View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0751_low_2 (Length: 553)
Name: NF0751_low_2
Description: NF0751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0751_low_2 |
 | |
|
| [»] scaffold0427 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 2 - 524
Target Start/End: Complemental strand, 53731517 - 53730994
Alignment:
| Q |
2 |
cacactaataactcacaattttcttcttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgttac |
101 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53731517 |
cacactaataactcctaattttgttcttcttctcctccaattttctaattcctgaataaacatctacctgataaacttatagttcttgctgttctgttac |
53731418 |
T |
|
| Q |
102 |
ctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatac |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53731417 |
ctccatcactaggaaaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatac |
53731318 |
T |
|
| Q |
202 |
taacgtgattttacag-tttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggtt |
300 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
53731317 |
taacgtgattttacaggtttcctttctagtttgttttgcagaatcaggttccgtgttatttgaagttgcggtggctgcggtgttcttcaaagttgcggtt |
53731218 |
T |
|
| Q |
301 |
gctgtgttattacttaaagttgtggtgttgcagttgctgtttacacataagctacaacaatcttggaatttatcctttataattgtgacctcaagttaag |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53731217 |
gctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaacaatcttggaatttatcctttataattgtgaccgcaagttaat |
53731118 |
T |
|
| Q |
401 |
gtttgggtgattggaaaattagtacagaccttctacaaggtacacaactttcattcaacaattgatttccaaaataaattgccgtaacttctattgttat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53731117 |
gtttgggtgattggaaaattagtacagaccttctacaaggtacacaattttcattcaacaattgatttccaaaataaattgccgtaacttctattgttat |
53731018 |
T |
|
| Q |
501 |
atattggttttttgaattagaaac |
524 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
53731017 |
atattggttttttgaattagaaac |
53730994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 53727035 - 53726677
Alignment:
| Q |
2 |
cacactaataactcacaattttcttcttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgttac |
101 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53727035 |
cacactaataactcctaattttgttcttcttctcctccaattttctaattcctgaataaacatctacctgataaacttatagttcttgctgttctgttac |
53726936 |
T |
|
| Q |
102 |
ctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53726935 |
ctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatac |
53726836 |
T |
|
| Q |
202 |
taacgtgattttaca-gtttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggtt |
300 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| ||||| |||| |
|
|
| T |
53726835 |
taacgtaattttacaggtttaatttctagtttgttttgcagaatcaggttccgtgttatttgaagttgcggtggttgcggtgttcttcaaagttgcggtt |
53726736 |
T |
|
| Q |
301 |
gctgtgttattacttaaagttgtggtgttgcagttgctgtttacacataagctacaaca |
359 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
53726735 |
gctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaaca |
53726677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 42871942 - 42872065
Alignment:
| Q |
84 |
ttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt |
183 |
Q |
| |
|
|||||| ||||||||||||||||| |||| |||||| || || || || ||| ||| ||||| ||| |||||| |||||||||||| | |||||||||| |
|
|
| T |
42871942 |
ttcttgttgttctgttacctccataactacgagaagaacatgttgaattctgaggaatttgcacactctgaggcagataaattccaatggcagtcttcgt |
42872041 |
T |
|
| Q |
184 |
gacgcctcaggttaatactaacgt |
207 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42872042 |
gacgcctcaggttaatactaacgt |
42872065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 28 - 522
Target Start/End: Original strand, 14058879 - 14059378
Alignment:
| Q |
28 |
ttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgct |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14058879 |
ttcttctcctccaattttctaattcttgaataaacatctacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgct |
14058978 |
T |
|
| Q |
128 |
gtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtg----attttacag-tttac |
222 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
14058979 |
gtatcctagggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgcattcaattttgcaggtttac |
14059078 |
T |
|
| Q |
223 |
tttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggttgctgtgttattacttaaagttg |
