View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0751_low_5 (Length: 418)
Name: NF0751_low_5
Description: NF0751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0751_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 44879209 - 44879545
Alignment:
| Q |
16 |
attcatatgatgcattgagccaattgtgtttacttcagttataaactctttctctccatgaggcaatatcttgtcaagtttcttcactgcaattagagta |
115 |
Q |
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| T |
44879209 |
attcatatgatgcattgagccaattgtgtttacttcagttataaactctttctctccatgaggcaatatcttgtcaagtttcttcactgcaattagagta |
44879308 |
T |
|
| Q |
116 |
ccatctccgaggcttcctttatacacacttccaaacccacctacaaaatatataaactgttggcaacaaattttactgaaagcaaaacttctctccctgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879309 |
ccatctccgaggcttcctttatacacacttccaaatccacctacaaaatatataaactgttggcaacaaattttactgaaagcaaaacttctctccctgt |
44879408 |
T |
|
| Q |
216 |
gacgcatcaatcaaacagtccctgcattaaattcattcattagacaacatcgtgtgacacgttaaatcaatatgtgacgatccacatggacttcacgtca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44879409 |
gacgcatcaatcaaacagtccctgcattaaattcattcattagacaacatcgtgtgacacgttaaatgaatatgtgacgatccacatggacttcacgtca |
44879508 |
T |
|
| Q |
316 |
aaatcacatctccacgcacaaaattgactgtcataat |
352 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44879509 |
aaatcacatctccacgcacaaaattgactgtcataat |
44879545 |
T |
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