View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_61 (Length: 297)

Name: NF0750_low_61
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_61
NF0750_low_61
[»] chr7 (5 HSPs)
chr7 (63-219)||(9948802-9948958)
chr7 (141-216)||(9942677-9942752)
chr7 (112-219)||(1032145-1032248)
chr7 (184-219)||(28782087-28782122)
chr7 (118-192)||(17193991-17194065)
[»] scaffold0300 (1 HSPs)
scaffold0300 (117-219)||(9503-9605)
[»] chr5 (4 HSPs)
chr5 (117-219)||(22639485-22639587)
chr5 (117-219)||(19021316-19021417)
chr5 (162-219)||(39143292-39143349)
chr5 (117-219)||(6537003-6537105)
[»] chr4 (7 HSPs)
chr4 (117-219)||(36651813-36651915)
chr4 (117-219)||(43499223-43499325)
chr4 (117-219)||(7743498-7743600)
chr4 (117-219)||(42718496-42718599)
chr4 (117-216)||(9896583-9896680)
chr4 (117-219)||(39059795-39059895)
chr4 (117-173)||(37870776-37870832)
[»] chr2 (6 HSPs)
chr2 (117-219)||(12410713-12410815)
chr2 (117-219)||(12422773-12422875)
chr2 (117-219)||(37647891-37647993)
chr2 (117-219)||(6764346-6764448)
chr2 (117-219)||(27271565-27271668)
chr2 (117-178)||(11031704-11031765)
[»] chr1 (4 HSPs)
chr1 (117-219)||(4532159-4532261)
chr1 (117-219)||(51534550-51534652)
chr1 (117-173)||(34549277-34549333)
chr1 (183-219)||(33766348-33766384)
[»] chr8 (6 HSPs)
chr8 (117-219)||(8444332-8444434)
chr8 (117-219)||(24503980-24504082)
chr8 (117-219)||(45540241-45540344)
chr8 (129-192)||(45547846-45547909)
chr8 (113-173)||(13089905-13089965)
chr8 (117-173)||(4034419-4034475)
[»] chr6 (1 HSPs)
chr6 (117-173)||(12912378-12912434)
[»] scaffold0037 (1 HSPs)
scaffold0037 (117-173)||(891-947)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 63 - 219
Target Start/End: Original strand, 9948802 - 9948958
Alignment:
Q  63 atggtggtctgtctatgaagcacggacactttttgaattatgcgtgtcttatttatggtggttgaaccctttactttgcttaggaatatttatgtaacag 162  Q
    ||||||||| ||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  9948802 atggtggtcagtctatgaagcaccgatactttttggattatgcgtgtcttattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacag 9948901  T
Q  163 ggtagccttctattttgttcatgttttggccatttggcactcttgtaattgactctt 219  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9948902 ggtagccttctattttgttcatgttttggccttttggcactcttgtaattgactctt 9948958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 9942752 - 9942677
Alignment:
Q  141 cttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  9942752 cttaggaatatttatgtaacagagtagccttcttttttgttcttgttttggccttttggcactcttgtaattgact 9942677  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 1032145 - 1032248
Alignment:
Q  112 tatttatggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-atttggcactcttgtaa 210  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||     | |||||||||||||||||||  ||||||| ||||||||    
T  1032145 tattcatggtggttgaaccatttaccttgcttaggaatatttatgtaacagggtag-----ttttttgttcatgttttggccgttttggcattcttgtaa 1032239  T
Q  211 ttgactctt 219  Q
    |||||||||    
T  1032240 ttgactctt 1032248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 28782122 - 28782087
Alignment:
Q  184 tgttttggccatttggcactcttgtaattgactctt 219  Q
    |||||||||| |||||||||||||||||||||||||    
T  28782122 tgttttggccttttggcactcttgtaattgactctt 28782087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 17194065 - 17193991
Alignment:
Q  118 tggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggc 192  Q
    ||||||||||| ||||||| ||| || ||||||||| ||||| |||||||| |||| |||||  | |||||||||    
T  17194065 tggtggttgaatcctttaccttgtttgggaatatttttgtaatagggtagctttcttttttgagcttgttttggc 17193991  T

