View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_low_85 (Length: 250)

Name: NF0750_low_85
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_low_85
NF0750_low_85
[»] chr4 (10 HSPs)
chr4 (1-239)||(20874145-20874383)
chr4 (79-236)||(11555361-11555517)
chr4 (79-236)||(17335056-17335212)
chr4 (78-231)||(16285646-16285799)
chr4 (78-231)||(15873495-15873647)
chr4 (79-236)||(11935878-11936033)
chr4 (55-141)||(11331283-11331369)
chr4 (78-236)||(12228375-12228532)
chr4 (71-234)||(8807711-8807872)
chr4 (178-236)||(9563747-9563805)
[»] chr5 (13 HSPs)
chr5 (8-236)||(24562594-24562818)
chr5 (8-236)||(24603628-24603852)
chr5 (1-141)||(17445824-17445960)
chr5 (73-145)||(24614835-24614907)
chr5 (73-145)||(24711233-24711305)
chr5 (73-145)||(24744229-24744301)
chr5 (73-145)||(24756995-24757067)
chr5 (79-231)||(24832591-24832741)
chr5 (90-236)||(17014713-17014858)
chr5 (194-236)||(24671203-24671245)
chr5 (194-236)||(24707979-24708021)
chr5 (194-236)||(24740973-24741015)
chr5 (194-236)||(24753742-24753784)
[»] chr7 (9 HSPs)
chr7 (54-236)||(37946403-37946585)
chr7 (78-231)||(20025336-20025489)
chr7 (78-236)||(16059885-16060044)
chr7 (78-236)||(48376135-48376293)
chr7 (78-236)||(22615303-22615464)
chr7 (79-236)||(9079681-9079838)
chr7 (99-211)||(13486390-13486502)
chr7 (78-236)||(4532323-4532481)
chr7 (78-145)||(11654964-11655031)
[»] chr1 (3 HSPs)
chr1 (71-236)||(51659273-51659438)
chr1 (105-236)||(1567332-1567463)
chr1 (78-232)||(13882893-13883048)
[»] scaffold0218 (1 HSPs)
scaffold0218 (78-236)||(13712-13870)
[»] chr3 (11 HSPs)
chr3 (78-236)||(13927595-13927753)
chr3 (78-236)||(4713423-4713581)
chr3 (78-236)||(13929333-13929491)
chr3 (78-231)||(16613845-16613998)
chr3 (78-231)||(22045255-22045408)
chr3 (78-231)||(14482175-14482328)
chr3 (78-231)||(16363191-16363343)
chr3 (134-236)||(14063106-14063208)
chr3 (78-188)||(17790328-17790438)
chr3 (78-188)||(19098770-19098880)
chr3 (78-236)||(14055651-14055809)
[»] scaffold0003 (1 HSPs)
scaffold0003 (71-236)||(130123-130288)
[»] chr6 (6 HSPs)
chr6 (78-233)||(14980889-14981044)
chr6 (78-231)||(8404386-8404538)
chr6 (8-141)||(977222-977351)
chr6 (73-236)||(10907387-10907549)
chr6 (78-236)||(10641929-10642083)
chr6 (113-231)||(9190274-9190392)
[»] chr2 (7 HSPs)
chr2 (99-236)||(23661443-23661580)
chr2 (78-230)||(24786072-24786223)
chr2 (78-236)||(44587012-44587170)
chr2 (71-230)||(13361209-13361369)
chr2 (70-211)||(32252683-32252823)
chr2 (84-230)||(27470740-27470884)
chr2 (73-231)||(16858172-16858332)
[»] scaffold0145 (1 HSPs)
scaffold0145 (78-231)||(11917-12070)
[»] scaffold0239 (1 HSPs)
scaffold0239 (78-231)||(21765-21918)
[»] scaffold0063 (1 HSPs)
scaffold0063 (78-236)||(28885-29041)
[»] scaffold0385 (1 HSPs)
scaffold0385 (78-231)||(13591-13743)
[»] scaffold0601 (1 HSPs)
scaffold0601 (78-231)||(5459-5611)
[»] scaffold1001 (1 HSPs)
scaffold1001 (78-145)||(879-946)
[»] chr8 (1 HSPs)
chr8 (175-236)||(24505499-24505560)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20874145 - 20874383
Alignment:
Q  1 acatgacgatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20874145 acatgacgatattttgtaatttggtgacgtcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgt 20874244  T
Q  101 gatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20874245 gatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccaatgaaatttatttaatgtgcgtgttttttcc 20874344  T
Q  201 tattattatgtcatggcaggatttctcaccctttatatt 239  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  20874345 tattattatgtcatggcaggatttctcacgctttatatt 20874383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 11555517 - 11555361
Alignment:
Q  79 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaattt 178  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||  ||||||||| |||||||||| |  || || || ||| ||||  | ||| ||||    
T  11555517 tgtgaaaatgatgtgttgcagtgatatgtgaaa-gaagagattatgaataataattattgagagtgaagatatggtggaaattatattattttgatattt 11555419  T
Q  179 atttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  11555418 atttaatatgcgtgtttttccctattattatgttatgacaggatttctcaccccttat 11555361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 17335212 - 17335056
Alignment:
Q  79 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaattt 178  Q
    |||||| |||||||| ||| ||||| ||||||| || ||||||||| ||||||| |||||||||||||| |||| | |||||| ||||| | ||| ||||    
T  17335212 tgtgaatatgatgtgctgctgtgatatgtgaaatgaggagattatatataataactgttgagagtgatgggataatggagattatattcttttgatattt 17335113  T
Q  179 atttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||||||| || ||| |||||||||||||||||| |||| |||||||| ||||| ||||    
