View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752-Insertion-16 (Length: 317)
Name: NF0752-Insertion-16
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752-Insertion-16 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 40599288 - 40599582
Alignment:
| Q |
7 |
agatgtatatattgtgaagtgtgatgtgatcagcttccaactagactctatatatgagatatcatcaagtcaagtccacacttttgtgtagtaacaataa |
106 |
Q |
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| T |
40599288 |
agatgtatatattgtgaagtgtgatgtgatcagcttccaactagactctatatatgagatatcatcaagtcaagtccacacttttgtgtagtaacaataa |
40599387 |
T |
|
| Q |
107 |
tgatggctatgtgattatttcatttcataggaagcttcatctataaataagaagctgatccaaacttgaactcaccaaaacttacaagaaagaaacaagt |
206 |
Q |
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| T |
40599388 |
tgatggctatgtgattattt-----cataggaagcttcatttataaataagaagctgattcaaacttgaactcaccaaaacttacaagaaagaaacaagt |
40599482 |
T |
|
| Q |
207 |
agtcaacctggtttgtttcttcaacgaaaatacagagaagatagagtggggtcctacttcaattattaatcttggttcggaaaatctgtgggcatataaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40599483 |
agtcaacctggtttgtttcttcaacgaaaatacagagaagatagaatggggtcctacttcaattattaatcttggttcggaaaatctgtgggcatataaa |
40599582 |
T |
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