View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_6 (Length: 589)
Name: NF0750_low_6
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 313 - 585
Target Start/End: Original strand, 44695221 - 44695495
Alignment:
| Q |
313 |
ataattaagggttagctttttctctcatttcaatgtgcatcatcatggcaaaatggaaaaatgtaatgttgatatgatggatcgatcagccatgcatgct |
412 |
Q |
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| T |
44695221 |
ataattaagggttagctttttctctcatttcaatgtgcatcatcatggcaaaatggaaaaatgtaatgttgatatgatggatcgatcagccatgcatgct |
44695320 |
T |
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| Q |
413 |
aacttgcaccacttactttactcttatgtattcctttgatatttgaggcaaagtttcaccattcctgccgtacaaaacattaattaat--ttcctcaaag |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44695321 |
aacttgcaccacttactttactcttatgtattcctttgatatttgaggcaaagtttcaccattcctgccgtacaaaacattaattaataattcctcaaag |
44695420 |
T |
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| Q |
511 |
actccaaaaagatttgagatcaatgtatttaaaaggtgaaatcaaaacaaagaaaaagtgtcctctgtgctgctc |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
44695421 |
actccaaaaagatttgagatcaatgtatttaaaaggtgaaatcaaaacaaagaaaaagtgtcctttgtgatgctc |
44695495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 44694985 - 44695063
Alignment:
| Q |
93 |
aataagataataataaatagtaaacatttaaatgttggagatgtttaaatatagagaaataatatttgtacaatcattt |
171 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
44694985 |
aataagataataataaatagtaaatatttaagtgttggagatgtttaaatatagagaaatgatatttgtacaattattt |
44695063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 40670955 - 40670988
Alignment:
| Q |
145 |
agagaaataatatttgtacaatcatttgtgacaa |
178 |
Q |
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| T |
40670955 |
agagaaataatatttgtacaaccatttgtgacaa |
40670988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 12102785 - 12102748
Alignment:
| Q |
141 |
atatagagaaataatatttgtacaatcatttgtgacaa |
178 |
Q |
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|||||||||||| |||||||| |||||||||||||||| |
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| T |
12102785 |
atatagagaaatgatatttgttcaatcatttgtgacaa |
12102748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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