T  17335112 atttaat-tgtgtgctttttcctattattatgttatggaaggatttcccaccccttat 17335056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 16285646 - 16285799
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||||||||||||||   ||||| ||||||||||||| ||||| ||||||||  |||| |||||| |  || || |||||| | ||  | ||| |||    
T  16285646 gtgtgaaaatgatgtgttttagtgatctgtgaaaagaagatattatgcataataaccgttgggagtgaagatatggtggagattattttattttgatatt 16285745  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||    
T  16285746 tatttaatatgcgtgtttttccctattcttatgttatggtaggatttctcaccc 16285799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 15873495 - 15873647
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| ||| |||| ||  ||||| ||||||| ||||| |||||||||| ||| || ||||||||||| |||||| |||| | ||||| | ||| |||    
T  15873495 gtgtgaagatgttgtgctgttgtgatatgtgaaatgaagacattatacatagtaactgctgagagtgatgagatagtggagactatattcttttgatatt 15873594  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||||||  ||  |||||||| || ||||| ||||| |||||||||||||    
T  15873595 tatttaatgtgaatg-cttttcctaataatatgttatggctggatttctcaccc 15873647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 11936033 - 11935878
Alignment:
Q  79 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgaga-gtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||| ||||| |||||||| || ||||||||| || ||||||||||| ||||||||||||| |  ||||| ||||||||||||||||| | ||||  ||     
T  11936033 tgtggaaatggtgtgttgcagttatttgtgaagaggagagattatacttaataattgttgaaatttgatgagatagtagagattgtatccttatgttata 11935934  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    || |||   || ||| |||| |||||||||||   ||||||| ||||||||||| ||||    
T  11935933 taattataatgtgtgcttttccctattattat---atggcagaatttctcaccccttat 11935878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 11331369 - 11331283
Alignment:
Q  55 tgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgaga 141  Q
    ||||||||||| |   |||||||||||||||||||||||||  |||||| ||||||   |||||||||||||| || ||||||||||    
T  11331369 tgatgtttatgtttggtgtttatgtgtgaaaatgatgtgtttacgtgatatgtgaaccaaagagattatacattatgattgttgaga 11331283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 12228532 - 12228375
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||  ||||||||||  ||||| ||||||||||||||||||| | |||||| |||||||||||| |  || || | |||| | ||  | ||  |||    
T  12228532 gtgtgaaggtgatgtgttgttgtgatctgtgaaaagaagagattatgcgtaataactgttgagagtgaagatatggt-gggattattttattttgttatt 12228434  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||||  |||||| |||| ||||||||||||| ||| |||||||| |||||| ||||    
T  12228433 tatttaacatgcgtgcttttccctattattatgttatgtcaggatttatcaccccttat 12228375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 8807872 - 8807711
Alignment:
Q  71 tgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccta 170  Q
    ||||||||||||||||||||||||||  ||||| ||  ||  ||||||||||||||| ||   ||||||||   ||| |||| |||||||| ||||  |     
T  8807872 tgtttatgtgtgaaaatgatgtgttgttgtgatatgataat-gaagagattatacatgatggatgttgagaca-atgtgataatagagattatatttttc 8807775  T
Q  171 tgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcacccttt 234  Q
    | |   ||||| ||||||||||||||  |||||  |||||| ||||| ||||||||||||||||    
T  8807774 taatgcttattaaatgtgcgtgttttcccctatgtttatgttatggctggatttctcacccttt 8807711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 9563805 - 9563747
Alignment:
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||| ||||| ||| ||| | ||||||||||| ||||||||||||||||||| ||||    
T  9563805 tatttattgtgcatgtgtttccatattattatgttatggcaggatttctcaccccttat 9563747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 24562818 - 24562594
Alignment:
Q  8 gatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgt 107  Q
    |||||||||| |||||||||| || || |||||    |||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  24562818 gatattttgtgatttggtgacgtcatggatgat----gtgtaattgttgatgtttatgctaattgtttatgtgtgaaaataatgtgttgtcgtgatttgt 24562723  T
Q  108 gaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctattatt 207  Q
    |||||||| ||  ||||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  24562722 gaaaagaaaaggctatacatgataaccgttgagagtgatgcgatagtagaaattgtattcctatgaaatttatttaatgtgcgtgcttttccctattatt 24562623  T
Q  208 atgtcatggcaggatttctcaccctttat 236  Q
    |||| ||||||||||||||||||| ||||    
T  24562622 atgttatggcaggatttctcaccccttat 24562594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 24603852 - 24603628
Alignment:
Q  8 gatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgt 107  Q
    |||||||||| |||||||||| || || |||||    |||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  24603852 gatattttgtgatttggtgacgtcatggatgat----gtgtaattgttgatgtttatgctaattgtttatgtgtgaaaataatgtgttgtcgtgatttgt 24603757  T
