View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0750_low_69 (Length: 281)
Name: NF0750_low_69
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_69 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] scaffold0166 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 77 - 281
Target Start/End: Original strand, 32252099 - 32252303
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatattatatatgtgaataaataaatgcggtgagaaacaatgtttatattataatggtgaaga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32252099 |
aggaatcctataattgtgacaaagagtgatgacaattgatattatatatgtgaataaataaatgcggtgagaaacaatgtttatattataatgatgaaga |
32252198 |
T |
|
| Q |
177 |
gagtaatgagggttaaattatgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggagagagat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32252199 |
gagtaatgagggttaaattatgacgatgaggacgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggagagagat |
32252298 |
T |
|
| Q |
277 |
gatgt |
281 |
Q |
| |
|
||||| |
|
|
| T |
32252299 |
gatgt |
32252303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 23656442 - 23656524
Alignment:
| Q |
46 |
tgatatgaacgattaatacagattaatgctaaggaatcctataattgtgacaaagagtgatgacaattgatattatatatgtgaa |
130 |
Q |
| |
|
|||||| |||| || ||| ||| ||||| | |||||||| ||||| ||||| |||||||||||| ||||||||||||||| |||| |
|
|
| T |
23656442 |
tgatataaacggttgatagagagtaatgatgaggaatcc-ataat-gtgacgaagagtgatgacgattgatattatatatatgaa |
23656524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 281
Target Start/End: Complemental strand, 24615528 - 24615319
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatggtgaa |
174 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||| || | ||||||||||||||||||||| | ||| |
|
|
| T |
24615528 |
aggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacgatgag |
24615429 |
T |
|
| Q |
175 |
gagagtaatgagggttaaatta---tgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggaga |
271 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |||| |||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
24615428 |
gagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatgataatgaaaataactatactattatgatggagaga |
24615329 |
T |
|
| Q |
272 |
gagatgatgt |
281 |
Q |
| |
|
|| ||||||| |
|
|
| T |
24615328 |
gaaatgatgt |
24615319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 281
Target Start/End: Complemental strand, 24711926 - 24711717
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatggtgaa |
174 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||| || | ||||||||||||||||||||| | ||| |
|
|
| T |
24711926 |
aggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacgatgag |
24711827 |
T |
|
| Q |
175 |
gagagtaatgagggttaaatta---tgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggaga |
271 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |||| |||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
24711826 |
gagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatgataatgaaaataactatactattatgatggagaga |
24711727 |
T |
|
| Q |
272 |
gagatgatgt |
281 |
Q |
| |
|
|| ||||||| |
|
|
| T |
24711726 |
gaaatgatgt |
24711717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 281
Target Start/End: Complemental strand, 24744922 - 24744713
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatggtgaa |
174 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||| || | ||||||||||||||||||||| | ||| |
|
|
| T |
24744922 |
aggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacgatgag |
24744823 |
T |
|
| Q |
175 |
gagagtaatgagggttaaatta---tgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggaga |
271 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |||| |||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
24744822 |
gagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatgataatgaaaataactatactattatgatggagaga |
24744723 |
T |
|
| Q |
272 |
gagatgatgt |
281 |
Q |
| |
|
|| ||||||| |
|
|
| T |
24744722 |
gaaatgatgt |
24744713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 281
Target Start/End: Complemental strand, 24757688 - 24757479
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatggtgaa |
174 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||| || | ||||||||||||||||||||| | ||| |
|
|
| T |
24757688 |
aggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacgatgag |
24757589 |
T |
|
| Q |
175 |
gagagtaatgagggttaaatta---tgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggaga |
271 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |||| |||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
24757588 |
gagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatgataatgaaaataactatactattatgatggagaga |
24757489 |
T |
|
| Q |
272 |
gagatgatgt |
281 |
Q |