322 |
Q |
| |
|
||| |||||| |||||||||||| |||||| ||||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
14059079 |
tttgtagtttgttttgcagaatctggttcgttgttatttgaagttgcgatgactgcgatgttattcgaagttgcggttgctgcgttattacttaaagttg |
14059178 |
T |
|
| Q |
323 |
tggtgttgcagttgctgtttacacataagctacaacaatcttggaatttatcctttataattgtgacctcaagttaaggtttgggtgattggaaaattag |
422 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14059179 |
cggtgttgtggttgctgtttacacatcaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaaggtttgggtgattggaaaattag |
14059278 |
T |
|
| Q |
423 |
tacagaccttctacaaggtacacaactttcattcaacaattgatttccaaaataaattgccgt-aacttctat-tgttatatattggttttttgaattag |
520 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||| || | ||| |||||| |||| ||| ||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
14059279 |
tgcagaccttctacaaggtacagaactttcattcaataaataattgacaaaat--attgtcgtgaacttctatctgttatatatttgtcttttgaattag |
14059376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 23544489 - 23544850
Alignment:
| Q |
1 |
ccacactaataactcacaattttcttcttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgtta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23544489 |
ccacactaataactcacaattttgttcttcttctcccccaattttctaattcctgaataaacatctacttgataaacttatagttcttgctgttctgtta |
23544588 |
T |
|
| Q |
101 |
cctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaata |
200 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23544589 |
cctccatcactaagagaaggatctgctgtatcctggggagtttgcgcacattgaggtggataaattccaaggacagtcttcgtgacgcctcaggttaata |
23544688 |
T |
|
| Q |
201 |
ctaacgtgattttaca-gtttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggt |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||| ||| |
|
|
| T |
23544689 |
ctaacgtgattttacaggtttactttctagtttgttttgcagaatcaggttcggtgttatttgaagttgtggtggctggggtgttgttcgaagttgcggt |
23544788 |
T |
|
| Q |
300 |
tgctgtgttattacttaaagttgtggtgttgcagttgctgtttacacataagctacaacaat |
361 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
23544789 |
tgctgcgttattacctaaagttgcggtgttgcggttgatgtttacacataaggtacaacaat |
23544850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 22462290 - 22462508
Alignment:
| Q |
57 |
ataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgagg |
156 |
Q |
| |
|
|||||||| | | ||||||| ||||| |||||| |||| |||||||||||| | ||||||||||||||| || |||||||||||||| |||||| ||||| |
|
|
| T |
22462290 |
ataaacatctgcttgataaatttataattcttgatgttttgttacctccataattaggagaaggacctgttgaatcctggggagtttccgcacactgagg |
22462389 |
T |
|
| Q |
157 |
cggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt----gattttac-agtttactttctagtttattttgcagaatcaggttc |
251 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||| ||| | ||| |||||| ||||| |
|
|
| T |
22462390 |
cggataaattccaaagacagtcctcgtgacgcctcatgttaatactaacgtattcaattttacaagtttactttctggttcgtcttgtagaatctggttc |
22462489 |
T |
|
| Q |
252 |
ggtgttatttgaagttgcg |
270 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22462490 |
attgttatttgaagttgcg |
22462508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 524
Target Start/End: Original strand, 14059395 - 14059462
Alignment:
| Q |
457 |
aacaattgatttccaaaataaattgccgtaacttctattgttatatattggttttttgaattagaaac |
524 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
14059395 |
aacaattgatttagaaaataaattgccgtaacttatattgttatatattgaccttttgaactagaaac |
14059462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 28 - 481
Target Start/End: Complemental strand, 7505276 - 7504820
Alignment:
| Q |
28 |
ttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgct |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7505276 |
ttcttctcctccaattttctaattcatgaataaacatctacttgataaactgatagttcttgctgttctgttacctccatcactaggagaaggatctgct |
7505177 |
T |
|
| Q |
128 |
gtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtg----attttacag-tttac |
222 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
7505176 |
gtatcctgcg-agtttgcgcatattgaggcggataaatttcaaggacagtcttcgtgacacctcaggttaatactaacgcattcaattttgcaggtttac |
7505078 |
T |
|
| Q |
223 |
tttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggttgctgtgttattacttaaagttg |
322 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
7505077 |
