View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_68 (Length: 286)
Name: NF0750_low_68
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 27045589 - 27045309
Alignment:
| Q |
1 |
tcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcattt |
100 |
Q |
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| T |
27045589 |
tcaaaaactcgatcgatcacactccggagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcattt |
27045490 |
T |
|
| Q |
101 |
aggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttagaagggtgcatt |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27045489 |
aggttttgttgatgaaaataatatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttggaagggtgcatt |
27045390 |
T |
|
| Q |
201 |
ttcgcatctcctggtaaacttgatgatgatgatccatcgatgaaaggaggagttaagatatttacatcactctctgctgct |
281 |
Q |
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| T |
27045389 |
ttcgcatctcctggtaaacttgatgatgatgatccatcaatgaaaggaggagttaagatttttacatcactccctgttgct |
27045309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 265
Target Start/End: Complemental strand, 27098258 - 27098062
Alignment:
| Q |
66 |
ggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcac |
165 |
Q |
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| T |
27098258 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggaacgaagcagtgaatttagtaccagcac |
27098162 |
T |
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| Q |
166 |
catgcaacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttgatgatgatgatccatcgatgaaaggaggagttaagatatttac |
265 |
Q |
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| T |
27098161 |
catgcaacatgtttgcgtcaattgaaattagcatttttacatctcctaataaatttgacaatgatgatccatcaatgaaaggaggggttaagatttttac |
27098062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 265
Target Start/End: Complemental strand, 27105258 - 27105061
Alignment:
| Q |
65 |
cggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagca |
164 |
Q |
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|||||| |||||| ||||||| |||||||| |||||||||||| |||||| |||| |||||||||| ||| ||||| |||||||||| ||||||||| |
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| T |
27105258 |
cggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggcatgaagcagtgaatttagtaccagca |
27105162 |
T |
|
| Q |
165 |
ccatgcaacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttgatgatgatgatccatcgatgaaaggaggagttaagatattta |
264 |
Q |
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| T |
27105161 |
ccatgcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttgacaatgatgatccatctatgaaaggagggattaagattttta |
27105062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 272
Target Start/End: Complemental strand, 27062411 - 27062263
Alignment:
| Q |
124 |
tagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttga |
223 |
Q |
| |
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||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||| |||| | | || | ||||||||| |||| || ||||||||| |
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| T |
27062411 |
tagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgccaccgtcgatgcatgcattttctcatcagctaataaacttga |
27062312 |
T |
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| Q |
224 |
tgatgatgatccatcgatgaaaggaggagttaagatatttacatcactc |
272 |
Q |
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|||| |||||||||| ||| | |||||||||| ||||||||| |||||| |
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| T |
27062311 |
tgatcatgatccatcaatggatggaggagttaggatatttacttcactc |
27062263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 272
Target Start/End: Complemental strand, 27069480 - 27069330
Alignment:
| Q |
122 |
tatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaactt |
221 |
Q |
| |
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||||||||||||||| |||||| |||||||| ||||||||||| ||||| ||| |||| | | || | |||||||||| | |||||| ||||||| |
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| T |
27069480 |
tatagattttggaggctatgaagttgtgaatttagtaccagcaccgtgcaagatgcttgctaccgttgatgcgtgcattttctcgtctcctaataaactt |
27069381 |
T |
|
| Q |
222 |
gatgatgatgatccatcgatgaaaggaggagttaagatatttacatcactc |
272 |
Q |
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|||||| |||||||||| ||| | |||||||||| ||| || ||||||||| |
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| T |
27069380 |
gatgatcatgatccatcaatggatggaggagttaggattttcacatcactc |
27069330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 27041053 - 27040970
Alignment:
| Q |
198 |
attttcgcatctcctggtaaacttgatgatgatgatccatcgatgaaaggaggagttaagatatttacatcactctctgctgct |
281 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||| ||| ||| |||||||||||| |||||||||||||||| ||| |||| |
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| T |
27041053 |
attttctcatctcctaataaacttgatgatcatgatctatcaatggaaggaggagttaggatatttacatcactccctgttgct |
27040970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 27079693 - 27079619
Alignment:
| Q |
198 |
attttcgcatctcctggtaaacttgatgatgatgatccatcgatgaaaggaggagttaagatatttacatcactc |
272 |
Q |
| |
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|||||| |||||||| ||||||||||||| |||||| || ||| |||||||||||| |||||||||||||||| |
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| T |
27079693 |
attttctcatctcctaataaacttgatgatcatgatctgtcaatggaaggaggagttaggatatttacatcactc |
27079619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 27085490 - 27085416
Alignment:
| Q |
198 |
attttcgcatctcctggtaaacttgatgatgatgatccatcgatgaaaggaggagttaagatatttacatcactc |
272 |
Q |
| |
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|||||| |||||||| ||||||||||||| |||||| || ||| |||||||||||| |||||||||||||||| |
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| T |
27085490 |
attttctcatctcctaataaacttgatgatcatgatctgtcaatggaaggaggagttaggatatttacatcactc |
27085416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 19414124 - 19414086
Alignment:
| Q |
214 |
gtaaacttgatgatgatgatccatcgatgaaaggaggag |
252 |
Q |
| |
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|
| T |
19414124 |
gtaaacttgatgatcaagatccatcgatgaaaggaggag |
19414086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 19414212 - 19414159
Alignment:
| Q |
126 |
gattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgttt |
179 |
Q |
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||||||||||| | |||| |||| ||||||||| ||||||||||||||||||| |
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| T |
19414212 |
gattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgttt |
19414159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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