Q  108 gaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctattatt 207  Q
    |||||||| ||  ||||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  24603756 gaaaagaaaaggctatacatgataaccgttgagagtgatgcgatagtagaaattgtattcctatgaaatttatttaatgtgcgtgcttttccctattatt 24603657  T
Q  208 atgtcatggcaggatttctcaccctttat 236  Q
    |||| ||||||||||||||||||| ||||    
T  24603656 atgttatggcaggatttctcaccccttat 24603628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 17445960 - 17445824
Alignment:
Q  1 acatgacgatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgt 100  Q
    |||||| ||||||||||||||||||||| || ||||||||    |||||||| |||||||||||| |||||||||||||||||||||||||||||   ||    
T  17445960 acatgatgatattttgtaatttggtgacgtcatgaatgat----gtgtaattgttgatgtttatgttaattgtttatgtgtgaaaatgatgtgttattgt 17445865  T
Q  101 gatttgtgaaaagaagagattatacataataattgttgaga 141  Q
    ||  |||| || |||||||||||| ||||| ||||||||||    
T  17445864 gacatgtggaaggaagagattatatataatgattgttgaga 17445824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 24614907 - 24614835
Alignment:
Q  73 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 145  Q
    |||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24614907 tttaagtgggaaaatgatgtgttgttgtgatatgtgaaaagaagagattacacataataattgttgagagtga 24614835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 24711305 - 24711233
Alignment:
Q  73 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 145  Q
    |||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24711305 tttaagtgggaaaatgatgtgttgttgtgatatgtgaaaagaagagattacacataataattgttgagagtga 24711233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 24744301 - 24744229
Alignment:
Q  73 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 145  Q
    |||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24744301 tttaagtgggaaaatgatgtgttgttgtgatatgtgaaaagaagagattacacataataattgttgagagtga 24744229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 24757067 - 24756995
Alignment:
Q  73 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 145  Q
    |||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24757067 tttaagtgggaaaatgatgtgttgttgtgatatgtgaaaagaagagattacacataataattgttgagagtga 24756995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 231
Target Start/End: Original strand, 24832591 - 24832741
Alignment:
Q  79 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaattt 178  Q
    ||||||||||| ||| ||  |||||||||||||||  ||||||||  ||||||| |||||||||||| |  || || |||||| ||||    ||| |||     
T  24832591 tgtgaaaatgacgtgctgtagtgatttgtgaaaag--gagattatgtataataactgttgagagtgaagatatggtggagattatattatcttgatattg 24832688  T
Q  179 atttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    ||||||| || | |||||| ||||||||||||| |||||||||||||||||||    
T  24832689 atttaatatgtgcgtttttccctattattatgttatggcaggatttctcaccc 24832741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 17014858 - 17014713
Alignment:
Q  90 tgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgc 189  Q
    |||| |||||| ||| || || ||||||||| |||  |||||| |||||| | ||||| ||||||||||||||||||||||||  ||||| |  ||||||    
T  17014858 tgtgctgccgttattagtaaagagaagagatcatatttaataactgttgaaattgatgagatagtagagattgtattcctatggtatttaatcgatgtgc 17014759  T
Q  190 gtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
     || |||| ||||| ||||||| || |  ||||||||||||||||||    
T  17014758 ttgcttttccctatcattatgttat-gatggatttctcaccctttat 17014713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 24671245 - 24671203
Alignment:
Q  194 tttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24671245 ttttccctattattatgttatggcaggatttctcaccccttat 24671203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 24708021 - 24707979
Alignment:
Q  194 tttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24708021 ttttccctattattatgttatggcaggatttctcaccccttat 24707979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 24741015 - 24740973
Alignment:
Q  194 tttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24741015 ttttccctattattatgttatggcaggatttctcaccccttat 24740973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 24753784 - 24753742
Alignment:
Q  194 tttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24753784 ttttccctattattatgttatggcaggatttctcaccccttat 24753742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 37946403 - 37946585
Alignment:
Q  54 ttgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatag 153  Q
    |||||||||||| ||| ||||||||||| ||||||| ||||||| ||||| ||||||| |||||||||||||||||||| ||| |||||||||| ||  |    
