View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0750_low_81 (Length: 252)
Name: NF0750_low_81
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_81 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 48416649 - 48416873
Alignment:
| Q |
13 |
agcatagggactcgagaatgtgtgctgcaataccacatccaaaacaacatggggactccaaaatttgtgctgcatattatagaataaaaatcttagctca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48416649 |
agcatagggactcgagaatgtgtgctgcaatatcacatccaaaacaacacggggactccaaaatttgtgctgcatattatagaataaaaatcttagctca |
48416748 |
T |
|
| Q |
113 |
atgtccaaacatagacttggccccggctagctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggct |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48416749 |
atgtccaaacatagacttggccccagctagctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggct |
48416848 |
T |
|
| Q |
213 |
ttctagagtcatcacggatgccttt |
237 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
48416849 |
ttctagagtcatcacggttgccttt |
48416873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 48421897 - 48422117
Alignment:
| Q |
13 |
agcatagggactcgagaatgtgtgctgcaataccacatccaaaacaacatggggactccaa-aatttgtgctgcatattatagaataaaaatcttagctc |
111 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||||||||||||| | |||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48421897 |
agcatggggagtcgagaatttgtgctgcaataccacatccaaaacagtacggggactcagagaatttgtgttgcatattatagaataaaaatcttagctc |
48421996 |
T |
|
| Q |
112 |
aatgtccaaacatagacttggccccggctag---ctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtg |
208 |
Q |
| |
|
||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
48421997 |
aatgtccaaacatagacctggcctccgctactacctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggatttgcagatatgggtg |
48422096 |
T |
|
| Q |
209 |
ggctttctagagtcatcacgg |
229 |
Q |
| |
|
| || |||||||||||||||| |
|
|
| T |
48422097 |
gactctctagagtcatcacgg |
48422117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 48410398 - 48410523
Alignment:
| Q |
90 |
tatagaataaaaatcttagctcaatgtccaaacatagacttggccccggct---agctcctgctaacatcccaacctcataagagtgtgcatcaaattta |
186 |
Q |
| |
|
|||||||||||| |||||||| ||||||| | |||||| ||||| | || ||||||||||| ||||||||||||| |||||| |||||||||| | |
|
|
| T |
48410398 |
tatagaataaaattcttagcttgatgtccagatatagacctggcctccacttgtagctcctgctagcatcccaacctcacaagagtttgcatcaaatctg |
48410497 |
T |
|
| Q |
187 |
agtggaattgcagatatgagtgggct |
212 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
48410498 |
catggaattgcagatatgtgtgggct |
48410523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5354 times since January 2019
Visitors: 4850