View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752-Insertion-11 (Length: 496)

Name: NF0752-Insertion-11
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752-Insertion-11
NF0752-Insertion-11
[»] chr5 (17 HSPs)
chr5 (7-496)||(35074067-35074556)
chr5 (7-200)||(35079332-35079525)
chr5 (249-496)||(29681589-29681840)
chr5 (249-418)||(29948436-29948605)
chr5 (359-496)||(7823037-7823174)
chr5 (289-402)||(17627201-17627314)
chr5 (254-373)||(31109066-31109184)
chr5 (369-443)||(17604824-17604898)
chr5 (265-432)||(16633282-16633448)
chr5 (289-381)||(24213349-24213441)
chr5 (258-403)||(35105021-35105166)
chr5 (265-306)||(19783379-19783420)
chr5 (289-381)||(24228342-24228434)
chr5 (264-306)||(21575051-21575092)
chr5 (288-355)||(40786652-40786721)
chr5 (270-319)||(17604693-17604741)
chr5 (273-306)||(19780132-19780165)
[»] chr1 (16 HSPs)
chr1 (250-496)||(28201589-28201835)
chr1 (7-226)||(25802683-25802902)
chr1 (55-234)||(23922253-23922432)
chr1 (254-457)||(32808765-32808966)
chr1 (254-381)||(11444091-11444217)
chr1 (289-381)||(18640559-18640650)
chr1 (257-375)||(18643265-18643382)
chr1 (60-226)||(23914624-23914790)
chr1 (289-433)||(29547775-29547921)
chr1 (254-437)||(32805223-32805405)
chr1 (349-470)||(46201720-46201841)
chr1 (249-381)||(11441722-11441853)
chr1 (270-373)||(29530099-29530204)
chr1 (269-306)||(40279327-40279364)
chr1 (265-299)||(40274546-40274580)
chr1 (255-303)||(27417558-27417605)
[»] chr2 (8 HSPs)
chr2 (249-496)||(19912261-19912508)
chr2 (256-496)||(45276339-45276569)
chr2 (270-374)||(25231997-25232103)
chr2 (270-381)||(25225692-25225805)
chr2 (317-494)||(21289557-21289728)
chr2 (415-473)||(13495222-13495283)
chr2 (290-381)||(21294962-21295053)
chr2 (257-333)||(18731431-18731506)
[»] chr4 (11 HSPs)
chr4 (267-494)||(56341734-56341965)
chr4 (280-449)||(26654453-26654621)
chr4 (249-381)||(12746602-12746733)
chr4 (270-486)||(51700233-51700445)
chr4 (268-392)||(18902113-18902236)
chr4 (274-433)||(52311238-52311397)
chr4 (406-461)||(2928815-2928870)
chr4 (265-306)||(20275881-20275922)
chr4 (254-308)||(5350916-5350969)
chr4 (399-445)||(6408068-6408114)
chr4 (265-306)||(26997169-26997210)
[»] chr3 (10 HSPs)
chr3 (249-381)||(21587193-21587324)
chr3 (249-381)||(44122059-44122190)
chr3 (270-371)||(20463196-20463296)
chr3 (270-381)||(20458821-20458930)
chr3 (257-355)||(7642295-7642391)
chr3 (290-431)||(44126738-44126880)
chr3 (289-371)||(13639624-13639706)
chr3 (359-431)||(7873862-7873934)
chr3 (265-306)||(16221571-16221612)
chr3 (270-354)||(20459097-20459180)
[»] chr8 (2 HSPs)
chr8 (254-381)||(29185596-29185722)
chr8 (328-429)||(12145654-12145757)
[»] chr7 (7 HSPs)
chr7 (279-372)||(42129519-42129611)
chr7 (270-413)||(7578539-7578682)
chr7 (369-445)||(14719291-14719367)
chr7 (366-429)||(28904091-28904154)
chr7 (265-306)||(39865395-39865436)
chr7 (265-307)||(33190454-33190496)
chr7 (249-351)||(35339058-35339159)
[»] chr6 (1 HSPs)
chr6 (289-381)||(19441199-19441291)
[»] scaffold0481 (2 HSPs)
scaffold0481 (377-432)||(1273-1327)
scaffold0481 (335-381)||(1039-1085)
[»] scaffold1457 (1 HSPs)
scaffold1457 (252-289)||(1072-1109)
[»] scaffold0062 (2 HSPs)
scaffold0062 (290-386)||(19856-19952)
scaffold0062 (290-386)||(30024-30120)


Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 496
Target Start/End: Complemental strand, 35074556 - 35074067
Alignment:
Q  7 aggtacaaggtgcattgcgtgaggatccggaaatgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35074556 aggtacaaggtgcattgcgtgaggatccggaaatgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatga 35074457  T
Q  107 aaagattgtcaatatttcttccattgttgcactgaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaa 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35074456 aaagattgtcaatacttcttccattgttgcactgaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaa 35074357  T
Q  207 tttacattttatgaataaaaccacaattacatatacacacaggtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataa 306  Q
    |||||||||||| |||||||||||||||| ||| ||||||  |||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  35074356 tttacattttatcaataaaaccacaattatatacacacacgtgtgttatgaataataaatttgatggatgtccatccttaagtctttcaccttcctataa 35074257  T
Q  307 tccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagc 406  Q
    | || | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35074256 ttctcactagtgaatgtatgattagtggtccttaattgctttgatcattaatttgctcatttgtatcctgtaaatgagactcatattttagtgtaaaagc 35074157  T
Q  407 acacttgtaaagagaataatacaaaatctctcatcttctctatctttgatcatcttctttatgttttatcttgtcatttattttatttca 496  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  35074156 acacttttaaagagaataatacaaaatctcctatcttctctatctttgatcatcttctttatttttgctcttgtcatttattttatttca 35074067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 35079525 - 35079332
Alignment:
Q  7 aggtacaaggtgcattgcgtgaggatccggaaatgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatga 106  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||    
T  35079525 aggtacaaggtgcattgcgcgaggatccggaaatgataagcttggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtagcttggctaacga 35079426  T
Q  107 aaagattgtcaatatttcttccattgttgcactgaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaatt 200  Q
    ||||||||| |||| ||||||||||| |||| |||||||||| |||| ||| || ||| |||||||||| ||||||||||||||||||||||||    