tttctagtttgttttgcagaatctggttcggtgttatttgaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgttattacttaaagttg |
7504978 |
T |
|
| Q |
323 |
tggtgttgcagttgctgtttacacataagctacaacaatcttggaatttatcctttataattgtgacctcaagttaaggtttgggtgattggaaaattag |
422 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||||||| ||||||||||||||||| ||||||| ||| || ||||||| |||||||||||||||| |
|
|
| T |
7504977 |
cggtgttatggttgctgtttacacatcaggtacaacaatcttagaatttatcctttataaatgtgaccgcaaatttaggtttgagtgattggaaaattag |
7504878 |
T |
|
| Q |
423 |
tacagaccttctacaaggtacacaactttcattcaacaattgatttccaaaataaattg |
481 |
Q |
| |
|
| || ||||||||||||||||||||||| ||||||| |||| ||| |||| ||||||| |
|
|
| T |
7504877 |
tgca-accttctacaaggtacacaacttccattcaaaaattaattcacaaactaaattg |
7504820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 28 - 367
Target Start/End: Complemental strand, 26973635 - 26973292
Alignment:
| Q |
28 |
ttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgct |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26973635 |
ttcttctcctccaattttctaattcctgaataaacatctacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgtt |
26973536 |
T |
|
| Q |
128 |
gtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacg----tgattttaca-gtttac |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
26973535 |
gtatcctggaaagtttgcgcacattgaggcggataaa-tccaaggacagtctttgtgacgcctcaggttaatactaacgcattcaattttgcaggtttac |
26973437 |
T |
|
| Q |
223 |
tttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggttgctgtgttattacttaaagttg |
322 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
26973436 |
tttctagtttgttttgcagaatctggttcggtgttatttgaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgttattacttaaagttg |
26973337 |
T |
|
| Q |
323 |
tggtgttgcagttgctgtttacacataagctacaacaatcttgga |
367 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||| ||||||||| |
|
|
| T |
26973336 |
cggtgttgcggttgctgtttacacatcaggtacaagaatcttgga |
26973292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 28 - 359
Target Start/End: Complemental strand, 26969108 - 26968772
Alignment:
| Q |
28 |
ttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgct |
127 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26969108 |
ttcttctcctccaatcttctaattcctgaataaacatctacctgataaacttatagttcttgatgttctgttacctccatcattaggagaaggacctgct |
26969009 |
T |
|
| Q |
128 |
gtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaac----gtgattttaca-gtttac |
222 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
26969008 |
gtatcctggggattttgcgtacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacacattcaattttgcaggtttac |
26968909 |
T |
|
| Q |
223 |
tttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggttgctgtgttattacttaaagttg |
322 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
26968908 |
tttctagtttgttttgcagaatatggttcggtgttatttgaagttccggtggctgctgtgttattcaaagttgcggttgctgcattgttacttaaagttg |
26968809 |
T |
|
| Q |
323 |
tggtgttgcagttgctgtttacacataagctacaaca |
359 |
Q |
| |
|
|||||||| |||||||||||| ||| || ||||||| |
|
|
| T |
26968808 |
cggtgttgcggttgctgtttactcatcaggtacaaca |
26968772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 392 - 463
Target Start/End: Complemental strand, 26973291 - 26973220
Alignment:
| Q |
392 |
caagttaaggtttgggtgattggaaaattagtacagaccttctacaaggtacacaactttcattcaacaatt |
463 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26973291 |
caagttaaggtttggctgattggaaaattagtgcagaccttctacaaggtacacaactttcattcaataatt |
26973220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 19229867 - 19229545
Alignment:
| Q |
1 |
ccacactaataactcacaattttcttcttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgtta |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19229867 |
ccacactaataactcacaacttggttcttcttctcctccaattttctaattcctgaataaacatctacctgataaacttatagttcttgctgttctgtta |
19229768 |
T |
|
| Q |
101 |
cctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaata |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19229767 |
cctccatcactaggagaaggacctgttgtatcttggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaata |
19229668 |
T |
|
| Q |
201 |
ctaacgtgattttaca-gtttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggt |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||| ||| |
|
|
| T |