T  37946403 ttgatgtttatgataaatgtttatgtgtaaaaatgaagtgttgctgtgatatgtgaaatgaagagattatacataataactgtggagagtgatgagacgg 37946502  T
Q  154 tagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    | |||||| ||||| | ||| |||||||||| |||| |  |||||||||||||||||| ||| || ||||| |||||| ||||    
T  37946503 tggagattatattcttttgatatttatttaaggtgcatactttttcctattattatgttatgacatgatttatcaccccttat 37946585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 20025489 - 20025336
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||||||||||||  |  ||  | |||||| ||||  | ||| |||    
T  20025489 gtgtgaaaatgatgtgctgatgtgatatgtgaaaagaagagattatacataataattgttgagagtggagatatgttggagattatattattttgatatt 20025390  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||| ||| ||||||| ||||||||||||| |||||||||||||| ||||    
T  20025389 tatttaatatgcatgtttttccctattattatgttatggcaggatttcttaccc 20025336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 16060044 - 16059885
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||| |||    
T  16060044 gtgtgaatatgatgtgctgctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttttgatatt 16059945  T
Q  178 tattt-aatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  16059944 tattttaatgtgcatgtttttccctattattttgttatggcaggatttctcaccccttat 16059885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 48376293 - 48376135
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| ||||||||||||  |||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||| |||    
T  48376293 gtgtgaatatgatgtgttgctctgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttttgatatt 48376194  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||||||||| || |||| ||| ||||| ||| ||||||||||||||||||| ||||    
T  48376193 tatttaatgtgcatgcttttccctgttattttgttatggcaggatttctcaccccttat 48376135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 22615303 - 22615464
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagt---gatgcgatagtagagattgtattcctatgaa 174  Q
    ||||||||||||| || |   ||||||||||||||||||||||||| |||||||| | ||||||||   || |  ||||| |||||| ||||  | |||     
T  22615303 gtgtgaaaatgatatgctttagtgatttgtgaaaagaagagattatgcataataactattgagagtgaagaagatatagtggagattatattattttgat 22615402  T
Q  175 atttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||||||||| | |  |||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  22615403 atttatttagtatatgtgtttttccctattattatgttatggcaggatttctcaccccttat 22615464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 9079838 - 9079681
Alignment:
Q  79 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaattt 178  Q
    |||||| ||||||||  || ||||  ||| ||| |||||||||||||||| ||| |||||||| |  || |||||| || | | ||||| | ||| ||||    
T  9079838 tgtgaatatgatgtgcagctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatcttgagatagtggaaactatattcttttgatattt 9079739  T
Q  179 atttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||||||||||| || ||||  |||||||||||| |||||| |||||||||||||||||    
T  9079738 atttaatgtgcatgcttttctctattattatgttatggcatgatttctcaccctttat 9079681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 13486390 - 13486502
Alignment:
Q  99 gtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgtttttt 198  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||| |  ||| |||||||| ||||  | ||| ||||||||||| || | ||||||     
T  13486390 gtgatttgtgaaaagaagatattatgcataataactgttgagagtgaagatatattagagattatattattttgatatttatttaatatgtgagtttttc 13486489  T
Q  199 cctattattatgt 211  Q
    |||||||||||||    
T  13486490 cctattattatgt 13486502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 4532323 - 4532481
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||||||| ||||| ||  ||| | | |||||||||||| ||| || ||||||||||| |||||| |||| | ||||| | | | |||    
T  4532323 gtgtgaagatgatgtgttgctgtgatatggaaaatggaaagattatacatagtaactgctgagagtgatgagatagtggagaatatattcttttaatatt 4532422  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||||||| |||| ||  ||||||||||||||||| ||| ||||||  ||||||| ||||    
T  4532423 tatttaacgtgcatgcattttcctattattatgttatgacaggatacctcaccccttat 4532481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 11655031 - 11654964
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 145  Q
    |||||||||||||||| | | ||||||||||||||||||||||||| |||||||| |||  |||||||    
T  11655031 gtgtgaaaatgatgtgcttcagtgatttgtgaaaagaagagattatgcataataactgtcaagagtga 11654964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 51659273 - 51659438
Alignment:
Q  71 tgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccta 170  Q
    |||||| ||||||| |||| ||| ||| ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| |     
T  51659273 tgtttaagtgtgaatatgacgtgctgctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttt 51659372  T