T  35079425 aaagattgttaatacttcttccattgctgcattgaatcatgagatgatgttgtatacagatattgtagtcatagccggaggccatctataaatt 35079332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 249 - 496
Target Start/End: Complemental strand, 29681840 - 29681589
Alignment:
Q  249 gtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtat------gattagtgctccttaat 342  Q
    |||| ||||||||||||||| |||||||| |||| |||| ||||||||||| |||||| |   ||||||||||||||      | |||||| |||| |||    
T  29681840 gtgttatgaataataaacttagtggatgttcatctttaa-tcttccacctttctataacctccattagtgaatgtatatgtatggttagtggtcctcaat 29681742  T
Q  343 tgctttgatcattaatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatct 442  Q
    || |||||||||  | ||| ||||||||||||| ||||| ||| |||||||||||| ||| | |||||||||||   ||||||||||||| || |||| |    
T  29681741 tgttttgatcatccacttgttcatttgtgtcctataaataagagtcatattttagt-taataacacacttgtaatatgaataatacaaaaactttcattt 29681643  T
Q  443 tctctatctttgatcatcttctttatgttttatcttgtcatttattttatttca 496  Q
    |||||||||||| || |||||| ||| ||| ||||||||||||| |||||||||    
T  29681642 tctctatctttggtcttcttctctatttttcatcttgtcatttagtttatttca 29681589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 29948605 - 29948436
Alignment:
Q  249 gtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgcttt 348  Q
    |||| ||||||||| ||||| |||||||||||||||||| |||||||| |||||||||  | ||| |||||| | ||| ||| || ||||||||| ||||    
T  29948605 gtgttatgaataattaacttagtggatgtccatccttaa-tcttccacattcctataagtcctataagtgaagggatggttactggtccttaattacttt 29948507  T
Q  349 gatcattaatttgctca-tttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaag 418  Q
    ||||||| | |||||||  |||| |||| ||||| | |||| ||||||||||| ||| |||||||| ||||    
T  29948506 gatcattcacttgctcagattgtatcctataaataatactcgtattttagtgtgaaaacacacttgaaaag 29948436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 7823174 - 7823037
Alignment:
Q  359 ttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttctctatctttgatca 458  Q
    ||||| ||||||||||| |||||  |||| || ||||  ||||||   |||||||| |||||||||||||||||  |||||||||||||||||||||| |    
T  7823174 ttgcttatttgtgtcctataaataggacttatgttttgatgtaaagaaacacttgtgaagagaataatacaaaagttctcatcttctctatctttgatta 7823075  T
Q  459 tcttctttatgttttatcttgtcatttattttatttca 496  Q
    |||||| ||  ||| || |||||||||| |||||||||    
T  7823074 tcttctctacatttgattttgtcatttagtttatttca 7823037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 17627201 - 17627314
Alignment:
Q  289 tcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaatgagactc 388  Q
    |||| ||||||||||||| | | || ||||||| |||| |||||| ||||||| |  |||||||||| ||||||||||||||||||  |||||  ||||     
T  17627201 tctttcaccttcctataaacttaataagtgaatatatggttagtggtccttaaatattttgatcatttatttgctcatttgtgtccaataaatatgactt 17627300  T
Q  389 atattttagtgtaa 402  Q
    ||||||||||||||    
T  17627301 atattttagtgtaa 17627314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 373
Target Start/End: Complemental strand, 31109184 - 31109066
Alignment:
Q  254 atgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatca 353  Q
    ||||||||||| |||  ||||||||||||||||| ||| |||| |||||||||    |||||||||||||||| ||| || || |||||  ||| |||||    
T  31109184 atgaataataagcttaatggatgtccatccttaa-tctcccacattcctataacttctattagtgaatgtatgtttaatggtctttaatgacttcgatca 31109086  T
Q  354 ttaatttgctcatttgtgtc 373  Q
    || | |||||||||||||||    
T  31109085 ttcacttgctcatttgtgtc 31109066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 443
Target Start/End: Original strand, 17604824 - 17604898
Alignment:
Q  369 gtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatctt 443  Q
    ||||||| |||||  | |||||||| ||||||||| |||||||||| ||||||||||||||||| || |||||||    
T  17604824 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaaaactttcatctt 17604898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 432
Target Start/End: Complemental strand, 16633448 - 16633282
Alignment:
Q  265 acttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctc 364  Q
    |||| ||||||||||||||||| ||||||||||||||||||| ||  ||||| || || ||  ||||||  |||||||| ||||||||||| | || |||    
T  16633448 acttagtggatgtccatcctta-gtcttccaccttcctataa-ccccattagcgagtgaatagttagtggaccttaattactttgatcattcacttactc 16633351  T
Q  365 -atttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaa 432  Q
     | ||||||||| |||||  | |||||||| || || |||  ||| ||||| |||||||||||| ||||    
T  16633350 aacttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaa 16633282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 24213441 - 24213349
Alignment:
Q  289 tcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaat 381  Q
    |||||||||||| ||||| |   |||||| |||||||| ||| || || ||||||| |||||||||| | ||||||||||||||||| |||||    
T  24213441 tcttccaccttcttataacctccattagtaaatgtatggttattggtctttaattggtttgatcattcacttgctcatttgtgtcctataaat 24213349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 403
Target Start/End: Original strand, 35105021 - 35105166
Alignment:
Q  258 ataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcatt-a 356  Q
    ||||| ||||| ||||||||||||||||| ||||| |||||| | ||||  |  || |||||||| ||| |||||| ||||||||| ||||||||||| |    
T  35105021 ataattaacttagtggatgtccatcctta-gtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattca 35105119  T
Q  357 atttgctcat-ttgtgtcctgtaaatgagactcatattttagtgtaaa 403  Q
     |||||||||  ||| | || |||||  ||||||||||||||||||||    