19229667 |
ctaacgtgattttacaggtttactttctagtttgttttgcagaatctggttcggtgttatttgaagttgcggtggctgcagtgttcttcgaagttgcggt |
19229568 |
T |
|
| Q |
300 |
tgctgtgttattacttaaagttg |
322 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
19229567 |
tgctgcgttattacttaaagttg |
19229545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 1e-98; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 58 - 359
Target Start/End: Original strand, 8263346 - 8263647
Alignment:
| Q |
58 |
taaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggc |
157 |
Q |
| |
|
||||||| | ||||||||| |||| ||||||||||||||| ||| |||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
8263346 |
taaacatatgcctgataaaattatcattcttgctgttctgtaaccaccataacttggagaaggacctgttgaatcctggggaatttgcgcacattgaggc |
8263445 |
T |
|
| Q |
158 |
ggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtgattttaca-gtttactttctagtttattttgcagaatcaggttcggtgt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
8263446 |
ggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtgattttacatgtttactttctagtttgttttgcagaatctggttcggtgt |
8263545 |
T |
|
| Q |
257 |
tatttgaagttgcggtggctgcggtgttattcatagttgtggttgctgtgttattacttaaagttgtggtgttgcagttgctgtttacacataagctaca |
356 |
Q |
| |
|
||||||||||||||||| | ||||| |||||| ||||| |||||||| ||||||||||||||||| | |||||| |||| ||||||||||| || |||| |
|
|
| T |
8263546 |
tatttgaagttgcggtgaccgcggt-ttattcgaagttgcggttgctgcgttattacttaaagttgcgatgttgcggttgttgtttacacatcaggtaca |
8263644 |
T |
|
| Q |
357 |
aca |
359 |
Q |
| |
|
||| |
|
|
| T |
8263645 |
aca |
8263647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 73 - 406
Target Start/End: Complemental strand, 38643890 - 38643563
Alignment:
| Q |
73 |
taaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaagg |
172 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38643890 |
taaacttatagttcttgttgttctgttacctccatcattaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaatttcaagg |
38643791 |
T |
|
| Q |
173 |
acagtcttcgtgacgcctcaggttaatactaacg----tgattttaca-gtttactttctagtttattttgcagaatcaggttcggtgttatttgaagtt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
38643790 |
acagtcttcgtgacgcctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatctggttcggtgttatttgaagt- |
38643692 |
T |
|
| Q |
268 |
gcggtggctgcggtgttattcatagttgtggttgctgtgttattacttaaagttgtggtgttgcagttgctgtttacacataagctacaacaatcttgga |
367 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||| |||||| ||| ||||||||||||||| |
|
|
| T |
38643691 |
--------tgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgcggtttacgcat---gtacaacaatcttgga |
38643603 |
T |
|
| Q |
368 |
atttatcc-tttataattgtgacctcaagttaaggtttgg |
406 |
Q |
| |
|
|||||||| |||| || ||||||| ||||||||| ||||| |
|
|
| T |
38643602 |
atttatccttttaaaactgtgaccgcaagttaagatttgg |
38643563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 229 - 522
Target Start/End: Original strand, 5659718 - 5660011
Alignment:
| Q |
229 |
gtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggttgctgtgttattacttaaagttgtggtgt |
328 |
Q |
| |
|
|||| |||||||||| | |||||| |||| || ||||||| ||||||| || ||||||| ||||| |||||| |||||||| || |||||| ||||| |
|
|
| T |
5659718 |
gtttgttttgcagaaactggttcgttgtttttcgaagttggggtggctacgttgttatttgaagttgcggttgcc-tgttattatttgaagttgcggtgt |
5659816 |
T |
|
| Q |
329 |
tgcagttgctgtttacacataagctacaacaatcttggaatttatcctttataattgtgacctcaagttaaggtttgggtgattggaaaattagtacaga |
428 |
Q |
| |
|
||| |||||||||||| ||| || |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5659817 |
tgcggttgctgtttacgcatcaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaaggtttgggtgattggaaaattagtacaga |
5659916 |
T |
|
| Q |
429 |
ccttctacaaggtacacaactttcattcaacaattgatttccaaaataaattgccgt-aacttcta-ttgttatatattggttttttgaattagaa |
522 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| || ||||| | |||||||| |||||||| |||||||||||| | ||| |||| ||||| |
|
|
| T |
5659917 |
ccttctacaaggtacacgactttcattcaataattagttgacaaaa-atattgccgtgaacttctatttgttatatatttgctttatgaaatagaa |
5660011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 32791725 - 32791863
Alignment:
| Q |
28 |
ttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgct |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
32791725 |