| |
|
|| ||||||| |
|
|
| T |
24757488 |
gaaatgatgt |
24757479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 13935846 - 13935768
Alignment:
| Q |
45 |
gtgatatgaacgattaatacagattaatgctaaggaatcctataattgtgacaaagagtgatgacaattgatattatat |
123 |
Q |
| |
|
||||||| |||| || ||| ||| ||||| | ||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
13935846 |
gtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatat |
13935768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 24832039 - 24832087
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatattatatat |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
24832039 |
aggagtcctataattgtgacaaagagtgatgatgattaatattatatat |
24832087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 263
Target Start/End: Complemental strand, 9191172 - 9190957
Alignment:
| Q |
45 |
gtgatatgaacgattaatacagattaatgctaaggaatcctataattgtgacaaagagtgatgacaattgatat--tatatatgtgaataaataaatgcg |
142 |
Q |
| |
|
||||||| |||| || ||| ||| ||||| | ||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||| || |
|
|
| T |
9191172 |
gtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataaataaatacg |
9191073 |
T |
|
| Q |
143 |
gtgagaaacaatgtttatattataatggtgaagagagtaatgagggttaaattatgacgatgaggatgaaaatgtctatattataaagacgatgagaatg |
242 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||| ||||||||||||| || |||||||| ||||||||||||| | || | ||||||| |
|
|
| T |
9191072 |
atgagaaacaatgtttatattatatt-----aatgagtaatagtggttaaattatgatgacgaggatgataatgtctatattacaggaacaaagagaatg |
9190978 |
T |
|
| Q |
243 |
atgataactatactattatga |
263 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
9190977 |
atgataattatactattatga |
9190957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 8403921 - 8404005
Alignment:
| Q |
196 |
atgacgatgaggatgaaaatgtctatattataaagacgatgagaatgatgataactatactattatgatggggagagagatgatg |
280 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| || || |||||| |||| |||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
8403921 |
atgaagatgaggatgataatgtttatattttagtgatgatgaggatgacgataactatatcattatgatgatgagagtgatgatg |
8404005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 167 - 2
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatatt--atatatgtgaataaataaatgcggtgagaaacaatgtttatattataatggtgaa |
174 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||| || | ||||||||||||||||||||| | ||| |
|
|
| T |
167 |
aggaatcatataattttgacaacgagtgatgatgattgatattgtatatatgtgaataaataaatacgatatgaaacaatgtttatattataacgatgag |
68 |
T |
|
| Q |
175 |
gagagtaatgagggttaaat---tatgacgatgaggatgaaaatgtctatattataaagacgatga |
237 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||| |||| |||| |
|
|
| T |
67 |
gagagtaatgatggttaaattaatatgatgatgaggatgataatgtctatattatagagacaatga |
2 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 1567076 - 1567124
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatattatatat |
125 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1567076 |
aggaatcatataattgtgacaaagagtgatgacgattgatattatatat |
1567124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 37945836 - 37945961
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatattatatatgtgaataaataaatgcggtgagaa---acaatgtttatattataatggtga |
173 |
Q |
| |
|
||||||| ||||| ||| |||||| ||||||| |||||||||||||||| ||||||||||| || | |||| || |||||||||||| ||| |||| |
|
|
| T |
37945836 |
aggaatcatataactgtaacaaagtgtgatgatggttgatattatatatgtaaataaataaatacgataagaaatgacgatgtttatattacaatagtga |
37945935 |
T |
|
| Q |
174 |
agagagtaatgagggttaaattatga |
199 |
Q |
| |
|
|||||| | || ||||||||||||| |
|
|
| T |
37945936 |
tgagagtgaagatggttaaattatga |
37945961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 4531730 - 4531824
Alignment:
| Q |
45 |
gtgatatgaacgattaatacagattaatgctaaggaatcctataattgtgacaaagagtgatgacaattgatat--tatatatgtgaataaataaat |
139 |
Q |
| |
|
||||||| |||| || ||| ||| ||||| | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
4531730 |
gtgatataaacggttgatagagagtaatgatgaggaatcc-ataat-gtgacgaagagtgatgacaattgatattatatatatgtaaataaataaat |
4531824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 13477488 - 13477536
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatattatatat |
125 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
13477488 |
aggagtcctataactgtaacaaagagtgatgacgattaatattatatat |
13477536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 14481639 - 14481687
Alignment:
| Q |
77 |
aggaatcctataattgtgacaaagagtgatgacaattgatattatatat |
125 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
14481639 |
aggagtcctataactgtgacaaagagtgatgatgattaatattatatat |
14481687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5274 times since January 2019
Visitors: 4847