View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752-Insertion-22 (Length: 462)

Name: NF0752-Insertion-22
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752-Insertion-22
NF0752-Insertion-22
[»] chr5 (7 HSPs)
chr5 (8-451)||(40644084-40644527)
chr5 (384-462)||(10650464-10650543)
chr5 (384-442)||(1657964-1658022)
chr5 (384-439)||(14245123-14245178)
chr5 (384-431)||(34980972-34981019)
chr5 (412-461)||(14953937-14953985)
chr5 (396-452)||(25627770-25627826)
[»] chr1 (10 HSPs)
chr1 (381-462)||(27739084-27739165)
chr1 (374-439)||(525127-525190)
chr1 (391-448)||(18373834-18373891)
chr1 (400-452)||(25541939-25541990)
chr1 (419-462)||(42742440-42742483)
chr1 (396-442)||(8529950-8529996)
chr1 (384-442)||(41498555-41498613)
chr1 (399-461)||(51303707-51303769)
chr1 (385-438)||(41676436-41676489)
chr1 (393-461)||(46218055-46218121)
[»] chr2 (6 HSPs)
chr2 (388-462)||(21662339-21662413)
chr2 (383-452)||(14196810-14196879)
chr2 (383-461)||(18811363-18811441)
chr2 (384-442)||(31795804-31795863)
chr2 (396-462)||(31086553-31086619)
chr2 (397-462)||(12541813-12541880)
[»] chr4 (11 HSPs)
chr4 (386-462)||(11842346-11842421)
chr4 (379-450)||(45904580-45904650)
chr4 (384-461)||(49936194-49936271)
chr4 (380-443)||(23813132-23813195)
chr4 (384-452)||(47694384-47694453)
chr4 (388-440)||(21694929-21694981)
chr4 (412-452)||(42201217-42201257)
chr4 (394-450)||(45911325-45911380)
chr4 (388-439)||(55080733-55080784)
chr4 (386-431)||(22186881-22186926)
chr4 (407-460)||(56427032-56427085)
[»] chr8 (11 HSPs)
chr8 (383-462)||(38198179-38198258)
chr8 (377-442)||(22591558-22591623)
chr8 (384-442)||(1281294-1281352)
chr8 (412-461)||(36166221-36166270)
chr8 (384-461)||(44114205-44114282)
chr8 (395-451)||(34552608-34552664)
chr8 (407-442)||(29358398-29358433)
chr8 (412-450)||(42919871-42919909)
chr8 (385-438)||(10028278-10028331)
chr8 (384-462)||(30581940-30582022)
chr8 (383-443)||(26167791-26167851)
[»] chr7 (15 HSPs)
chr7 (391-452)||(42283123-42283184)
chr7 (401-450)||(44040810-44040859)
chr7 (395-450)||(33224136-33224191)
chr7 (377-439)||(48094047-48094109)
chr7 (380-417)||(1013955-1013992)
chr7 (400-458)||(22599898-22599957)
chr7 (380-462)||(19261969-19262051)
chr7 (384-442)||(24970200-24970258)
chr7 (388-442)||(30592292-30592346)
chr7 (396-442)||(40196579-40196625)
chr7 (393-442)||(2087783-2087832)
chr7 (385-458)||(39417503-39417576)
chr7 (384-437)||(48881593-48881646)
chr7 (383-462)||(34124877-34124953)
chr7 (407-443)||(47391006-47391042)
[»] chr6 (4 HSPs)
chr6 (390-462)||(16509322-16509394)
chr6 (384-443)||(10818366-10818425)
chr6 (384-443)||(30849949-30850008)
chr6 (396-442)||(19278081-19278127)
[»] chr3 (6 HSPs)
chr3 (378-430)||(1816051-1816103)
chr3 (381-431)||(25179926-25179976)
chr3 (380-462)||(49815453-49815535)
chr3 (384-431)||(34641152-34641199)
chr3 (407-462)||(45663274-45663329)
chr3 (418-462)||(34938736-34938780)
[»] scaffold0007 (1 HSPs)
scaffold0007 (384-442)||(242367-242425)


Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 40644527 - 40644084
Alignment:
8 atgcaatgagaacatctcagctcaagatgatgaatacaaggtatcatttcagtttcaaaagtcaaattaaagatacttgttacattttggatatcattta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40644527 atgcaatgagaacatctcagctcaagatgatgaatacaaggtatcatttcagtttcaaaagtcaaattaaagatacttgttacattttggatatcattta 40644428  T
108 ctcacatgtacatgcttcatgcaggacgctatggagaaattgttgaaattcgatgttgacaatggtgacttgaaccnnnnnnncgaggatatattctgca 207  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
40644427 ctcacatacacatgtttcatgcaggacgctatggagaaattgttgaaattcgatgttgacaatggtgacttgaacctttttttcgaggatatattctgca 40644328  T
208 gttcctgatacatcataagttcataaccaaggcatttgcttatagttttcaacaaggagtgaatatatatgctttccttattgacttttttatttcctct 307  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
40644327 attcctgatacatcataagttcataaccaaggcatttgcttatagttttcaacaaggagtgtatatatatgctttccttattgacttttttatttcctct 40644228  T
308 gtctattttgtttactgcttggattcatatattaacttgtatgtttggttttttatggtatttctcgatggattttggaggggaggacttacttttctct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
40644227 gtctattttgtttactgcttggattcatatattaacttgtatgtttggttttttatggtatttcttgatggattttggaggggaggacttacttttctct 40644128  T
408 tttgaattacggacactataaaatattttttaaaatcaattaag 451  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
40644127 tttgaattacggacactataaaatcttttttaaaatcaattaag 40644084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 462
Target Start/End: Original strand, 10650464 - 10650543
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttt-taaaatcaattaagtttgattgaag 462  Q
    ||||||||||| ||||||||   |||| ||||||||||||||| |||| ||||| |||||| |||||||| |||||||||    
10650464 ggaggggaggatttactttttatttttaaattacggacactatgaaatgtttttctaaaataaattaagtgtgattgaag 10650543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 1658022 - 1657964
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    ||||||||||  |||||||||  |||| |||||||||||||||||||| ||||||||||    