T  35105120 ctttgctcatactgtat-ctataaataggactcatattttagtgtaaa 35105166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 19783420 - 19783379
Alignment:
Q  265 acttggtggatgtccatccttaagtcttccaccttcctataa 306  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  19783420 acttagtggatgtccatccttaagtcttccacctttctataa 19783379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 24228434 - 24228342
Alignment:
Q  289 tcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaat 381  Q
    |||||||||||||||||| ||| |||| |  ||||||| ||| || || ||||||| |||||||||| | ||||||| |||| |||| |||||    
T  24228434 tcttccaccttcctataaccctcattaatatatgtatggttattggtctttaattggtttgatcattcacttgctcaattgtatcctataaat 24228342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 21575092 - 21575051
Alignment:
Q  264 aacttggtggatgtccatccttaagtcttccaccttcctataa 306  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  21575092 aacttagtggatgtccatcctta-gtcttccaccttcctataa 21575051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 40786652 - 40786721
Alignment:
Q  288 gtcttccaccttcctataatccttattagtgaatgtatgat--tagtgctccttaattgctttgatcatt 355  Q
    ||||||||||||||||||| ||  |||||| |||||||| |  ||||| |||||||||| ||||||||||    
T  40786652 gtcttccaccttcctataacccccattagtaaatgtatggttatagtggtccttaattgatttgatcatt 40786721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 17604693 - 17604741
Alignment:
Q  270 gtggatgtccatccttaagtcttccaccttcctataatccttattagtga 319  Q
    ||||||||||||||||| ||||||||||||||||||| ||  ||||||||    
T  17604693 gtggatgtccatcctta-gtcttccaccttcctataacccccattagtga 17604741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 306
Target Start/End: Complemental strand, 19780165 - 19780132
Alignment:
Q  273 gatgtccatccttaagtcttccaccttcctataa 306  Q
    ||||||||||||||||||| ||||||||||||||    
T  19780165 gatgtccatccttaagtctcccaccttcctataa 19780132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 250 - 496
Target Start/End: Complemental strand, 28201835 - 28201589
Alignment:
Q  250 tgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatcctt-attagtgaatgtatgattagtgctccttaattgcttt 348  Q
    ||||||||||||||||| | |||||||||||||||| | |||||||||||||||||| |||  ||||||||||||||| |||||  || |||||||||||    
T  28201835 tgtcatgaataataaacatagtggatgtccatccttta-tcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgcttt 28201737  T
Q  349 gatcattaatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttctcta 448  Q
    ||| ||| | ||| |||||| |||||| |||||  ||||||||||||| ||||| ||||||||||||||||||||| ||||||| | ||||| |||||||    
T  28201736 gataattcacttgttcatttatgtcctataaatatgactcatattttaatgtaatagcacacttgtaaagagaatagtacaaaaacactcatattctcta 28201637  T
Q  449 tctttgatcatcttctttatgttttatcttgtcatttattttatttca 496  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  28201636 tctttgatcatcttctctattttttatcttgtcatttagtttatttca 28201589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 25802902 - 25802683
Alignment:
Q  7 aggtacaaggtgcattgcgtgaggatccggaaatgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatga 106  Q
    ||||| |||| ||||||  ||||||||||||| ||||| |  |||||||||| |||||| | |||||| | |||||||| ||||||||||| ||| ||||    
T  25802902 aggtaaaaggagcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatga 25802803  T
Q  107 aaagattgtcaatatttcttccattgttgcactgaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaa 206  Q
    ||||||||| |||||||||||||||| | ||||||||||||| ||| |||| || ||  |||||||||||||||| ||||| ||||||| ||| || |||    
T  25802802 aaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatactgatattgtagtgatagctggaggtcatctatgaatcaaaaaa 25802703  T
Q  207 tttacattttatgaataaaa 226  Q
    |||| |||  ||||||||||    
T  25802702 tttatattgaatgaataaaa 25802683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 55 - 234
Target Start/End: Complemental strand, 23922432 - 23922253
Alignment:
Q  55 tcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatatttcttccattgttgcactgaatcatgacatgaa 154  Q
    |||| |||||||| ||||||||||  | |||||||  |||||| |||  |||||||| ||| ||||  ||| |||||| | || |||||||||| ||| |    
T  23922432 tcaaatatgctagtgatgcacttggtaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgca 23922333  T
Q  155 gttatacacaaatattgtagtgatagccggaggccatctataaattaataaatttacattttatgaataaaaccacaatt 234  Q
    |||||| |   |||||||| ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  23922332 gttatataatgatattgtattgatagccggaggccatctataaataaataaatttatatttcatgaataaaaccacaatt 23922253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 254 - 457
Target Start/End: Original strand, 32808765 - 32808966
Alignment:
Q  254 atgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatca 353  Q
    |||||||||||||||  ||||| ||||||||||| |||||||||||||||||| ||  |||||||||| |||| |||||| |||||||||| |||||  |    
T  32808765 atgaataataaacttcatggatttccatccttaa-tcttccaccttcctataacccc-attagtgaatatatggttagtggtccttaattgatttgaata 32808862  T
Q  354 ttaatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttctctatcttt 453  Q
    || | ||||||| || | | || ||||| | ||||||||||||| ||||   |||||||| || |||||||| |||||| |||||||||||| ||| |||    
T  32808863 ttcacttgctcaattattttctataaataaaactcatattttagcgtaatgacacacttgaaatgagaataagacaaaaactctcatcttctatattttt 32808962  T
Q  454 gatc 457  Q
    ||||    
T  32808963 gatc 32808966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 11444217 - 11444091
Alignment:
