View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_55 (Length: 315)
Name: NF0750_low_55
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 33556281 - 33556456
Alignment:
| Q |
76 |
catcaacattacaatcacaataacaattttcagtaaggactctctccaacataattcccaggtggataatagaaacaaatactcaaactagtatcttcct |
175 |
Q |
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| T |
33556281 |
catcaacattacaatcacaacaacaattttcagtaaggactctctccaacataattcccaggtggataatagaaacaaatactcaaactagtatcttcct |
33556380 |
T |
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| Q |
176 |
taccacaagtagtttgagcacacccaagttcaacactcttcctccaaacaacttgagtataaacaccacacctatg |
251 |
Q |
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| T |
33556381 |
taccacaagtagtttgagcacacccaagttcaacactcttcctccaaacaacttgagtataaacaccacacctatg |
33556456 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 7013427 - 7013373
Alignment:
| Q |
112 |
ggactctctccaacataattcccaggtggataatagaaacaaatactcaaactag |
166 |
Q |
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| T |
7013427 |
ggactctctccaataacattaccaggtggatcatagaaacaaatagtcaaactag |
7013373 |
T |
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