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Target: scaffold0300 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 9503 - 9605
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  9503 atggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagtcttctattttgttcatgttttggccatttggcactcttgtaactgact 9602  T
Q  217 ctt 219  Q
    |||    
T  9603 ctt 9605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 22639485 - 22639587
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  22639485 atggtggttgaaccatttaccttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggctatttggcactcttgtaactgact 22639584  T
Q  217 ctt 219  Q
    |||    
T  22639585 ctt 22639587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 19021316 - 19021417
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||| || |||||||||||||||||||    
T  19021316 atggtggttgaaccctttaccttgcttaggaatatt-atgtaactgggtagcctttttttttgttcatgttttggcctttcggcactcttgtaattgact 19021414  T
Q  217 ctt 219  Q
    |||    
T  19021415 ctt 19021417  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 39143349 - 39143292
Alignment:
Q  162 gggtagccttctattttgttcatgttttggccatttggcactcttgtaattgactctt 219  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39143349 gggtagccttctattttgttcatgttttggccttttggcactcttgtaattgactctt 39143292  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 6537003 - 6537105
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-atttggcactcttgtaattgac 215  Q
    |||||||||||||||||||| ||||||   ||||||||| ||||| ||||||||| | |||||||  ||||||||||  |||| || | |||||||||||    
T  6537003 atggtggttgaaccctttaccttgcttgataatatttatataacatggtagcctt-ttttttgtttctgttttggcctttttgacatttttgtaattgac 6537101  T
Q  216 tctt 219  Q
    ||||    
T  6537102 tctt 6537105  T

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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 36651915 - 36651813
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36651915 atggtggttgaaccctttaccttgcttaggaatatttatgtaacatggtaaccttctattttgttcatgttttggccatttggcactcttgtaactgact 36651816  T
Q  217 ctt 219  Q
    |||    
T  36651815 ctt 36651813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 43499223 - 43499325
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  43499223 atggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagccttcttttttgttcttgttttggccttttggcactcttgtaattgact 43499322  T
Q  217 ctt 219  Q
    |||    
T  43499323 ctt 43499325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 7743498 - 7743600
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||    
T  7743498 atggtggttgaaccctttaccttgtttaggaatatttatgtagcagggtagccttcttttttgttcttgttttggccttttgacactcttgtaattgact 7743597  T
Q  217 ctt 219  Q
    |||    
T  7743598 ctt 7743600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 42718496 - 42718599
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttc-tattttgttcatgttttggccatttggcactcttgtaattgac 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||| |||||||||||| ||||| ||    
T  42718496 atggtggttgaaccctttaccttgcttaggaatatttatgtaacggggtagccttctttttttgttcttgttttggccttttggcactcttataattaac 42718595  T
Q  216 tctt 219  Q
    ||||    
T  42718596 tctt 42718599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 9896680 - 9896583
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggc-catttggcactcttgtaattgac 215  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||   |||||||| |||||||||   ||||||| ||||| |||||||    
T  9896680 atggtggttgaaccctttaccttgcttgggaatatttatgtaacagggtagcctt---ttttgttcctgttttggcagttttggcattcttgcaattgac 9896584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 39059895 - 39059795
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-atttggcactcttgtaattgac 215  Q
    |||||||||||||| ||||| |||| |  ||||||||||||||||| ||||||||   |||||||| ||||||||||  |||| || |||||||||| ||    
T  39059895 atggtggttgaaccatttaccttgcctgcgaatatttatgtaacagagtagcctt---ttttgttcctgttttggccgttttgacattcttgtaattaac 39059799  T
Q  216 tctt 219  Q
    ||||    
T  39059798 tctt 39059795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 37870832 - 37870776
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 173  Q
    |||||||||||| ||||||| ||||||  |||||||| |||||||||| ||| ||||    
T  37870832 atggtggttgaatcctttaccttgcttgagaatatttttgtaacagggcagcattct 37870776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 12410713 - 12410815
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  12410713 atggtggttgaaccctttaccttgcttaggaatatttatgtaacaaggtagccttcttttttgttcttgttttggccttttggcactcttgtaattgact 12410812  T
Q  217 ctt 219  Q
    |||    
T  12410813 ctt 12410815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 12422773 - 12422875
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  12422773 atggtggttgaaccctttaccttgcttaggaatatttatgtaacaaggtagccttcttttttgttcttgttttggccttttggcactcttgtaattgact 12422872  T
Q  217 ctt 219  Q
    |||    
T  12422873 ctt 12422875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 37647891 - 37647993
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  37647891 atggtggttggaccctttaccttgcttaggaatatttatgtaacatggtagccttcttttttgttcatgttttggccttttgacactcttgtaattgact 37647990  T
Q  217 ctt 219  Q
    |||    
T  37647991 ctt 37647993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 6764346 - 6764448
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||    
T  6764346 atggtggttgaaccctttaccttgcttatgaatatttatgtagcagggtagccttattttttgttcttgttttggccttttggcactcttgtaattgact 6764445  T
Q  217 ctt 219  Q
    |||    
T  6764446 ctt 6764448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 27271565 - 27271668
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcca-tttggcactcttgtaattgac 215  Q
    |||||||||||||||||||| |||||| |||||| |||||||||| | ||| ||||| |||| ||| ||||||||||| |||| |||| ||| |||||||    
T  27271565 atggtggttgaaccctttaccttgcttgggaatacttatgtaacaagatagtcttcttttttattcctgttttggccattttgacacttttggaattgac 27271664  T
Q  216 tctt 219  Q
    ||||    
T  27271665 tctt 27271668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 11031704 - 11031765
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 178  Q
    |||||||||||| | ||||| |||||| ||||||||| |||||||||| ||| |||| ||||    
T  11031704 atggtggttgaatcatttaccttgcttgggaatatttttgtaacagggcagcattctttttt 11031765  T