Q  254 atgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatca 353  Q
    |||||||||||  || |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||| || | ||||||  |||||||||    
T  11444217 atgaataataagtttagtggatgtccatccttaa-tcttccaccttcctataaccattattagtgaatgtatgcttaatggttcttaatgactttgatca 11444119  T
Q  354 ttaatttgctcatttgtgtcctgtaaat 381  Q
    || | ||||||||||||||||| |||||    
T  11444118 ttcacttgctcatttgtgtcctataaat 11444091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 18640650 - 18640559
Alignment:
Q  289 tcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaat 381  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||| |||||    
T  18640650 tcttccaccttcctataa-cctcattagtgaatgtatggttagtggtccttaattgctttgatcattcacttgctcatttgtgtcctataaat 18640559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 257 - 375
Target Start/End: Complemental strand, 18643382 - 18643265
Alignment:
Q  257 aataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcatta 356  Q
    ||||||||| || |||||| || |||||||| |||  |||||| |||||||||  |||||||| |||||| |||||| |||||||||||||||||||||     
T  18643382 aataataaatttagtggatatctatccttaa-tctatcacctttctataatccccattagtgactgtatggttagtggtccttaattgctttgatcattc 18643284  T
Q  357 atttgctcatttgtgtcct 375  Q
    |||||||||||||||||||    
T  18643283 atttgctcatttgtgtcct 18643265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 23914790 - 23914624
Alignment:
Q  60 tatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatatttcttccattgttgcactgaatcatgacatgaagttat 159  Q
    |||||||| ||||||||||  | |||||||  |||||| |||  |||||||| ||| ||||  ||| |||||| | || |||||||||| ||| ||||||    
T  23914790 tatgctagtgatgcacttggaaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttat 23914691  T
Q  160 acacaaatattgtagtgatagccggaggccatctataaattaataaatttacattttatgaataaaa 226  Q
    | |   |||||||| ||||||||| ||||||||||||||| ||| |||||| |||| ||||||||||    
T  23914690 ataatgatattgtattgatagccgcaggccatctataaataaattaatttatatttcatgaataaaa 23914624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 433
Target Start/End: Original strand, 29547775 - 29547921
Alignment:
Q  289 tcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaatgagactc 388  Q
    |||||||||||||||||||||  |||||| |||| ||| |||||| |||||||||  |||||||||| | |||||||||| |||||| |||||  |||      
T  29547775 tcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcatttatgtcctataaataggacct 29547874  T
Q  389 atattttagtgtaaa-agcacacttg-taaagagaataatacaaaat 433  Q
    ||||| || |||||| | ||||||||  |||||||||||||||||||    
T  29547875 atattgtaatgtaaagaacacacttgaaaaagagaataatacaaaat 29547921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 254 - 437
Target Start/End: Original strand, 32805223 - 32805405
Alignment:
Q  254 atgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatca 353  Q
    |||||||||||| || | |||| ||||||||||| ||||| || || |||||| | |||||| | |||||||||||| |  |  ||||||| ||||||||    
T  32805223 atgaataataaatttagcggatatccatccttaa-tcttctacttttctataacctttattaataaatgtatgattattaatttttaattgatttgatca 32805321  T
Q  354 ttaatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctct 437  Q
    || |  | |||| |  |||||| || || |||||||||||||||||||| | |||||||||||||| || || |||||| ||||    
T  32805322 ttcacatactcaatcatgtcctatagataagactcatattttagtgtaataacacacttgtaaagaaaagaagacaaaaactct 32805405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 470
Target Start/End: Original strand, 46201720 - 46201841
Alignment:
Q  349 gatcattaatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttctcta 448  Q
    ||||||| | ||||| |||||| | || ||||| ||| | ||||||||||||||||  | |||||| || |||||||||| ||| |||||| |||||| |    
T  46201720 gatcattcacttgcttatttgtattctataaataagatttatattttagtgtaaaaatatacttgtgaatagaataataccaaaactctcaccttctcca 46201819  T
Q  449 tctttgatcatcttctttatgt 470  Q
    ||||||||| | ||||||||||    
T  46201820 tctttgatcttgttctttatgt 46201841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 11441853 - 11441722
Alignment:
Q  249 gtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgcttt 348  Q
    |||| ||||||||||| |||  |||||| |||||||||| |||||||||||| | ||| |  | || ||||||||||| ||| || ||||||||  ||||    
T  11441853 gtgttatgaataataagcttaatggatgcccatccttaa-tcttccaccttcgtgtaaccacttttggtgaatgtatgtttaatggtccttaatgacttt 11441755  T
Q  349 gatcattaatttgctcatttgtgtcctgtaaat 381  Q
    |||| || | ||||| ||||||||||| |||||    
T  11441754 gatctttcacttgcttatttgtgtcctataaat 11441722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 373
Target Start/End: Original strand, 29530099 - 29530204
Alignment:
Q  270 gtggatgtccat--ccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatt 367  Q
    ||||||||||||  |||| | |||||||| ||||| ||| ||  || ||| |||| ||| |||||| |||||||||| |||||||||| | |||||||||    
T  29530099 gtggatgtccatgtccttcaatcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcacttgctcatt 29530198  T
Q  368 tgtgtc 373  Q
    ||||||    
T  29530199 tgtgtc 29530204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 40279364 - 40279327
Alignment:
Q  269 ggtggatgtccatccttaagtcttccaccttcctataa 306  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  40279364 ggtggatgtccatccttaagtcttccaccttactataa 40279327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 299
Target Start/End: Complemental strand, 40274580 - 40274546
Alignment:
Q  265 acttggtggatgtccatccttaagtcttccacctt 299  Q
