctcaa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30365257 atactaattagaagcaaaatagtatatgttatgactacatcagtgaggttggttcaa 30365313  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 20997855 - 20997946
Alignment:
Q  195 aatgtaaatcctcatatagatcatgctatttgaaataagaaaaataaacaaatgtaagatgttaagagataaatttttagggatgaccaatt 286  Q
    ||||||||| |||||||||| |||||||||||||| | ||||||||||| |||||||| ||||||||||| || ||||||||||||||||||    
T  20997855 aatgtaaatgctcatatagaccatgctatttgaaaaaggaaaaataaactaatgtaaggtgttaagagatgaacttttagggatgaccaatt 20997946  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 286
Target Start/End: Original strand, 31385894 - 31386044
Alignment:
Q  135 agtatagaaccaatttcaaatttggttttgaatttggtgttgtttgattaaacagccgagaatgtaaatcctcatatagatcatgctatttgaaa-taag 233  Q
    |||||||||||  |  ||||||||||| ||||||||||||||||||||||||| |  |||| | | ||| |||||| |||||||||||| | ||| ||||    
T  31385894 agtatagaaccggtcacaaatttggttatgaatttggtgttgtttgattaaactgttgagactattaatgctcata-agatcatgctatctaaaagtaag 31385992  T
Q  234 aaaaataaacaaatgtaagatgttaagagataaatttttagggatgaccaatt 286  Q
     ||| ||||  ||||||||| ||||||||||||| ||| |||||| |||||||    
T  31385993 -aaagtaaaataatgtaagaagttaagagataaactttcagggataaccaatt 31386044  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 31382633 - 31382715
Alignment:
Q  205 ctcatatagatcatgctatttgaaa-taagaaaaataaacaaatgtaagatgttaagagataaatttttagggatgaccaatt 286  Q
    ||||||||||||||| ||||||||| ||||||||||||||  |||| |  |||||||||| ||| ||| ||||||||||||||    
T  31382633 ctcatatagatcatggtatttgaaaataagaaaaataaactgatgtgaagtgttaagagaaaaactttcagggatgaccaatt 31382715  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 31382578 - 31382630
Alignment:
Q  135 agtatagaaccaatttcaaatttggttttgaatttggtgttgtttgattaaac 187  Q
    |||||||||| | || |||||||| |||||||||||||||||||| |||||||    
T  31382578 agtatagaactagttgcaaatttgcttttgaatttggtgttgtttaattaaac 31382630  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 31967285 - 31967324
Alignment:
Q  147 atttcaaatttggttttgaatttggtgttgtttgattaaac 187  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  31967285 atttcaaatt-ggatttgaatttggtgttgtttgattaaac 31967324  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 19944476 - 19944425
Alignment:
Q  193 agaatgtaaatcctcatatagatcatgctatttg-aaataagaaaaataaac 243  Q
    ||||||||||| ||||||| |||||||||||||| |||||| ||||||||||    
T  19944476 agaatgtaaatactcatatcgatcatgctatttgaaaataataaaaataaac 19944425  T

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