View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0751_low_1 (Length: 782)
Name: NF0751_low_1
Description: NF0751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0751_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 379 - 699
Target Start/End: Complemental strand, 45301604 - 45301283
Alignment:
| Q |
379 |
aattactttgaacattgcaactaaatgcttacaacttatgcagaaataatacttattaaaaaatgatataataatttgtattaagatcttaaatatacta |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
45301604 |
aattactttgaacattgcaactaaatgcttacaacttatgcagaaataatacttattaaaaaatgaaataataatttgtattaagatcttaaacatacta |
45301505 |
T |
|
| Q |
479 |
acatgatatgtaacnnnnnnnnnnntacaaacatgataccaacaaagtataatctggttcttcgaggattggttccaacatgttcttggagtgtgacttt |
578 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45301504 |
acatgatatgtaacaaaaaaaaaa-tacaaacatgataccaacaaagtataatctggttcttcgaggattggttccaacatgttcttggagtgtgacttt |
45301406 |
T |
|
| Q |
579 |
tacagcaatcgttggcatctaattcttggttggtggtgatttacactgctcaacctgacggtatcggt--tcacgcgcttcagtttggtggctcacatgt |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45301405 |
tacagcaatcgttggcatctaattcttggttggtggtgatttacactgctcaacctgacggtatcggttctcacgcgcttcagtttggtggctcacatgt |
45301306 |
T |
|
| Q |
677 |
cttcaggaaggaaattcgtggtt |
699 |
Q |
| |
|
||| ||||||||||| ||||||| |
|
|
| T |
45301305 |
cttaaggaaggaaatccgtggtt |
45301283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 102 - 267
Target Start/End: Complemental strand, 45301880 - 45301715
Alignment:
| Q |
102 |
atctagaccaaataagagcatttggtataattaaaat-attaaaatgaagtgatatagataccttagataagggatagcaaagcatgctaactcacaccg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
45301880 |
atctagaccaaataagagcatttggtataattaaaattattaaaatgaagtgatatagataccttagataagggatagctaaacatgcta-ctcacaccg |
45301782 |
T |
|
| Q |
201 |
ccactaacacgcctaacacagtgtgaggcaacaagaggtgatgggttgaaaatctcactccaatcac |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45301781 |
ccactaacacgcctaacacagtgtgaggcaactagaggtgatgggttgaaaatctcactccaatcac |
45301715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2947 times since January 2019
Visitors: 4805