    |||| ||||||||||||||||||||||||||||||    
T  40274580 acttagtggatgtccatccttaagtcttccacctt 40274546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 27417605 - 27417558
Alignment:
Q  255 tgaataataaacttggtggatgtccatccttaagtcttccaccttccta 303  Q
    |||||||| ||||| |||||||||||||||| ||||| |||||||||||    
T  27417605 tgaataattaactttgtggatgtccatcctt-agtctcccaccttccta 27417558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 249 - 496
Target Start/End: Original strand, 19912261 - 19912508
Alignment:
Q  249 gtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgcttt 348  Q
    |||| |||||||||| |||| ||||||||||| |||||| |||||||||||||||||| || ||||| |||||||||| |||||  ||||||||||||||    
T  19912261 gtgttatgaataatagacttagtggatgtccacccttaa-tcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgcttt 19912359  T
Q  349 gatcattaatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagc-acacttgtaaagagaataatacaaaatctctcatcttctct 447  Q
    ||||| | | ||||||||||||||||| |||||  |||  ||||| || |||||||   |||||||| ||||||||||||||||| ||||||||||||||    
T  19912360 gatcactcacttgctcatttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaaagctctcatcttctct 19912459  T
Q  448 atctttgatcatcttctttatgttttatcttgtcatttattttatttca 496  Q
    ||||||||| ||||||| ||  ||| || |||||||||| |||||||||    
T  19912460 atctttgattatcttctctacatttgattttgtcatttagtttatttca 19912508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 256 - 496
Target Start/End: Original strand, 45276339 - 45276569
Alignment:
Q  256 gaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcatt 355  Q
    |||||| ||||||  ||||||||||||| | | |||||||||||||||||| || | |||||||||||||| |||||| |||||||| | ||||| ||||    
T  45276339 gaataacaaacttaatggatgtccatccctca-tcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccatt 45276437  T
Q  356 aatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttctctatctttga 455  Q
     | || |||||||||||||| |||||  |||||||||||||||||||    |||||| |||||||         ||| |||||||||||||||||||| |    
T  45276438 cacttactcatttgtgtcctataaataggactcatattttagtgtaatgatacacttctaaagag---------aaagctctcatcttctctatctttta 45276528  T
Q  456 tcatcttctttatgttttatcttgtcatttattttatttca 496  Q
    ||||||||  ||| ||||||||||||||||| |||||||||    
T  45276529 tcatcttcactattttttatcttgtcatttagtttatttca 45276569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 25231997 - 25232103
Alignment:
Q  270 gtggatgtccat--ccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatt 367  Q
    ||||||||||||  |||| | ||||||||||||||||||  |  |||||| |||||||| |||||| |||||||||| |||||||||| | |||||||||    
T  25231997 gtggatgtccatgtccttcaatcttccaccttcctataactcccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcatt 25232096  T
Q  368 tgtgtcc 374  Q
    |||||||    
T  25232097 tgtgtcc 25232103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 381
Target Start/End: Original strand, 25225692 - 25225805
Alignment:
Q  270 gtggatgtccat--ccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatt 367  Q
    ||||||||||||  |||| | |||||||||||| |||||  || |||||| |||||||| |||||| | |||||||| |||||||||| ||||| |||||    
T  25225692 gtggatgtccatgtccttcaatcttccaccttcatataactctcattagtaaatgtatggttagtgattcttaattggtttgatcattcatttgttcatt 25225791  T
Q  368 tgtgtcctgtaaat 381  Q
    |||||||| |||||    
T  25225792 tgtgtcctataaat 25225805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 494
Target Start/End: Complemental strand, 21289728 - 21289557
Alignment:
Q  317 tgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaag-cacacttgta 415  Q
    |||||||||| ||| || ||||||||| ||||||||||| | ||||||||||||||||| |||||  |||| ||||| || ||| || | ||||||| |     
T  21289728 tgaatgtatgcttaatgatccttaattactttgatcattcacttgctcatttgtgtcctataaataggacttatattgtaatgtgaatgacacacttatg 21289629  T
Q  416 aagagaataatacaaaatctctcatcttctctatctttgatcatcttctttatgttttatcttgtcatttattttattt 494  Q
    |       ||||||||| ||||||| ||||||||||||||| ||||||| ||  ||| || |||||||||| |||||||    
T  21289628 a-------aatacaaaagctctcatgttctctatctttgattatcttctctacatttgattttgtcatttagtttattt 21289557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 473
Target Start/End: Original strand, 13495222 - 13495283
Alignment:
Q  415 aaagagaataatacaaaatctctcatcttctctat---ctttgatcatcttctttatgtttt 473  Q
    |||||||||||||||||| || |||||||||||||   ||||||||||||||| ||| ||||    
T  13495222 aaagagaataatacaaaaactttcatcttctctatgtgctttgatcatcttctctatttttt 13495283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 21295053 - 21294962
Alignment:
Q  290 cttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaat 381  Q
    ||||||||||| ||| | |  |||||||||||||||  ||| || ||||||||  ||||||||||| | |||||||||||| |||| |||||    
T  21295053 cttccaccttcttatcaccactattagtgaatgtatatttaatggtccttaatgactttgatcattcacttgctcatttgtatcctataaat 21294962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 18731431 - 18731506
Alignment:
Q  257 aataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtg 333  Q
    |||||||||||| |||||||||||||||||| |||||| |||| |||| |  |  | ||||||||||||| ||||||    
T  18731431 aataataaacttagtggatgtccatccttaa-tcttccccctttctatgactcccactagtgaatgtatggttagtg 18731506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 267 - 494
Target Start/End: Complemental strand, 56341965 - 56341734
Alignment:
