View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_82 (Length: 252)

Name: NF0750_low_82
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_82
NF0750_low_82
[»] chr8 (1 HSPs)
chr8 (18-243)||(37436472-37436696)
[»] chr7 (3 HSPs)
chr7 (74-243)||(477966-478130)
chr7 (86-175)||(21978947-21979036)
chr7 (78-152)||(28195315-28195390)
[»] chr1 (5 HSPs)
chr1 (74-243)||(35812152-35812317)
chr1 (77-152)||(12429308-12429383)
chr1 (76-152)||(20990321-20990397)
chr1 (74-152)||(12698908-12698986)
chr1 (86-119)||(15386443-15386476)
[»] chr4 (2 HSPs)
chr4 (74-155)||(33818872-33818953)
chr4 (74-152)||(44203649-44203727)
[»] chr3 (2 HSPs)
chr3 (158-243)||(28144874-28144959)
chr3 (158-243)||(28080394-28080475)
[»] chr5 (1 HSPs)
chr5 (74-137)||(13575696-13575759)
[»] chr2 (2 HSPs)
chr2 (144-243)||(22650263-22650360)
chr2 (74-149)||(41454893-41454968)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 37436472 - 37436696
Alignment:
Q  18 ttaaggtacaagtacgtcaataaaatcatgaggnnnnnnnncatagaatatatatcagagctaaatttttcaatttacaacaaaaacatcacgataaaag 117  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37436472 ttaaggtacaagtacgtcaataaaatcatgaggttttttt-catagaatatatattagagctaaatttttcaatttacaacaaaaacatcacgataaaag 37436570  T
Q  118 tttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatgcacatagaacaatatattgtcatattaatatacatgagaaagtc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37436571 tttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatgcacatataacaatatattgtcatattaatatacatgagaaagtc 37436670  T
Q  218 gcaattttcactcatagtagaataat 243  Q
    ||||||||||||||||||||||||||    
T  37436671 gcaattttcactcatagtagaataat 37436696  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 477966 - 478130
Alignment:
Q  74 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatg 173  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||  |     ||||||||||||||    
T  477966 agagctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttacaacagca-----aaaaaactcatatg 478060  T
Q  174 cacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 243  Q
    |||  | |||| |||||| ||||||||||||||| ||||||||| ||||||||| ||| |||||||||||    
T  478061 cacgcataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataat 478130  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 21978947 - 21979036
Alignment:
Q  86 ttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatgca 175  Q
    ||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||| || ||  | ||||||||||||||||    
T  21978947 ttcaatttacaacaaaaacatcatgataaaagtttaaaaagctgaaaactagtgttggttacaaaaaaaaataaaaaaaactcatatgca 21979036  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 28195390 - 28195315
Alignment:
Q  78 ctaaatttttcaatttacaacaaaaa-catcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 152  Q
    ||||||| ||||| || ||||||||| |||||| ||| ||||||| ||||| ||||||||| ||||||||||||||    
T  28195390 ctaaattcttcaactttcaacaaaaaacatcacaatagaagtttaaaaagtcgaaaattagagttggttacaacaa 28195315  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 35812152 - 35812317
Alignment:
Q  74 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatg 173  Q
    |||||| |||| |||||||||||||||||| || |||||||||||||| ||||| ||||| ||| |||||||||||||| ||    | |||||||| |||    
T  35812152 agagctgaattcttcaatttacaacaaaaatattacgataaaagtttaaaaagtcgaaaactagagttggttacaacaacaa----ataaaactcaaatg 35812247  T
Q  174 cacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 243  Q
    |||||| |||| ||||||||||||||||| || | |||| || | ||||||| ||||| | |||||||||    
T  35812248 cacatacaacactatattgtcatattaatctataagagagagccacaatttttactcacaatagaataat 35812317  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 12429383 - 12429308
Alignment:
Q  77 gctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 152  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||| ||||| ||||||||  |||||||| |||||    
T  12429383 gctaaattcttctatttacatcaaaaacatcacgataaaagtttaaaaagtcgaaaattaaagttggttataacaa 12429308  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 20990321 - 20990397
Alignment:
Q  76 agctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 152  Q
    ||||||||| ||||||||||||||||| |||||  |||||| |||| |||||||||||| || ||||||| ||||||    
T  20990321 agctaaattcttcaatttacaacaaaaccatcataataaaattttaaaaagttgaaaatcagagttggtttcaacaa 20990397  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 12698986 - 12698908
Alignment:
Q  74 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 152  Q
    |||||||| || |||||||||| | ||||||| || |||||||||||| ||| |  |||||||| ||||| ||||||||    
T  12698986 agagctaagttcttcaatttacgataaaaacagcaagataaaagtttaaaaactcaaaaattagagttggatacaacaa 12698908  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 15386443 - 15386476
Alignment:
Q  86 ttcaatttacaacaaaaacatcacgataaaagtt 119  Q
    |||||||||||||||||||||||| |||||||||    
T  15386443 ttcaatttacaacaaaaacatcacaataaaagtt 15386476  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 33818953 - 33818872
Alignment:
Q  74 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataa 155  Q
    ||||||||||| |||||||| |||||||||||||| |  |||| |||| ||||| ||| ||||| ||||| |||||||||||    
T  33818953 agagctaaattcttcaatttgcaacaaaaacatcaagccaaaaatttaaaaagtagaatattagagttggctacaacaataa 33818872  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 44203649 - 44203727
Alignment:
Q  74 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 152  Q
    |||| |||||| ||||| | |||||||||||| ||| |||||| || | |||||||||| |||| ||||||||||||||    
T  44203649 agagataaattcttcaactgacaacaaaaacagcacaataaaaattaaaaaagttgaaatttagagttggttacaacaa 44203727  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 28144959 - 28144874
Alignment:
Q  158 acaaaaaactcatatgcacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 243  Q
    ||||||||||| |||||| ||| || | |||||| ||||||||||| | | ||||||||| ||||||||| ||| | |||||||||    
T  28144959 acaaaaaactcctatgcaaatataatactatattatcatattaataaataagagaaagtcacaattttcaatcacaatagaataat 28144874  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 28080475 - 28080394
Alignment:
Q  158 acaaaaaactcatatgcacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 243  Q
    ||||||||||| |||||||||| || | |||||| ||||||    ||| | ||||||||| ||||||||||||| | |||||||||    
T  28080475 acaaaaaactcctatgcacatataaaactatattatcatat----atataagagaaagtcacaattttcactcacaatagaataat 28080394  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 13575696 - 13575759
Alignment:
Q  74 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattag 137  Q
    ||||||||||| || || |||||||||||||||||||||| || |||| |||||  ||||||||    
T  13575696 agagctaaattctttaacttacaacaaaaacatcacgatagaactttaaaaagtcaaaaattag 13575759  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 22650263 - 22650360
Alignment:
Q  144 ttacaacaataacaacaaaaaactcatatgcacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 243  Q
    ||||||||| ||||| |||||||||| ||||||||| || | |||||  | ||||||||||| |  ||||| || ||||||||||||||| |||||||||    
T  22650263 ttacaacaacaacaa-aaaaaactcagatgcacatataatactatata-tgatattaatatataaaagaaaatcacaattttcactcataatagaataat 22650360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 41454968 - 41454893
Alignment:
Q  74 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaa 149  Q
    |||| |||||| ||| ||| |||||||||| ||||| ||| ||||||| ||||| |||| |||| |||||||||||    
T  41454968 agagttaaattcttcgattcacaacaaaaaaatcacaatagaagtttaaaaagtcgaaatttagagttggttacaa 41454893  T

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