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Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 4532261 - 4532159
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    ||||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4532261 atggtggttgaacccttcaccttgcttaggaatatttatgtaacaaggtatccttctattttgttcatgttttggccatttggtactcttgtaattgact 4532162  T
Q  217 ctt 219  Q
    |||    
T  4532161 ctt 4532159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 51534652 - 51534550
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    |||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  51534652 atggtgattgaaccctttaccttgcttaggaatatttatgtaatagggtagcattctattttgttcatgttttggccttttggcactcttgtaattgact 51534553  T
Q  217 ctt 219  Q
    |||    
T  51534552 ctt 51534550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 34549277 - 34549333
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 173  Q
    |||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  34549277 atggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 34549333  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 33766348 - 33766384
Alignment:
Q  183 atgttttggccatttggcactcttgtaattgactctt 219  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  33766348 atgttttggccttttgacactcttgtaattgactctt 33766384  T

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Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 8444434 - 8444332
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  8444434 atggttgttgaactctttaccttgcttaggaatatttatgtaacaggatagccttctattttgttcatgttttaaccatttggcactcttgtaattgact 8444335  T
Q  217 ctt 219  Q
    |||    
T  8444334 ctt 8444332  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 24503980 - 24504082
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 216  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||    
T  24503980 atggtggctgaaccctttaccttgtttaggaatatttatgtaacagggtagccttcttttttgttcttgttttggccttttggcacacttgtaattgact 24504079  T
Q  217 ctt 219  Q
    |||    
T  24504080 ctt 24504082  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 45540241 - 45540344
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-atttggcactcttgtaattgac 215  Q
    |||||||||||||||||||| |||||| ||||||||||  ||||| |||||| |||| |||||||| | ||||||||  ||| ||| ||||| |||||||    
T  45540241 atggtggttgaaccctttaccttgcttgggaatatttacataacatggtagctttcttttttgttcctattttggccgttttagcattcttgcaattgac 45540340  T
Q  216 tctt 219  Q
    ||||    
T  45540341 tctt 45540344  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 45547846 - 45547909
Alignment:
Q  129 ccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggc 192  Q
    |||||||| |||||| |||||||||| ||||||||||||| |||| |||||||| |||||||||    
T  45547846 ccctttaccttgcttgggaatatttacgtaacagggtagctttcttttttgttcctgttttggc 45547909  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 13089965 - 13089905
Alignment:
Q  113 atttatggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 173  Q
    |||||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  13089965 atttatggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 13089905  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 4034475 - 4034419
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 173  Q
    |||||||||||| | ||||| |||||| ||||||||| |||||||||| ||| ||||    
T  4034475 atggtggttgaatcatttaccttgcttgggaatatttctgtaacagggcagcattct 4034419  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 12912434 - 12912378
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 173  Q
    |||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  12912434 atggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 12912378  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 891 - 947
Alignment:
Q  117 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 173  Q
    |||||||||||| |||| || |||||| ||||||||| |||||||||| ||| ||||    
T  891 atggtggttgaatccttaaccttgcttgggaatatttttgtaacagggcagcattct 947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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