Q  267 ttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcat 366  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| |||||||||| || ||| |||||| |  ||||||| ||| |||||| | ||||||||    
T  56341965 ttggtggatgttcatcttta-gtcttccaccttcctataatctttattagtgagtggatggttagtggtggttaattgttttcatcattcacttgctcat 56341867  T
Q  367 ttgtgtcctgtaaatgagactcatatttt-----agtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttctctatctttgatcatct 461  Q
    || |||| | |||||  |||| || ||||     ||| ||||| ||   |||| ||||||||||||||||| ||||||||||||   |||||||||||||    
T  56341866 ttatgtcttataaatatgacttatgttttgttttagtataaaaacatcattgtgaagagaataatacaaaaactctcatcttcttggtctttgatcatct 56341767  T
Q  462 tctttatgttttatcttgtcatttattttattt 494  Q
    ||| ||| ||||||||||||||||| |||||||    
T  56341766 tctctattttttatcttgtcatttaatttattt 56341734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 449
Target Start/End: Original strand, 26654453 - 26654621
Alignment:
Q  280 atccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaa 379  Q
    |||||||| |||||||||||||||||| | |  || ||||||||||| |||||| ||||||||||||||||| ||| | || |||||||||||||| ||     
T  26654453 atccttaa-tcttccaccttcctataaccatcgttggtgaatgtatggttagtggtccttaattgctttgattattcacttactcatttgtgtcctatag 26654551  T
Q  380 atgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttctctat 449  Q
    ||     ||||||||||||||||    |||||||||||||||||||||||| | ||| ||| ||||||||    
T  26654552 atagttatcatattttagtgtaatgatacacttgtaaagagaataatacaatagctcccattttctctat 26654621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 12746733 - 12746602
Alignment:
Q  249 gtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgcttt 348  Q
    |||| ||||||||||| ||| ||||||||||||||| || |||||||||||||||||| |  |||||||||||||||  ||| || ||||||||  ||||    
T  12746733 gtgttatgaataataagcttagtggatgtccatcctcaa-tcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgacttt 12746635  T
Q  349 gatcattaatttgctcatttgtgtcctgtaaat 381  Q
    ||||||| | ||||||||||| ||||| |||||    
T  12746634 gatcattcacttgctcatttgcgtcctataaat 12746602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 486
Target Start/End: Complemental strand, 51700445 - 51700233
Alignment:
Q  270 gtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttg 369  Q
    |||||||||||||||||| ||||| ||||| ||||||  || |||||||||||||||||||  | | |||||||  |||||||||| |  ||||||||||    
T  51700445 gtggatgtccatccttaa-tcttctacctttctataactctcattagtgaatgtatgattatcggttcttaattattttgatcattcacatgctcatttg 51700347  T
Q  370 tgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttctctatctttgatcatcttctttatg 469  Q
    | || | ||||   ||||||||| ||| |||||    ||||||||    |||||||||||||| |  |||||||||||||||||||| ||||||| ||      
T  51700346 tatcatataaagaggactcatatcttaatgtaa---tacacttgtttctagaataatacaaaagccatcatcttctctatctttgattatcttctctaca 51700250  T
Q  470 ttttatcttgtcattta 486  Q
    ||| |||||||||||||    
T  51700249 tttgatcttgtcattta 51700233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 268 - 392
Target Start/End: Complemental strand, 18902236 - 18902113
Alignment:
Q  268 tggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatt 367  Q
    |||||||||| ||||||||| |||| ||||||||||||| |   ||||||||||| ||| ||| || |||||||||| ||||||| || | |||||||||    
T  18902236 tggtggatgttcatccttaa-tctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcatt 18902138  T
Q  368 tgtgtcctgtaaatgagactcatat 392  Q
    |||||||| |||||  |||||||||    
T  18902137 tgtgtcctataaatctgactcatat 18902113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 433
Target Start/End: Complemental strand, 52311397 - 52311238
Alignment:
Q  274 atgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcat-ttgtgt 372  Q
    |||||||||| || ||||||||||||||||||| || |||| |||| || ||  ||||||  |||||||| ||||||||| | | ||  |||| ||||||    
T  52311397 atgtccatcccta-gtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatcttgtgt 52311299  T
Q  373 cctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaat 433  Q
    ||| |||||  || |||||||  ||||||||  |||| |||| ||||||||||||||||||    
T  52311298 cctataaataggattcatattgcagtgtaaagacacatttgtgaagagaataatacaaaat 52311238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 2928870 - 2928815
Alignment:
Q  406 cacacttgtaaagagaataatacaaaatctctcatcttctctatctttgatcatct 461  Q
    ||||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||    
T  2928870 cacacttgtaatgagaataatataaaaactctcatcttctctatctttgattatct 2928815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 20275881 - 20275922
Alignment:
Q  265 acttggtggatgtccatccttaagtcttccaccttcctataa 306  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  20275881 acttagtggatgtccatccttaagtcttccaccttcctataa 20275922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 5350916 - 5350969
Alignment:
Q  254 atgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatc 308  Q
    |||||||||  |||| ||||||||||||||||| |||||||||||||||||||||    
T  5350916 atgaataattgacttagtggatgtccatcctta-gtcttccaccttcctataatc 5350969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 6408068 - 6408114
Alignment:
Q  399 gtaaaagcacacttgtaaagagaataatacaaaatctctcatcttct 445  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||    
T  6408068 gtaaaggcacacttgtgaagagaataatacaaaatctttcatcttct 6408114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 26997169 - 26997210
Alignment:
Q  265 acttggtggatgtccatccttaagtcttccaccttcctataa 306  Q