Q  171 tgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  51659373 tgatatttatttaatgtgcatgtttttccctattattatgttatggcaggatttctcaccccttat 51659438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 1567332 - 1567463
Alignment:
Q  105 tgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctatt 204  Q
    ||||||| |||||||||||||||||||| | |||| |||||||||| |||||  ||| ||||| | | | ||||||||||||||| ||| ||| ||||||    
T  1567332 tgtgaaatgaagagattatacataataactattgatagtgatgcgacagtaggaattatattctttttatatttatttaatgtgcatgtgtttccctatt 1567431  T
Q  205 attatgtcatggcaggatttctcaccctttat 236  Q
    ||||||| || |||||||||||||||| ||||    
T  1567432 attatgttatagcaggatttctcaccccttat 1567463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 13882893 - 13883048
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| |||| |||| ||| |||||||||||||||| |||||||||||  ||||| |||||| |||| | ||||| | ||| |||    
T  13882893 gtgtgaatatgatgtgctgctgtgacttgtaaaatgaagagattatacatagtaattgttgagtctgatgagatagtggagactatattcttttgatatt 13882992  T
Q  178 tatttaatgtgcgtgttttttcctatta-ttatgtcatggcaggatttctcaccct 232  Q
    |||||||||||| ||||||| ||||||| || | | |||| |||||||||||||||    
T  13882993 tatttaatgtgcatgtttttccctattatttttattatggtaggatttctcaccct 13883048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 13870 - 13712
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||||||| ||||  ||| ||| |||||||||||||||| ||| | |||||| ||||| |||||| |||| ||||||| | ||| |||    
T  13870 gtgtgaatatgatgtgttgctgtgacatgtaaaatgaagagattatacatagtaactattgagaatgatgagatagtggagaatgtattcttttgatatt 13771  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||||||||| || |||| ||||||||| ||| |||||||||||||| |||||||||    
T  13770 tatttaatgtgcatgcttttccctattattttgttatggcaggatttcttaccctttat 13712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 13927595 - 13927753
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||||||||| ||  || || ||||||| |||||||||||||||||||| |||||||||||||| || |||   |||| ||||| | ||| |||    
T  13927595 gtgtgaaaatgatgtgctgttgttatatgtgaaatgaagagattatacataataactgttgagagtgatgagacagtgtggattatattcttttgatatt 13927694  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    || ||||||||||||||||| ||||||||||||| ||| || |||||||||||| ||||    
T  13927695 taattaatgtgcgtgtttttccctattattatgttatgacaagatttctcaccccttat 13927753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 4713423 - 4713581
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||||||| ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||| |||    
T  4713423 gtgtgaatatgatgtgttgctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttttgatatt 4713522  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||||||||| || |||| ||||||||| ||| |||||| |||||||||||| ||||    
T  4713523 tatttaatgtgcatgcttttccctattattttgttatggcatgatttctcaccccttat 4713581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 13929333 - 13929491
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||||||||| |||  |||| ||| ||| |||| |||||||||||||||||||||||||||||| || |||   |||| ||||| | ||| |||    
T  13929333 gtgtgaaaatgatgtgctgctatgatatgttaaatgaagggattatacataataattgttgagagtgatgagacagtgtggattatattcttttgatatt 13929432  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    || ||||||||| ||||||| ||||||||||||| |||  |||||||||||||| ||||    
T  13929433 taattaatgtgcttgtttttccctattattatgttatgataggatttctcaccccttat 13929491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 16613998 - 16613845
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| |||| |||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||  |||    
T  16613998 gtgtgaatatgatgtgctgctgtgacttgtaaaatgaagagattatacatagtaactgttgagactgatgagatagtggagactatattcttttggtatt 16613899  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||||||| || |||| ||||||||| | | |||||||||||||||||||    
T  16613898 tatttaatgtgcatgcttttccctattattttattatggcaggatttctcaccc 16613845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 22045255 - 22045408
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| |||| |||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||  |||    
T  22045255 gtgtgaatatgatgtgctgctgtgacttgtaaaatgaagagattatacatagtaactgttgagactgatgagatagtggagactatattcttttggtatt 22045354  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||||||| || |||| ||||||||| | | |||||||||||||||||||    
T  22045355 tatttaatgtgcatgcttttccctattattttattatggcaggatttctcaccc 22045408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 14482175 - 14482328
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||||| ||||| |  || ||  ||||| ||||    ||| |||    
