View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0751_low_8 (Length: 310)
Name: NF0751_low_8
Description: NF0751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0751_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 33234207 - 33234316
Alignment:
| Q |
125 |
aataatgtactgacattgaaatgtgtatttgaacatgtcttttctcctttgattgtggtgattaaagttatcatcttttccacagaaatttgaaattcaa |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234207 |
aataatgtactgacattgaaatgtgtatttgaacatgtcttttctcctttgattgcggtgattaaagttatcatcttttccacagaaatttgaaattcaa |
33234306 |
T |
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| Q |
225 |
cctgaaaggt |
234 |
Q |
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||| |||||| |
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| T |
33234307 |
cctaaaaggt |
33234316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 33234137 - 33234182
Alignment:
| Q |
59 |
cataggcatccatttatagaggtcaattatcagttataagcaattg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234137 |
cataggcatccatttatagaggtcaattatcagttataagcaattg |
33234182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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