View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752-Insertion-17 (Length: 266)
Name: NF0752-Insertion-17
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752-Insertion-17 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 6251107 - 6251362
Alignment:
| Q |
18 |
ctacccatgatcaatatctttcctaaacacagatccaaggttgaattcaaaaaacagaataagcatacagtaaatatatatgtgcttctctagatagtaa |
117 |
Q |
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| T |
6251107 |
ctacccattatcaatttctttcctaaacacagatccaaggttgaattcaaaaaacagaataagcatacagtaaatatatatatgcttctctagatagtaa |
6251206 |
T |
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| Q |
118 |
ataatgaag-aaagtatacagtata-atcttatattttggtac--taatttgatctttacagattgatataatttacaaagaaaggtctagtttatt--- |
210 |
Q |
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| T |
6251207 |
ataatgaagaaaagtatatagtatatatcttattttttggtactataatttgatctttaccgaccgatataatttacatagaaaaatttagtttattttc |
6251306 |
T |
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| Q |
211 |
ttcttttcatggaaaaaataggatttagttaaaaatttgtacacgattaattggtt |
266 |
Q |
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| T |
6251307 |
ttcttttcatggaaaaaataggatctagttgaaaatttgtacacgattaattggtt |
6251362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 6183722 - 6183839
Alignment:
| Q |
150 |
ttttggtactaatttgatctttacagattgatataatttacaaagaaaggtctagtttattttcttttcatgg-aaaaaataggatttagttaaaaattt |
248 |
Q |
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| T |
6183722 |
ttttggtactaatttgatcttcactgatcgatataatttacaaagaaatatctagtttattttcttttcatggaaaaaaatagaatctagttgaaaattt |
6183821 |
T |
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| Q |
249 |
gtacacgattaattggtt |
266 |
Q |
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| T |
6183822 |
gtgcacgattaatcggtt |
6183839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 6111434 - 6111482
Alignment:
| Q |
8 |
gtgttttcctctacccatgatcaatatctttcctaaacacagatccaag |
56 |
Q |
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| T |
6111434 |
gtgttttcctctacccattatcaatatctttcctaaacacagatccaag |
6111482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 6183634 - 6183675
Alignment:
| Q |
92 |
tatatatgtgcttctctagatagtaaataatgaagaaagtat |
133 |
Q |
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| T |
6183634 |
tatatatgtgcttctctagatagtaaataacgaagaaggtat |
6183675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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