View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_75 (Length: 258)
Name: NF0750_low_75
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_75 |
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| [»] chr4 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 29880620 - 29880393
Alignment:
| Q |
30 |
agaacctccggctcggattactagattacagcagaacatgcatccaccattgtctattggaaggccagctgttccagttcaggttctggtagctccatca |
129 |
Q |
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| T |
29880620 |
agaacctccggctcggattactagattacagcagaacatgcctccaccattgtctattggaaggccagctgttccagttcaggttctggtagctccatca |
29880521 |
T |
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| Q |
130 |
caggctccttaccatccactacttggaccattaaagcctattagtggtccttctgttgttgacaactcatgcaccaacattgttgaatctctagtgtctg |
229 |
Q |
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| T |
29880520 |
caggctccttaccatccactacttggacctttaaagcctattagtggtccttctgttgttgacaactcatgcaccaaca-tgttgaatctctagtgtctg |
29880422 |
T |
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| Q |
230 |
ctttcatgagaaattttcaaaactcaacg |
258 |
Q |
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| T |
29880421 |
ctttcatgagaaattttcaaaactcaacg |
29880393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 29883184 - 29883360
Alignment:
| Q |
80 |
tgtctattggaaggccagctgttccagttcaggttctggtagctccatcacaggctccttaccatccactacttggaccattaaagcctattagtggtcc |
179 |
Q |
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| T |
29883184 |
tgtctattggaaggccaccagttccactttaggttccgatagctccatcacaggctcctaaccatccactacttggacctttgaagcatattattggtcc |
29883283 |
T |
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| Q |
180 |
ttctgttgttgacaactcatgcaccaacattgttgaatctctagtgtctgctttcatgagaaattttcaaaactcaa |
256 |
Q |
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| T |
29883284 |
ttctgttgttgaaaactcatgtaccaacattgttgaatctccaatttctgctttcatgagaaattttcaaaactcaa |
29883360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 29890514 - 29890330
Alignment:
| Q |
72 |
tccaccattgtctattggaaggccagctgttccagttcaggttctggtagctccatcacaggctccttaccatccactacttggaccattaaagcctatt |
171 |
Q |
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| T |
29890514 |
tccaccattgtctattggaaggccaccggttctagtttaggttctgatagcttcatcacatgctcctaaccatccactacgtggacctttgaagcctatt |
29890415 |
T |
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| Q |
172 |
agtggtccttctgttgttgacaactcatgcaccaacattgttgaatctctagtgtctgctttcatgagaaattttcaaaactcaa |
256 |
Q |
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| T |
29890414 |
attggtcattctgttattgaaagctcatgtaccaacattgttgaatctccaatttttgctttcgtgagaaattttcaaaactcaa |
29890330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 29890670 - 29890894
Alignment:
| Q |
30 |
agaacctccggctcggattactagattacagcagaacatgcatccaccattgtctattggaaggccagctgttccagttcaggttctggtagctccatca |
129 |
Q |
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| T |
29890670 |
agaacctccggataagtttactagattacagaggattaggcctccatcattgtctattggaaggccaccggttccagttcaagttctgatagctgcatca |
29890769 |
T |
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| Q |
130 |
caggctcctta-ccatccactacttggaccattaaagcctattagtggtccttctgttgttgacaactcatgcaccaacattgttgaatctctagtgtct |
228 |
Q |
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| T |
29890770 |
cgggctcttaaaccatccactacctggacctttgaagtctatt---ggtccttctgttgttgaaaactcatgtaccaacattgttgaatctccaatttct |
29890866 |
T |
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| Q |
229 |
gctttcatgagaaattttcaaaactcaa |
256 |
Q |
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| T |
29890867 |
gctttaatgagaaattttcaaaactcaa |
29890894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 27929827 - 27929859
Alignment:
| Q |
226 |
tctgctttcatgagaaattttcaaaactcaacg |
258 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
27929827 |
tctgctttcatgagaaattttcaagactcaacg |
27929859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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