T  14482175 gtgtgaagatgatgtgctgtagtgatttgtgaaaagaagagattatgcataataactgttgacagtgaagatatggtgaagattatattatcttgatatt 14482274  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||| || |||||||| |||||||||| || ||| ||| |||||||||||    
T  14482275 tatttaatatgtgtgtttttccctattattacgttatgacagaatttctcaccc 14482328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 16363191 - 16363343
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| ||||| |||||   |||||||||||||||| ||| || |||||| |||| |||||| |||| | ||||||| | | |||    
T  16363191 gtgtgaatatgatgtgctgctgtgatatgtgatctgaagagattatacatagtaactgctgagagagatgagatagtggagactatattccttttatatt 16363290  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||||||| ||  |||||||| || ||||| ||||| |||||||||||||    
T  16363291 tatttaatgtgcatg-cttttcctaataatatgttatggctggatttctcaccc 16363343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 14063106 - 14063208
Alignment:
Q  134 tgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctt 233  Q
    |||||||| | ||| || ||| |||| | ||||| | ||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |    
T  14063106 tgttgagaatcatgagaaagtggagactatattcttttgatatttatttaatgtgcatgtttttccctattattatgttatggcaggatttctcacccct 14063205  T
Q  234 tat 236  Q
    |||    
T  14063206 tat 14063208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 17790438 - 17790328
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||| ||||| ||  ||||||||| ||||||||||||||| |||||||| |||||||||||| |  || || |||||| ||||  | ||| |||    
T  17790438 gtgtgaaaataatgtgctgtagtgatttgtaaaaagaagagattatgcataataactgttgagagtgaagatatggtggagattatattattttgatatt 17790339  T
Q  178 tatttaatgtg 188  Q
    |||||||||||    
T  17790338 tatttaatgtg 17790328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 19098880 - 19098770
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||| ||||| ||  ||||||||| ||||||||||||||| |||||||| |||||||||||| |  || || |||||| ||||  | ||| |||    
T  19098880 gtgtgaaaataatgtgctgtagtgatttgtaaaaagaagagattatgcataataactgttgagagtgaagatatggtggagattatattattttgatatt 19098781  T
Q  178 tatttaatgtg 188  Q
    |||||||||||    
T  19098780 tatttaatgtg 19098770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 14055651 - 14055809
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||  ||||  ||| ||| ||||| || ||||||| ||| |||||||| | ||| |||||| |||| | ||||  | ||  |||    
T  14055651 gtgtgaatatgatgtgctgttgtgacatgtaaaatgaagatatcatacatagtaactgttgagaatcatgagatagtggagactatattattttggtatt 14055750  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||||||||| || |||| | ||||||||||| || || ||||||||||||| ||||    
T  14055751 tatttaatgtgcatgcttttccatattattatgttattgctggatttctcaccccttat 14055809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 130288 - 130123
Alignment:
Q  71 tgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccta 170  Q
    |||||| |||| || |||||||| ||| ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| |     
T  130288 tgtttaagtgtaaatatgatgtgctgctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttt 130189  T
Q  171 tgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||| ||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||| ||||    
T  130188 tgatatttatttaatgtgcatgctttttcctattattttgttatggcaggatttctcaccccttat 130123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 14980889 - 14981044
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| |||| |||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||| |||    
T  14980889 gtgtgaatatgatgtgctgctgtgacttgtaaaatgaagagattatacatagtaaatgttgagaatgatgagatagtggagactatattcttttgatatt 14980988  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctt 233  Q
    |||||||||||| || ||||  |||||||| | | |||||||||||||||||||||    
T  14980989 tatttaatgtgcatgcttttctctattattttattatggcaggatttctcaccctt 14981044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 8404386 - 8404538
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| ||||| ||||||| |||||||||||||||| ||| || ||||||||||| |||||| ||||   ||||| | ||| |||    
T  8404386 gtgtgaagatgatgtgctgctgtgatatgtgaaatgaagagattatacatagtaactgctgagagtgatgagatagtggagaccatattcttttgatatt 8404485  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||||||| ||  |||||||| || ||||| ||||| |||||||||||||    
T  8404486 tatttaatgtgcatg-cttttcctactaatatgttatggctggatttctcaccc 8404538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 977351 - 977222
Alignment:
Q  8 gatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgt 107  Q
    |||||||||||||||| |||| || ||||||||    |||||||| |||||||| | | ||||| ||||||||||||||||||||||||  ||||  |||    
T  977351 gatattttgtaatttgatgacgtcatgaatgat----gtgtaattgttgatgttaaagttaattatttatgtgtgaaaatgatgtgttgttgtgacatgt 977256  T