    |||| |||||||| ||||||||||||||||||||| ||||||    
T  26997169 acttagtggatgttcatccttaagtcttccaccttgctataa 26997210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 21587324 - 21587193
Alignment:
Q  249 gtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgcttt 348  Q
    |||| ||||||| ||||||| |||| |||||| |||||| |||||||||||||||||| ||  ||||||||| ||||| |||||| ||||||| ||||||    
T  21587324 gtgttatgaatagtaaacttagtgggtgtccacccttaa-tcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgcttt 21587226  T
Q  349 gatcattaatttgctcatttgtgtcctgtaaat 381  Q
    ||||||| | ||||||||||||||||| |||||    
T  21587225 gatcattcacttgctcatttgtgtcctataaat 21587193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 44122190 - 44122059
Alignment:
Q  249 gtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgcttt 348  Q
    |||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |  |||||||||||||||| ||| || ||||||||  ||||    
T  44122190 gtgttatgaataataagcttagtggatgtccatccttaa-tcttccaccttcctataaccaatattagtgaatgtatgcttaatggtccttaatgacttt 44122092  T
Q  349 gatcattaatttgctcatttgtgtcctgtaaat 381  Q
    ||||||| |  |||||||||||||||| |||||    
T  44122091 gatcattcacctgctcatttgtgtcctataaat 44122059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 270 - 371
Target Start/End: Complemental strand, 20463296 - 20463196
Alignment:
Q  270 gtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttg 369  Q
    |||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||| ||||||  |||||| |||| |||||||| | |||||||||||    
T  20463296 gtggatgtccattctta-gtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaaatgctgtgatcattcacttgctcatttg 20463198  T
Q  370 tg 371  Q
    ||    
T  20463197 tg 20463196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 381
Target Start/End: Complemental strand, 20458930 - 20458821
Alignment:
Q  270 gtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttg 369  Q
    |||||||||||||||||| |||||||||||||||||| ||  |||||||||||| || ||||||  |||||| || |||||||||| | |||||||||||    
T  20458930 gtggatgtccatccttaa-tcttccaccttcctataacccc-attagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcatttg 20458833  T
Q  370 tgtcctgtaaat 381  Q
    || ||| |||||    
T  20458832 tgacctataaat 20458821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 7642295 - 7642391
Alignment:
Q  257 aataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcatt 355  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||| ||  |||||||||| |||| |||||| ||||||||| |||||||||||    
T  7642295 aataataaatttagtggatgtccatctttaa-tcttccaccttcctataacccc-attagtgaatttatggttagtggtccttaattactttgatcatt 7642391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 431
Target Start/End: Complemental strand, 44126880 - 44126738
Alignment:
Q  290 cttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaatgagactca 389  Q
    ||||||||||||||| | |  ||| |||||||||||| ||| || ||||||||  ||||||||||| | ||||||||||||||||| |||||  |||  |    
T  44126880 cttccaccttcctattaccactatcagtgaatgtatgtttaatggtccttaatgactttgatcattcacttgctcatttgtgtcctataaataggaccta 44126781  T
Q  390 tattttagtgtaaaag-cacacttgtaaagagaataatacaaa 431  Q
    |||| || ||| || | ||||||||| ||||||||||||||||    
T  44126780 tattgtaatgtgaatgacacacttgtgaagagaataatacaaa 44126738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 371
Target Start/End: Original strand, 13639624 - 13639706
Alignment:
Q  289 tcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtg 371  Q
    |||||||||||||||||| | |  ||||| |||||||| |||||| |||||||||| |||||||||| | |||||||||||||    
T  13639624 tcttccaccttcctataaccttcgttagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcatttgtg 13639706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 7873934 - 7873862
Alignment:
Q  359 ttgctcatttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaa 431  Q
    ||||| |||||| || | ||||| |||||||| ||||| ||||||| |||| |||||||||||||||||||||    
T  7873934 ttgcttatttgtatcttataaataagactcatgttttaatgtaaaaacacatttgtaaagagaataatacaaa 7873862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 16221571 - 16221612
Alignment:
Q  265 acttggtggatgtccatccttaagtcttccaccttcctataa 306  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  16221571 acttagtggatgtccatccttaagtcttccactttcctataa 16221612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 20459097 - 20459180
Alignment:
Q  270 gtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcat 354  Q
    |||| ||| |||||||| ||||||||||||||| ||||||   |||||||||| ||| ||||||  |||||| ||||||||||||    
T  20459097 gtggctgttcatcctta-gtcttccaccttcctgtaatccccgttagtgaatgcatggttagtggaccttaaatgctttgatcat 20459180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 29185722 - 29185596
Alignment:
Q  254 atgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatca 353  Q
    |||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||  |||||| ||| |||| || ||| |||||||||  ||||||||    
T  29185722 atgaataataaagttggtggatgtccattcttga-tcttccaccttcctataatccccattagtaaatatatggtttgtggtccttaattcgtttgatca 29185624  T
Q  354 ttaatttgctcatttgtgtcctgtaaat 381  Q
    |  ||||||||||||||||||| |||||    
T  29185623 tccatttgctcatttgtgtcctataaat 29185596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 429
Target Start/End: Complemental strand, 12145757 - 12145654
Alignment:
Q  328 ttagtgctccttaattgctttgatcattaatttgctcattt-gtgtcctgtaaa-tgagactcatattttagtgtaaaagcacacttgtaaagagaataa 425  Q
