View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_53 (Length: 316)

Name: NF0750_low_53
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_53
NF0750_low_53
[»] chr4 (1 HSPs)
chr4 (68-293)||(34687624-34687853)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 34687853 - 34687624
Alignment:
68 aaaatgatttgggaacttaccgtactaaatagcattt----ctccttaaacatatatttttcaaatgattaattgatatgtatgtgatctatgtgtgtcc 163  Q
    ||||||||||||||||||||| ||||||||| ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34687853 aaaatgatttgggaacttaccatactaaataacattaattactccttaaacatatatttttcaaatgattaattgatatgtatgtgatctatgtgtgtcc 34687754  T
164 aaatcatttatatttataaattgtgtctaagcaattgttgttcactcataatatatattagtaaaatactccatggtagataagaaaaaagttgcatacc 263  Q
    ||||||||||||||  ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34687753 aaatcatttatattggtaattagtgtctaagtaattgttgttcactcataatatatattagtaaaatactccatggtagataagaaaaaagttgcatacc 34687654  T
264 agataataatcagcgccatggtcgagtgag 293  Q
    |||||||||||||| ||||||| |||||||    
34687653 agataataatcagccccatggtagagtgag 34687624  T

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