View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_low_9 (Length: 547)
Name: NF0750_low_9
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 52023510 - 52023270
Alignment:
| Q |
13 |
aatatagttgaataatgtgtgagggtggtgcgtgactcaaactcaacagcggttgagctgaaaatcttagaaaacttcttattcattttagaatttgagg |
112 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52023510 |
aatatagttgaataatgtgtgagggtggt-cacgactcaaactcaacagcggttgagttgaaaatcttagaaaacttcttattcattttagaatttgagt |
52023412 |
T |
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| Q |
113 |
tgaacattaaactcaactaaactagattattgtagagggaaata-tgtctcccacttatacaaacatattttcaaatcttatttgatctaatataaaact |
211 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52023411 |
tgaacattaaactcaactaaactagatt---gtagagggaaataatgtcttccacttatacaaacatattttcaaatcttatttgatctaatataaaact |
52023315 |
T |
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| Q |
212 |
atcaccaaaaataatattaaaaactttactggaacacatggattg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52023314 |
atcaccaaaaataatattaaaaactttactggaacacatggattg |
52023270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 325 - 451
Target Start/End: Complemental strand, 52023215 - 52023086
Alignment:
| Q |
325 |
tgatcgacacatgggataccgtctgaatcccaaaattagaacatgtattccaatatgtttgagtagccattgtt---ttgtccatggggagtgagaccca |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
52023215 |
tgatcgacacatgggataccgtctgaatcccaaaattagaacatgtattccaatatgtttgagtagccattgttttgttgtctatggggagtgagaccca |
52023116 |
T |
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| Q |
422 |
ccgtaacaaccaccctatctcattaattgt |
451 |
Q |
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| T |
52023115 |
ccgtaacaaccaccctatctcatcaattgt |
52023086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 518
Target Start/End: Complemental strand, 52023050 - 52023021
Alignment:
| Q |
489 |
gggatggagggaagaaggggagtatgataa |
518 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52023050 |
gggatggagggaagaaggggagtatgataa |
52023021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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