ttcttctccttcaattttctaattcctgaataaacatctacctgataaatttatagttcttgttgttctgttacctccatcactaggagaaggacctact |
32791824 |
T |
|
| Q |
128 |
gtatcctggggagtttgcgcacattgaggcggataaatt |
166 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
32791825 |
gtatcgtggggagtttgcgcatattgagacggataaatt |
32791863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 228 - 412
Target Start/End: Complemental strand, 21419118 - 21418939
Alignment:
| Q |
228 |
agtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggttgctgtgttattacttaaagttgtggtg |
327 |
Q |
| |
|
||||| |||||| ||||| |||||| |||||||||||||||||| ||||||| ||||||| ||||||| ||| || ||||||| |||||||||||||| |
|
|
| T |
21419118 |
agtttgttttgcggaatctggttcgttgttatttgaagttgcggcggctgcgttgttattggaagttgtgattgttgcgttattatttaaagttgtggtg |
21419019 |
T |
|
| Q |
328 |
ttgcagttgctgtttacacataagctacaacaatcttggaatttatcctttataattgtgacctcaagttaaggtttgggtgatt |
412 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||| ||||||| ||| || ||||||| ||| ||||| ||||||||||| |
|
|
| T |
21419018 |
ttgcggttgctgtttacac-----gtgcaacaatcttgaaatttattgattaaaactgtgaccgcaaattaagatttgggtgatt |
21418939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 32791871 - 32791926
Alignment:
| Q |
252 |
ggtgttatttgaagttgcggtggctgcggtgttattcatagttgtggttgctgtgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
32791871 |
ggtgttatttgaagttgcggtggctgcagtgttattcgaagttgcggttgctgtgt |
32791926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 84 - 360
Target Start/End: Complemental strand, 19033897 - 19033617
Alignment:
| Q |
84 |
ttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt |
183 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19033897 |
ttcttgctgttatgttacctccatcactaggagaaggacctgttgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt |
19033798 |
T |
|
| Q |
184 |
gacgcctcaggttaatactaacgtg----attttaca-gtttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgc |
278 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || ||||||| |||||||| |||||||||||| |||||| ||||| | ||||||||||||||||| |
|
|
| T |
19033797 |
gacgcctcaggttaatactaacgtgttcaattttgcaggtttactgtctagtttgttttgcagaatctggttcgttgttactcgaagttgcggtggctgc |
19033698 |
T |
|
| Q |
279 |
ggtgttattcatagttgtggttgctgtgttattacttaaagttgtggtgttgcagttgctgtttacacataagctacaacaa |
360 |
Q |
| |
|
| ||||||| ||||| |||||| | | ||||| |||||||||| ||||||| ||| |||||||| ||| || |||||||| |
|
|
| T |
19033697 |
gttgttatttgaagttgcggttgccg-gatattatttaaagttgtcgtgttgcggttactgtttacgcatcaggtacaacaa |
19033617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 84 - 272
Target Start/End: Original strand, 38968437 - 38968629
Alignment:
| Q |
84 |
ttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt |
183 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||||| | ||| || ||||| | ||||| |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
38968437 |
ttcttgttgctctgttacctccataactaagagaagtatctgttgaatcctagatagtttacgcacactgaggcggataaattttaaggacagtcttcgt |
38968536 |
T |
|
| Q |
184 |
gacgcctcaggttaatactaacgtg---attttaca-gtttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggt |
272 |
Q |
| |
|
|||||||||||||||||||||| || | ||| || ||||||||||||||| || |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38968537 |
gacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatccggttcgttgttatttgaagttgcggt |
38968629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 28830902 - 28830751
Alignment:
| Q |
57 |
ataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgagg |
156 |
Q |
| |
|
|||||||||| |||||||| || | ||||| ||||||||||||||||| ||||||||||| | | | || || |||| |||||||| |||| |||| |
|
|
| T |
28830902 |
ataaacatttgtctgataaatttgtgattcttattgttctgttacctccataactaggagaagaatcggttgaattatgggaagtttgcgtacatggagg |
28830803 |
T |
|
| Q |
157 |
cggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtg |
208 |
Q |
| |
|
|||||||||||||| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
28830802 |
tggataaattccaagaacagtcctcatgacgccttaggttaatactaacgtg |
28830751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 7e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 47204808 - 47205011
Alignment:
| Q |
75 |
aacttatagttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggac |
174 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47204808 |
aacttataattcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctgggaagtttgcgcacattgaggcggataaattctaaggac |
47204907 |
T |
|
| Q |
175 |
agtcttcgtgacgcctcaggttaatactaacgt----gattttacag-tttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||| | |||| |||||||||||||||| |
|
|
| T |
47204908 |
agtcttcgtgacgcctcaggttaatactaacgtattcaattttgcagatttactttctagtttgttttgcagaatctgattcgatgttatttgaagttgc |
47205007 |
T |
|
| Q |
270 |
ggtg |
273 |
Q |
| |
|
|||| |
|
|
| T |
47205008 |
ggtg |
47205011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 47204674 - 47204809
Alignment:
| Q |
28 |
ttcttctcctccaattttctaattcctgaataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgct |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47204674 |
ttcttctcctccaattttctaattcctgaataaacatctacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgtt |
47204773 |
T |
|
| Q |
128 |
gtatcctggggagtttgcgcacattgaggcggataa |
163 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
47204774 |
gtaccctggagagtttgcgcacattgaggcggataa |
47204809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 8360137 - 8360269
Alignment:
| Q |
72 |
ataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaag |
171 |
Q |
| |
|
||||| ||||| |||||| |||| |||||||| ||| ||||||||||| || || || ||||||| || ||||| || |||| ||| ||||||| ||| |
|
|
| T |
8360137 |
ataaatttataattcttggtgttgtgttaccttcataactaggagaagaacttgttgaatcctggagattttgcacattttgatgcgaataaattttaag |
8360236 |
T |
|
| Q |
172 |
gacagtcttcgtgacgcctcaggttaatactaa |
204 |
Q |
| |
|
|||| ||||| ||||| |||||| |||||||| |
|
|
| T |
8360237 |
gacaatcttcatgacgattcaggtaaatactaa |
8360269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 8353794 - 8353844
Alignment:
| Q |
68 |
cctgataaacttatagttcttgctgttctgttacctccatcactaggagaa |
118 |
Q |
| |
|
||||||||| ||||| |||||| |||| |||||||||||| |||||||||| |
|
|
| T |
8353794 |
cctgataaatttataattcttgttgttatgttacctccataactaggagaa |
8353844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 28 - 272
Target Start/End: Complemental strand, 3628068 - 3627824
Alignment:
| Q |
28 |
ttcttctcctccaattttctaattcctga-ataaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgc |
126 |
Q |
| |
|
|||||||| ||||||||| | ||||||| |||||||| | ||||||||| |||| ||||||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
3628068 |
ttcttctcttccaatttt--acttcctgagataaacatctgcctgataaaattatcattcttgctgttctgtaacctccataacttggagaaggacctgt |
3627971 |
T |
|
| Q |
127 |
tgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtgattttaca-gtttacttt |
225 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
3627970 |
tgaatcctggagagtttgcgcacattgaagcggataaattccaaggacagtattcctgacgcctcaagttaatactaacgtgattttacaggtttacttt |
3627871 |
T |
|
| Q |
226 |
ctagtttattttgcagaatcaggttcggtgttatttgaagttgcggt |
272 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
3627870 |
ctagtttgttttgcagaatttggttcgttgttatttgaagttgcggt |
3627824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 84 - 359
Target Start/End: Complemental strand, 16085340 - 16085061
Alignment:
| Q |
84 |
ttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt |
183 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16085340 |
ttcttgctgttttgttacctccatcactaggagaaggacctgctgtgtcctggggagtttgcgtacattgaggcggataaattccaaggacagtcttcgt |
16085241 |
T |
|
| Q |
184 |
gacgcctcaggttaatactaacgtg----attttaca-gtttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgc |
278 |
Q |
| |
|
||||||| ||||||||||||||||| || || || |||||||||||||||| |||||||||||| |||| | ||||| | ||| ||||||||||||| |
|
|
| T |
16085240 |
gacgcctgaggttaatactaacgtgttcaatgttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaaattgcggtggctgc |
16085141 |
T |
|
| Q |
279 |
ggtgttattcatagttgtggttgctgtgttattacttaaagttgtggtgttgcagttgctgtttacacataagctacaaca |
359 |
Q |
| |
|
| ||||||| || || |||||| | |||||| || ||||||||||||||| ||| |||||||| ||| || ||||||| |
|
|
| T |
16085140 |
gttgttatttgaagatgcggttgccg-attattatttgaagttgtggtgttgcggttactgtttacgcatcaggtacaaca |
16085061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 91 - 375
Target Start/End: Complemental strand, 16088255 - 16087968
Alignment:
| Q |
91 |
tgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcct |
190 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||||||| || |
|
|
| T |