    |||||| | ||||||| ||||||||| | | |||||||||| ||||||| |||| | |||||||| | ||||||||||| ||||||| | ||||| ||||    
T  12145757 ttagtggttcttaattactttgatcactcacttgctcattttgtgtcctataaaataagactcatttgttagtgtaaaaacacacttctgaagaggataa 12145658  T
Q  426 taca 429  Q
    ||||    
T  12145657 taca 12145654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 42129519 - 42129611
Alignment:
Q  279 catccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgt 372  Q
    ||||||||| |||||||||||||||||| || ||||||||||| |||| ||| || ||||||||| ||||||||||| | ||||||||||||||    
T  42129519 catccttaa-tcttccaccttcctataacccctattagtgaatatatggttaatgatccttaatttctttgatcattcacttgctcatttgtgt 42129611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 413
Target Start/End: Original strand, 7578539 - 7578682
Alignment:
Q  270 gtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcat-tt 368  Q
    ||||||||||||||||| |||||||||||||| ||||  |  || |||||||| ||| | |||| ||||||||| ||||||||||| | ||||| || ||    
T  7578539 gtggatgtccatcctta-gtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttatatt 7578637  T
Q  369 gtgtcctgtaaatgagactcatattttagtgtaaaagcacacttg 413  Q
    || |||| |||||  |||||||||| |||| ||||  ||||||||    
T  7578638 gtatcctataaataggactcatattatagtataaagacacacttg 7578682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 14719367 - 14719291
Alignment:
Q  369 gtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaatctctcatcttct 445  Q
    ||||||| |||||  | |||||||| ||||||||| |||||||||| ||||||||||||||||| || |||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaaagctttcatcttct 14719291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 28904091 - 28904154
Alignment:
Q  366 tttgtgtcctgtaaatgagactcatattttagtgtaaaagcacacttgtaaagagaataataca 429  Q
    |||||||| | ||||| ||| |||||||| |||||||| |||||||||||||||||||||||||    
T  28904091 tttgtgtcttataaataagattcatatttgagtgtaaatgcacacttgtaaagagaataataca 28904154  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 39865395 - 39865436
Alignment:
Q  265 acttggtggatgtccatccttaagtcttccaccttcctataa 306  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  39865395 acttagtggatgtccatccttaagtctttcaccttcctataa 39865436  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 33190496 - 33190454
Alignment:
Q  265 acttggtggatgtccatccttaagtcttccaccttcctataat 307  Q
    |||| |||||||| |||||||||||||| ||||||||||||||    
T  33190496 acttagtggatgtacatccttaagtctttcaccttcctataat 33190454  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 35339159 - 35339058
Alignment:
Q  249 gtgtcatgaataataaacttggtggatgtccatccttaagtcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgcttt 348  Q
    |||| |||||| || || || ||||||||||||| ||| |||||||||||||||||||  |  || |||||||| ||| ||| || ||||||||| ||||    
T  35339159 gtgttatgaattattaatttagtggatgtccatcatta-gtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattacttt 35339061  T
Q  349 gat 351  Q
    |||    
T  35339060 gat 35339058  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 19441291 - 19441199
Alignment:
Q  289 tcttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaat 381  Q
    |||||||||||||||||| ||  ||| || ||| |||| |||||| ||||||| || |||||||||| | ||||||||||||||||| |||||    
T  19441291 tcttccaccttcctataacccccattggtaaatctatggttagtggtccttaaatggtttgatcattcacttgctcatttgtgtcctataaat 19441199  T

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Target: scaffold0481 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 1273 - 1327
Alignment:
Q  377 taaatgagactcatattttagtgtaaaagcacacttgtaaagagaataatacaaaa 432  Q
    ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  1273 taaataagactcatattttagtgtaaaa-cacatttgtaaagataataatacaaaa 1327  T

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Target: scaffold0481; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 1039 - 1085
Alignment:
Q  335 tccttaattgctttgatcattaatttgctcatttgtgtcctgtaaat 381  Q
    ||||||||||||||| || || ||||||||||||||||||| |||||    
T  1039 tccttaattgctttgctcgttcatttgctcatttgtgtcctataaat 1085  T

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Target: scaffold1457 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1457
Description:

Target: scaffold1457; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 1072 - 1109
Alignment:
Q  252 tcatgaataataaacttggtggatgtccatccttaagt 289  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  1072 tcatgaataataaacttagtggatgttcatccttaagt 1109  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 19856 - 19952
Alignment:
Q  290 cttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaatgagac 386  Q
    |||||| |||||||||| |  |||||||||||||||  ||| |  ||||||||  ||||||||||| | ||| ||||||||||| | ||||| ||||    
T  19856 cttccatcttcctataaccactattagtgaatgtatacttaatagtccttaatgactttgatcattcacttgttcatttgtgtcatataaataagac 19952  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 30024 - 30120
Alignment:
Q  290 cttccaccttcctataatccttattagtgaatgtatgattagtgctccttaattgctttgatcattaatttgctcatttgtgtcctgtaaatgagac 386  Q
    |||||| |||||||||| |  |||||||||||||||  ||| |  ||||||||  ||||||||||| | ||| ||||||||||| | ||||| ||||    
T  30024 cttccatcttcctataaccactattagtgaatgtatacttaatagtccttaatgactttgatcattcacttgttcatttgtgtcatataaataagac 30120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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