Q  108 gaaaagaagagattatacataataattgttgaga 141  Q
    |||| |||||||||||||||||| | ||||||||    
T  977255 gaaatgaagagattatacataatgactgttgaga 977222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 10907387 - 10907549
Alignment:
Q  73 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatg 172  Q
    |||| |||||||||||||||| |   ||||| | ||||||||||||||||| || ||||| |||||||||||| |  || || |||||| ||||  | ||    
T  10907387 tttaagtgtgaaaatgatgtgctctagtgatctatgaaaagaagagattatgcaaaataactgttgagagtgaagatattgtggagattatattatt-tg 10907485  T
Q  173 aaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    | ||||||||||| |||||| |||| |||||||| |||| ||||||||||||||||||| ||||    
T  10907486 atatttatttaatatgcgtgcttttccctattatcatgttatggcaggatttctcaccccttat 10907549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 10641929 - 10642083
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||||||||| ||  |||||||||||||| |||||||||||    |||| |||||| ||||| |  || || |||||| ||||  | ||| |||    
T  10641929 gtgtgaaaatgatgtgctgtagtgatttgtgaaaataagagattata----ataactgttgaaagtgaagatatggtggagattatattattttgatatt 10642024  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||||| ||||||||||| ||||||||||||| ||| || |||||||| ||| ||||    
T  10642025 tatttaatatgcgtgtttttccctattattatgttatgacaagatttctcgccccttat 10642083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 9190392 - 9190274
Alignment:
Q  113 gaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgtt-ttttcctattattatgt 211  Q
    ||||| |||||| ||  ||| ||||||| |||| | |||| ||||||||  |||||| ||| |||||||||| ||||||||| |||||||| || |||||    
T  9190392 gaagatattatatatggtaactgttgagggtgaagagataatagagattacattcct-tgatatttatttaacgtgcgtgtttttttcctaataatatgt 9190294  T
Q  212 catggcaggatttctcaccc 231  Q
     || || |||||||||||||    
T  9190293 tattgctggatttctcaccc 9190274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 23661443 - 23661580
Alignment:
Q  99 gtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgtttttt 198  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||| |  || ||| ||||| ||||  | ||| ||||||||||| |||||  ||||     
T  23661443 gtgatatgtgaaaagaagagattatgcataataactgttgagagtgaagatatggtaaagattatattattttgatatttatttaatatgcgttcttttc 23661542  T
Q  199 cctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  23661543 cctattattatgttatggcaggatttctcaccccttat 23661580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 230
Target Start/End: Complemental strand, 24786223 - 24786072
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||||||||||||| |  |||| |||||||||||||||||||||||||| || |||||||||||| |  || || |||||| ||||  | ||| |||    
T  24786223 gtgtgaaaatgatgtgt-gtagtgaattgtgaaaagaagagattatacataaaaactgttgagagtgaagatatggtggagattatattattctgatatt 24786125  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcacc 230  Q
    ||||| || || |||||||| || |||||||||| ||||||||||||||||||    
T  24786124 tatttgatatgtgtgtttttcccaattattatgttatggcaggatttctcacc 24786072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 44587012 - 44587170
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||  |||||||    ||||||||||||  || || |||||| ||||  | ||| | |    
T  44587012 gtgtgaaaatgatgtgctgtagtgatttgtgaaaagaagagattaagcataatacccattgagagtgatgatatggtggagattatattattttgataat 44587111  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||||| || |||||||| ||||||||| ||| |||||||||||| |||||| ||||    
T  44587112 tatttaatatgtgtgtttttccctattattttgttatggcaggatttatcaccccttat 44587170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 13361369 - 13361209
Alignment:
Q  71 tgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccta 170  Q
    ||||||||| | |||||||||||||| |||||| |||||| |||||| |||| ||| ||| ||| |||||| ||||| ||||||||||||| ||||  |     
T  13361369 tgtttatgtttcaaaatgatgtgttgtcgtgatatgtgaacagaagatattacacacaatgattcttgaga-tgatgagatagtagagattatatttttg 13361271  T
Q  171 tgaaatttattt----aatgtgcgtgttttttcctattattatgtcatggcaggatttctcacc 230  Q
    ||| ||||||||    ||| ||||||  ||||||||||||||||| ||   |||||||||||||    
T  13361270 tgatatttatttattaaatatgcgtg--ttttcctattattatgttattttaggatttctcacc 13361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 32252683 - 32252823
Alignment:
Q  70 ttgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcct 169  Q
    ||||||| |||||||||| ||||| ||  ||| | ||||||| |||||||||||| ||  | | ||||||| |||| | ||| ||||||||| |||||||    
T  32252683 ttgtttaagtgtgaaaatcatgtgctgttgtgttatgtgaaatgaagagattatatatggtgactgttgagggtgaagagatggtagagattatattcct 32252782  T
Q  170 atgaaatttatttaatgtgcgtgttttttcctattattatgt 211  Q
     ||| |||||||||||||| ||| ||||||||| || |||||    