16088255 |
tgttctgttacctccatcattaggagagggacctgctgtatcc-ggggagtttgcgcacattgatgtggataaattccaaggacaatcttcgtgacaccc |
16088157 |
T |
|
| Q |
191 |
caggttaatactaacgtg----attttaca-gtttactttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggtggctgcggtgtta |
285 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||||| |||||||||||| |||| | ||||| | |||||||||||||||||| ||||| |
|
|
| T |
16088156 |
taggttaatactaacgtgttcaattttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgtta |
16088057 |
T |
|
| Q |
286 |
ttcatagttgtggttgctgtgttattacttaaagttgtggtgttgcagttgctgtttacacataagctacaacaatcttggaatttatcc |
375 |
Q |
| |
|
|| || || |||||| | ||||||| || |||||| |||||||| ||| |||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
16088056 |
tttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttactgtttacgcatcaggtacaacaatcttggaatttatcc |
16087968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 14837329 - 14837194
Alignment:
| Q |
73 |
taaacttatagttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaagg |
172 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||| | |
|
|
| T |
14837329 |
taaacttatagttgttgttgttctgttacctccatcactaggagaaggatctgatgtatcctggagagtttgcgcacattgaggcggacaaattccaatg |
14837230 |
T |
|
| Q |
173 |
acagtcttcgtgacgcctcaggttaatactaacgtg |
208 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
14837229 |
acagccttcatgatgcctcaggttaatactaacgtg |
14837194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 3640828 - 3640952
Alignment:
| Q |
84 |
ttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt |
183 |
Q |
| |
|
|||||| || |||||||||||||| ||||||| ||| ||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
3640828 |
ttcttgttgctctgttacctccataactaggataagtacctgttgaatcctggggagtttgcgcatattgaggaggataaattccaaggacagtcctcgt |
3640927 |
T |
|
| Q |
184 |
gacgcctcaggttaatactaacgtg |
208 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3640928 |
gacgcctcaggttaatactaacgtg |
3640952 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 327 - 522
Target Start/End: Original strand, 5896 - 6091
Alignment:
| Q |
327 |
gttgcagttgctgtttacacataagctacaacaatcttggaatttatcctttataattgtgacctcaagttaaggtttgggtgattggaaaattagtaca |
426 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
5896 |
gttgcggttgctgtttacacattaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaaggtttgggtgattggaaaattagtgca |
5995 |
T |
|
| Q |
427 |
gaccttctacaaggtacacaactttcattcaacaattgatttccaaaataaattgccgt-aacttctat-tgttatatattggttttttgaattagaa |
522 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| |||| ||| |||||| |||||||| ||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
5996 |
gaccttctacgaggtacacagctttcattcaataattaattgacaaaat--attgccgtgaacttctatctgttatatatttgtgttttgaattagaa |
6091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 28 - 272
Target Start/End: Original strand, 5627 - 5877
Alignment:
| Q |
28 |
ttcttctcctccaatttt-ctaattcctgaat-aaacatttacctgataaacttatagttcttgctgttctgttacctccatcactaggagaaggacctg |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||| |||||||| || |||| ||| || |||||||| |||||||| | |||||||| ||| || |
|
|
| T |
5627 |
ttcttctcctccaatttttctaattcctgagttaaacatctacctgatcaaattatcattcgtgttgttctgtaacctccataattaggagaatgacatg |
5726 |
T |
|
| Q |
126 |
ctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatacta---acgtgattttaca-gttta |
221 |
Q |
| |
|
|| |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | | ||||| || ||||| |
|
|
| T |
5727 |
ttgaatcctgaggagttagcgcacattgaggcggataaattccaatgacagtcttcgtgacgcctcaggttaatgctatccatttaattttgcaggttta |
5826 |
T |
|
| Q |
222 |
ctttctagtttattttgcagaatcaggttcggtgttatttgaagttgcggt |
272 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5827 |
atttctagtttgttttgcagaatctagttcgttgttatttgaagttgcggt |
5877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 524
Target Start/End: Original strand, 6108 - 6175
Alignment:
| Q |
457 |
aacaattgatttccaaaataaattgccgtaacttctattgttatatattggttttttgaattagaaac |
524 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| ||||||||| |||| | ||||||| ||||||| |
|
|
| T |
6108 |
aacaattgatttccaaaataaagtgccgcaacttatattgttatttatttgccttttgaaatagaaac |
6175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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