View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752-Insertion-12 (Length: 429)
Name: NF0752-Insertion-12
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752-Insertion-12 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Complemental strand, 12287633 - 12287213
Alignment:
| Q |
6 |
cacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtatagaa |
105 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12287633 |
cacctcgaacaacaacatatgcatcctcaattacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtatagaa |
12287534 |
T |
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| Q |
106 |
tttaatagtgttgtgcacaaatgtgtgttagtactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgttatgtaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12287533 |
tttaatagtgttgtgcacaaatgtgtgttagtactttaagaatgattgtatattgctatgttcttcaatcttgttttgatggaattgaggtgttatgtaa |
12287434 |
T |
|
| Q |
206 |
taagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgtagtt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
12287433 |
taagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgacgagaaagagggaaagaaag--agagtgtaattggtgtgtagtt |
12287336 |
T |
|
| Q |
306 |
tcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtataacttgcagcacaaaacaattccttggatata |
405 |
Q |
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| T |
12287335 |
tcagtgtatttgaaatttggtttgaaaaagc-aaatatacgttttcgttgatgactttgactttgtataacttgcagcacaaaacaattccttggatata |
12287237 |
T |
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| Q |
406 |
tccgctaatacgctgtttggttga |
429 |
Q |
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| T |
12287236 |
tccgctaatacgctgtttggttga |
12287213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 6 - 382
Target Start/End: Complemental strand, 12267054 - 12266675
Alignment:
| Q |
6 |
cacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtatagaa |
105 |
Q |
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|||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| |||| |
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| T |
12267054 |
cacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccgtgatttctaatgtgcgtgaggctacacccatagtagagaa |
12266955 |
T |
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| Q |
106 |
tttaatagt-gttgtgcacaaatgtg--tgttag-tactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgttat |
201 |
Q |
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| T |
12266954 |
tttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatggatattgttatgtccttcaagtttattgtgagtgaattgaggtgttat |
12266855 |
T |
|
| Q |
202 |
gtaataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgt |
301 |
Q |
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|| ||||||||||| ||||||||||||||||||| || | ||||||||| |||||||||| |||||||||||| ||||| | ||||||||||||||||| |
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| T |
12266854 |
gttataagttgtgtaaatatataataagcttaaggtttgggattttgatatggaaagtgatgagaaagagggagagaaa-tacgagtgtaattggtttgt |
12266756 |
T |
|
| Q |
302 |
agtttcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtataacttgcag |
382 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |||||| |
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| T |
12266755 |
ggtttcaatgtaattgaaatttggtttgaaaaagcaaaatatacgttttcgttgaagactttgactttgtattagttgcag |
12266675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 6 - 382
Target Start/End: Complemental strand, 12282780 - 12282401
Alignment:
| Q |
6 |
cacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtatagaa |
105 |
Q |
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|||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| |||| |
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| T |
12282780 |
cacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccgtgatttctaatgtgcgtgaggctacacccatagtagagaa |
12282681 |
T |
|
| Q |
106 |
tttaatagt-gttgtgcacaaatgtg--tgttag-tactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgttat |
201 |
Q |
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|||||| | |||||| | ||| | |||||| | | |||||||||||| |||||| ||||| |||||| || || ||| ||||||||||||||| |
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| T |
12282680 |
tttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatggatattgttatgtccttcaagtttattgtgagtgaattgaggtgttat |
12282581 |
T |
|
| Q |
202 |
gtaataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgt |
301 |
Q |
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|| ||||||||||||||||||||||||| ||||| || | ||||||||| |||||||||| |||||||||||| ||||| | ||||||||||||||||| |
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| T |
12282580 |
gttataagttgtgtgaatatataataaggttaaggtttgggattttgatatggaaagtgatgagaaagagggagagaaa-tacgagtgtaattggtttgt |
12282482 |
T |
|
| Q |
302 |
agtttcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtataacttgcag |
382 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |||||| |
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| T |
12282481 |
ggtttcaatgtaattgaaatttggtttgaaaaagcaaaatatacgttttcgttgaagactttgactttgtattagttgcag |
12282401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 12256963 - 12256885
Alignment:
| Q |
6 |
cacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtga |
84 |
Q |
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| T |
12256963 |
cacctcgaacaacaacgtatgcatcctccgttacatgaatattttcaccagatataaccgtaatttctaatgtttgtga |
12256885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 12264355 - 12264277
Alignment:
| Q |
6 |
cacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtga |
84 |
Q |
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| T |
12264355 |
cacctcgaacaacaacgtatgcatcctccgttacatgaatattttcaccagatataaccgtaatttctaatgtttgtga |
12264277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 12270967 - 12270889
Alignment:
| Q |
6 |
cacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtga |
84 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||| ||| ||||||||||| ||||| |
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| T |
12270967 |
cacctcgaacaacaacgtatgcatcctctgttacatgaatattttctccagatataatcgtaatttctaatgtttgtga |
12270889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 12270734 - 12270659
Alignment:
| Q |
263 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
338 |
Q |
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| T |
12270734 |
gagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtatttgaattatgatttggaaaagcaa |
12270659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 12256725 - 12256650
Alignment:
| Q |
263 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
338 |
Q |
| |
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|||||| |||| ||||||||||| |||||||||||| || | |||| |||||||| | |||| ||||||||||||| |
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| T |
12256725 |
gagaaaaaggggaagaaagaaagggtgtaattggttggttggttcaatgtatttggattttgatttgaaaaagcaa |
12256650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 12264117 - 12264042
Alignment:
| Q |
263 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
338 |
Q |
| |
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|||||| |||| ||||||||||| |||||||||||| || | |||| |||||||| | |||| ||||||||||||| |
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| T |
12264117 |
gagaaaaaggggaagaaagaaagggtgtaattggttggttggttcaatgtatttggattttgatttgaaaaagcaa |
12264042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 316
Target Start/End: Complemental strand, 29197546 - 29197446
Alignment:
| Q |
215 |
tgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtat |
314 |
Q |
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| T |
29197546 |
tgaatatatattaagcttaagttttggg-ttttgatatggaaagtggtgagaaagagggaaagaaagaaagagtgtaattggtttgttgtttcggtgtat |
29197448 |
T |
|
| Q |
315 |
tt |
316 |
Q |
| |
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|| |
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| T |
29197447 |
tt |
29197446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 29197689 - 29197535
Alignment:
| Q |
6 |
cacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtatagaa |
105 |
Q |
| |
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|||||||||| ||||| |||||||||||||||| |||||||||||| |||| |||||| |||||||||||||| |||| |||| |||||| ||| | || |
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| T |
29197689 |
cacctcgaacgacaacgtatgcatcctcagttatatgaatattttcaccggttataactgttatttctaatgtgcgtgaagctatacccatagtagaaaa |
29197590 |
T |
|
| Q |
106 |
tttaatagtgttgtgcacaaatgtgtgttagtacttt-aagaatgaatgtatatt |
159 |
Q |
| |
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||| || |||||||||||| ||||| ||||||| |||||||||| |||||| |
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| T |
29197589 |
tttgatgttgttgtgcacaagaatgtgtgtgtactttaaagaatgaatatatatt |
29197535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 29197413 - 29197353
Alignment:
| Q |
369 |
tgtataacttgcagcacaaaacaattccttggatatatccgctaatacgctgtttggttga |
429 |
Q |
| |
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||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
29197413 |
tgtattacttgcagcacaagacaattccgtggatatatccgctaatacgctgtttggttga |
29197353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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