T  32252783 -tgatatttatttaatgtgtgtgctttttcctaataatatgt 32252823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 27470740 - 27470884
Alignment:
Q  84 aaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaat----tta 179  Q
    |||||| |||||||| |||| ||||||  |||||||||||||||||| ||||||||||       ||||||||||||| ||||| | ||| ||    |||    
T  27470740 aaatgaggtgttgccatgatatgtgaaccgaagagattatacataatgattgttgaga------tgatagtagagattatattcttgtgatatttactta 27470833  T
Q  180 tttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcacc 230  Q
    | |||| |||||| |||| | |||| |||||| ||||||||||||||||||    
T  27470834 tctaatatgcgtgcttttccttatttttatgttatggcaggatttctcacc 27470884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 16858332 - 16858172
Alignment:
Q  73 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagaga---ttatacataataattgttgagagtgatgcgatagtagagattgtattcct 169  Q
    ||||||||||||||||||||||||  || || || |||| |||||||   |||||||||||  |||||||||   ||| ||||||||||||| ||||| |    
T  16858332 tttatgtgtgaaaatgatgtgttgtggtcatatgagaaatgaagagattattatacataatggttgttgaga-caatgtgatagtagagattatattctt 16858234  T
Q  170 atgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
      ||   ||||| ||||||||||||| | |||||  |||||| || || |||||||||||||    
T  16858233 cggatgcttattaaatgtgcgtgtttatccctatgtttatgttatagctggatttctcaccc 16858172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 12070 - 11917
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||||||||||||  ||||| ||||||||||||| ||||| ||||||||  |||| |||||| |  || || |||||| | ||  | ||| |||    
T  12070 gtgtgaaaatgatgtgttgtagtgatctgtgaaaagaagatattatgcataataaccgttgggagtgaagatatggtggagattattttattttgatatt 11971  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||    
T  11970 tatttaatatgcgtgtttttccctattcttatgttatggtaggatttctcaccc 11917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 21765 - 21918
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| |||| |||| ||  |||||||||||||||| ||| |||||||| |||||  ||||| |||| | ||||| | ||| ||     
T  21765 gtgtgaatatgatgtgctgctgtgacttgtaaactgaagagattatacatagtaactgttgagactgatgaaatagtggagactatattcttttgatatg 21864  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||||||| || |||| ||||||||| | | |||||||||||||||||||    
T  21865 tatttaatgtgcatgcttttccctattatttttttatggcaggatttctcaccc 21918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 28885 - 29041
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||  ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| |  |||| | ||| |||    
T  28885 gtgtgaatatgatgtgctgttgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagact--attcttttgatatt 28982  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    |||||||||||| || |||| ||||||||| ||| |||| |||||||||||||| ||||    
T  28983 tatttaatgtgcatgcttttccctattattttgttatggtaggatttctcaccccttat 29041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 13743 - 13591
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    ||||||| |||||||| ||| ||||| ||||| | |||||||||||||||| ||| || |||||| |||| |||||| |||| | ||||| | | | |||    
T  13743 gtgtgaatatgatgtgctgctgtgatatgtgatatgaagagattatacatagtaactgctgagagagatgagatagtggagactatattctttttatatt 13644  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
    |||||||||||| ||  |||||||| || ||||| ||||| |||||||||||||    
T  13643 tatttaatgtgcatg-cttttcctaataatatgttatggctggatttctcaccc 13591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 5459 - 5611
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 177  Q
    |||||||||||||| | ||  ||||| ||||||  ||||||| |||| ||| |||||||||||||||  | |||  | | ||||  ||||||  || |||    
T  5459 gtgtgaaaatgatgagatggtgtgatatgtgaattgaagagaatatatatagtaattgttgagagtgtagtgatgatggtgatttcattccttcgatatt 5558  T
Q  178 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 231  Q
     |||||||||| || ||||| ||||||||||||| || ||||||||||||||||    
T  5559 -atttaatgtgtgtatttttccctattattatgttatagcaggatttctcaccc 5611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 946 - 879
Alignment:
Q  78 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 145  Q
    |||||||||||||||| |   |||||||||||||||||||||||||  ||||||| | ||||||||||    
T  946 gtgtgaaaatgatgtgctttagtgatttgtgaaaagaagagattatgaataataactattgagagtga 879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 24505560 - 24505499
Alignment:
Q  175 atttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 236  Q
    ||||||||||| ||| || |||||||||||||||||| ||   |||||||||||||| ||||    
T  24505560 atttatttaatatgcatgctttttcctattattatgttattataggatttctcaccccttat 24505499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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