View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0750_low_45 (Length: 342)
Name: NF0750_low_45
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_45 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 30 - 331
Target Start/End: Original strand, 41789307 - 41789609
Alignment:
| Q |
30 |
ttggagccattgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgtgggtgatctat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41789307 |
ttggagccattgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgtgggtgatctat |
41789406 |
T |
|
| Q |
130 |
atggattttatt-gcgagtttttatactcgaactttgctttgtttgaatctctctttttggatgttccgtatatgtatgacattgttgattagtaaatct |
228 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41789407 |
atggattttatttgcgagtttttatactcgaactttgctttgtctaaatctctctttttggatgttccgtatatgtatgacattgttgattagtaaatct |
41789506 |
T |
|
| Q |
229 |
ttttcacttgtctttgttcgtttgaagaagaatttgttattaatacttttgtctagtaaggactatatgtgattatgttcccttaattctttaaaatttt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41789507 |
ttttcacttgtctttgttcgtttgaagaagaatttgttattaatacttttgtctagtaaggactatatgtgattatgttcccttaattctttaaaatttt |
41789606 |
T |
|
| Q |
329 |
cat |
331 |
Q |
| |
|
||| |
|
|
| T |
41789607 |
cat |
41789609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 32737597 - 32737679
Alignment:
| Q |
35 |
gccattgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| |||||| ||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
32737597 |
gccattgttaatgttcatgagagtatgtgcgg-ttggtttggttgttttgtgcaattgtttgggtgttgttggtagctctttgt |
32737679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 5824216 - 5823973
Alignment:
| Q |
35 |
gccattgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgt--gggtgatctatat- |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
5824216 |
gccattgttaatgttcatgagagtttgtgcggtttggtttggttgttttgcgtaattgtttgggtgttgttggtagctctttgtgggggtgatcaatata |
5824117 |
T |
|
| Q |
132 |
ggattttattgcgagtttttatactcgaactttgctttgtttgaatctctctttttggatgttccgtatatgtatgacattgttgattagtaaatctt-t |
230 |
Q |
| |
|
| |||| ||||||| |||| ||| |||||||||||||| || |||||||||||| | |||||| ||| || |||| ||| || ||||||||| | |
|
|
| T |
5824116 |
gcttttttttgcgaggttttttacatgaactttgctttgtctgtatctctctttttaggtgttccacctatatacgacaccattgctttgtaaatcttgt |
5824017 |
T |
|
| Q |
231 |
ttcacttgtctttgttcgt-ttgaagaagaatttgttattaata |
273 |
Q |
| |
|
|||||||||||||| |||| || || ||| |||||||||||||| |
|
|
| T |
5824016 |
ttcacttgtctttgctcgtcttcaacaaggatttgttattaata |
5823973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 24374858 - 24374777
Alignment:
| Q |
38 |
attgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgtggg |
121 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| ||||| ||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
24374858 |
attgttaatgttcatgaaagtttgtttggtttgatttggt-gttttgtgtaattgttt-ggtgttgttggtagatctttgtggg |
24374777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 273
Target Start/End: Original strand, 11157588 - 11157680
Alignment:
| Q |
183 |
tttttggatgttccgtatatgtatgacattgttgattagtaaatctt-tttcacttgtctttgttcgt-ttgaagaagaatttgttattaata |
273 |
Q |
| |
|
||||||||||||||| ||| || ||||| |||| || ||||||||| |||||||||||||||||| | ||||| ||| |||| ||||||||| |
|
|
| T |
11157588 |
tttttggatgttccgcctatatacgacatcgttgctttgtaaatcttatttcacttgtctttgttcctcttgaacaaggatttcttattaata |
11157680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 29176958 - 29176895
Alignment:
| Q |
38 |
attgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgt |
101 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| |||||| ||||| ||| |||||||||||| |
|
|
| T |
29176958 |
attgttaatcttcacgagagtttgtgcgatttggtttggttgttttgtgtaattgtttgggtgt |
29176895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5766 times since January 2019
Visitors: 4859