View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0752-Insertion-21 (Length: 925)
Name: NF0752-Insertion-21
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752-Insertion-21 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 721; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 8 - 909
Target Start/End: Original strand, 35068191 - 35069093
Alignment:
| Q |
8 |
cttgtagggatttcaaaattaaacgaaatatttgtaccactgtgaatttttctctatccttttcttatgtggtcgtgcctaattttctagcatatct--g |
105 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
35068191 |
cttgtagggatttcaaaattaaacaaaatatttgtaccactgtgaatttttctctatccttttcttatgtggtcgtgcttaattttctagcatatctatg |
35068290 |
T |
|
| Q |
106 |
cgcaagtggctatgcaaatgcaatgagttttgtttttaacatcaacaaatgaggtggcatcactttcaatcatannnnnnngttcataattcaattcaat |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
35068291 |
cgcaagtggctatgcaaatgcaatgagttttgtttttaacatcaacaaaagaggtggcatcactttcaatcatatttttttgttcataattcaaatcaat |
35068390 |
T |
|
| Q |
206 |
acnnnnnnncagttaaaaaaccttaactaagtcttcattaccaaattatgaaactattatgacttaataaacttatttagcaatgnnnnnnntgtgagtt |
305 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35068391 |
acaaaaaaacagttaaaaaaccttaactaagtcttcattaccaaattatgaaactattatgacttaataaacttatttagcaatgaaaaaaatgtgagtt |
35068490 |
T |
|
| Q |
306 |
ttgatcttgtcctaataaggtgagtatagtgaagtacaaaggcagcaagctgtgacaaggaataagaaaaatcaaattgaaaaagataacccatttgaat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068491 |
ttgatcttgtcctaataaggtgagtatagtgaagtacaaaggcagcaagttgtgacaaggaataagaaaaatcaaattgaaaaagataacccatttgaat |
35068590 |
T |
|
| Q |
406 |
cattttggtgtgttttgatggtacaacatatttaataaaacaggatttggacaggtaagtctatctcctagcagtgtatatttgaagaataacacttaaa |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35068591 |
cattttggtgtgttttgatggtacaacatatttaataaaacaggatttggacaggtaagtctatctcctagcagtgtatatttgaagagtaacacttaaa |
35068690 |
T |
|
| Q |
506 |
aattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaaatgagaaaaacaagtatttgtagctgagcagtatttttcatatcac |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35068691 |
aattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaaatgagaaaaacaagtatttgtagctgagcagtatttttcatatcac |
35068790 |
T |
|
| Q |
606 |
tgnnnnnnnnnttgtctgatgaaaatagcagcaacggtttacatcaaaagaaaagataaagacaacattgtgtagcatgcaagaaatggtataattttcc |
705 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068791 |
tg-aaaaaaaattgtctgatgaaaatagcagcaacggtttacatcaaaagaaaagataaagacaacattgtgtagcatgcaagaaatggtataattttcc |
35068889 |
T |
|
| Q |
706 |
aaaatgtgcannnnnnnagtagtcacctaccatatgtaaagggacacaacatcacaaattattccattatatataatgttaatgtgcttggtccatactt |
805 |
Q |
| |
|
||| |||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35068890 |
aaattgtgcatttttttagtagtcacctaccatgtgtaaaaggacacagcatcacaaattattccattatatataatgttaatgtgcttggtccatactt |
35068989 |
T |
|
| Q |
806 |
aagtattgatcaaactatagaggagattaataagtgtaagggaaggattgaattgatagaaaaaattaaattgcttaagagaatggagccacctcttcta |
905 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||| |
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|
| T |
35068990 |
aagtattgatcaaactatagaggagattaataagtgtaagggaaggattgaattgacagaaaaaattcaattgcttaagagaatggagccacgttttcta |
35069089 |
T |
|
| Q |
906 |
gcaa |
909 |
Q |
| |
|
|||| |
|
|
| T |
35069090 |
gcaa |
35069093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 44 - 909
Target Start/End: Original strand, 35052332 - 35053177
Alignment:
| Q |
44 |
ccactgtgaatttttctctatccttttcttatgtggtcgtgcctaattttctagcatatct--gcgcaagtggctatgcaaatgcaatgagttttgtttt |
141 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| | | | |||||||||||||||| | |||||||||||||||| ||||||||||||| |
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|
| T |
35052332 |
ccactgtgaatttttctctgtccttttcttatgtggttgcacttgattttctagcatatctatgggcaagtggctatgcaa------tgagttttgtttt |
35052425 |
T |
|
| Q |
142 |
taacatcaacaaatgaggtggcatcactttcaatcatannnnnnng-ttcataattcaattcaatacnnnnnnncagttaaaaaaccttaactaagtctt |
240 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||| |||| ||||||||||||||||| | |
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| T |
35052426 |
taacatcaacaaaagaggtggcatcactttcaaccatatttttttggttcataattcaattccatacaagaaaacagttaaaaaaccttaa--------t |
35052517 |
T |
|
| Q |
241 |
cattaccaaattatgaaactattatgacttaataaacttatttagcaatgnnnnnnntgtgagttttgatcttgtcctaataaggtgagtatagtgaagt |
340 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35052518 |
cattaccaaattatga-----------cttaataaacttatttagcaatgcaaaaaatgtgagttttgatcttgtccaaataaggtgagtatagtgaagt |
35052606 |
T |
|
| Q |
341 |
acaaaggcagcaagctgtgacaaggaataagaaaaatcaaattgaaaaagataacccatttgaatcattttggtgtgttttgatggtacaacatatttaa |
440 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35052607 |
acaaaggcagcaaggtgtgacaaagaataagaaaaatcaaattgaaaaagataacctatttgaatcattttggtgtgttttgatggtacaacatatttaa |
35052706 |
T |
|
| Q |
441 |
taaaacaggatttggacaggtaagtctatctcctagcagtgtatatttgaagaataacacttaaaaattaaaatataaacatacaagggaaatggtggtc |
540 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052707 |
taaaacaggatttagacaggtaagtctatctcatagcggtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtc |
35052806 |
T |
|
| Q |
541 |
aagaaaaatggtaattcaaatgagaaaaacaagtatttgtagctgagcagtatttttcatatcactg-nnnnnnnnnttgtctgatgaaaatagcagcaa |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
35052807 |
aagaaaaatggtaattcaaatgagaaaaacaagcatttgtagctgagcagtatttttcatatcaccgaaaaaaaaaattgtctgatgaaaatagcagcaa |
35052906 |
T |
|
| Q |
640 |
cggtttacatcaaa-agaaaagataaagacaacattgtgtagcatgcaagaaatggtataattttccaaaatgtgcannnnnnnagtagtcacctaccat |
738 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
35052907 |
tggtttacatcaaacagaaaagataaagacaacattgtgtagcatgcaagaaatggtataattttccaaattgtgca-ttttttagtagtcacctaccat |
35053005 |
T |
|
| Q |
739 |
atgtaaagggacacaacatcacaaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagaggagattaataa |
838 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
35053006 |
gtgtaaaaggacacaacctcacaaattattccattatatataatgttaatgtgcttggt-catacttaagtattgatcaaaccatagaggagattcataa |
35053104 |
T |
|
| Q |
839 |
gtgtaagggaaggattgaattg--atagaaaaaattaaattgcttaagagaatggagccacctcttctagcaa |
909 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| || |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
35053105 |
gtgtaagggaaagattgaattgacaaagaaaaattttaattgcttaagagaatggagccacgttttctagcaa |
35053177 |
T |
|
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