1658022 ggaggggagggtttacttttcatttttaaattacggacactataaaatgttttttaaaa 1657964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 14245123 - 14245178
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatatttttta 439  Q
    ||||||||||| |||||||||| |||| ||||||||||||| | |||| |||||||    
14245123 ggaggggaggatttacttttcttttttaaattacggacactgtgaaatgtttttta 14245178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 34981019 - 34980972
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaat 431  Q
    |||||||||||||||||||||| |||| ||||| ||||| ||||||||    
34981019 ggaggggaggacttacttttcttttttaaattatggacattataaaat 34980972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 461
Target Start/End: Original strand, 14953937 - 14953985
Alignment:
412 aattacggacactataaaatattttttaaaatcaattaagtttgattgaa 461  Q
    ||||||||||||||||| || |||| ||||||||||||||| ||||||||    
14953937 aattacggacactataagatgtttt-taaaatcaattaagtgtgattgaa 14953985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 25627770 - 25627826
Alignment:
396 ttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagt 452  Q
    |||| |||||||||| ||||| | | ||||||||||  |||||||||||||||||||    
25627770 ttacctttctcttttaaattatgaatactataaaatgatttttaaaatcaattaagt 25627826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 27739084 - 27739165
Alignment:
381 tttggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    ||||||||||||| |||||||||||||||| |||||   | |||||||||| |||||||||||||||||||| |||||||||    
27739084 tttggaggggagggcttacttttctcttttaaattataaatactataaaatgttttttaaaatcaattaagtgtgattgaag 27739165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 525127 - 525190
Alignment:
374 gatggattttggaggggaggacttacttttctcttttgaattacggacactataaaatatttttta 439  Q
    ||||||||| ||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||||||    
525127 gatggatttaggaggggagga-ttacttttcttttttaaattacggaca-tataaaataattttta 525190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 18373891 - 18373834
Alignment:
391 aggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaatt 448  Q
    |||||||||||||||||| |  |||||||||| |||||||| ||||||||| ||||||    
18373891 aggacttacttttctcttatatattacggacagtataaaatgttttttaaagtcaatt 18373834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 25541939 - 25541990
Alignment:
400 ttttctcttttgaattacggacactataaaatattttttaaaatcaattaagt 452  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||||||||    
25541939 ttttctcttttaaattatagacactataaaata-tttttaaaatcaattaagt 25541990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Complemental strand, 42742483 - 42742440
Alignment:
419 gacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||    
42742483 gacactataaaatgttttttaaaataaattaagtgtgattgaag 42742440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 8529996 - 8529950
Alignment:
396 ttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    |||||||||  |||| ||||||||||||||| |||||||||||||||    
8529996 ttacttttcatttttaaattacggacactatgaaatattttttaaaa 8529950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 41498613 - 41498555
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    ||||||||||| |||||||||  |||| ||||||||||||||| |||| |||| |||||    
41498613 ggaggggaggatttacttttcatttttaaattacggacactatgaaatgttttataaaa 41498555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 461
Target Start/End: Complemental strand, 51303769 - 51303707
Alignment:
399 cttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaa 461  Q
    ||||||| |||  ||||| | |||||||||||| |||||| ||||||||||||| ||||||||    
51303769 cttttctttttaaaattatgaacactataaaatgtttttttaaatcaattaagtgtgattgaa 51303707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 41676489 - 41676436
Alignment:
385 gaggggaggacttacttttctcttttgaattacggacactataaaatatttttt 438  Q
    |||||||||  |||||||||  |||| |||||||||||||||||||| ||||||    
41676489 gaggggagggtttacttttcatttttaaattacggacactataaaatgtttttt 41676436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 46218055 - 46218121
Alignment:
393 gacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaa 461  Q
    ||||||||||||| || | |||||| || ||||||||||||||||  ||||||||||||| | ||||||    
46218055 gacttacttttcttttataaattacagagactataaaatattttt--aaatcaattaagtgtaattgaa 46218121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 462
Target Start/End: Complemental strand, 21662413 - 21662339
Alignment:
388 gggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    |||||| |||||||||||||||| || ||  |||||| |||||| ||||||||||||||||||||||||||||||    
21662413 gggaggccttacttttctcttttaaagtatagacactgtaaaatgttttttaaaatcaattaagtttgattgaag 21662339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 14196879 - 14196810
Alignment:
383 tggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagt 452  Q
    ||||||||||| ||||||||||| |||| ||||||| |||||||||||| ||||||||||| || |||||    
14196879 tggaggggagggcttacttttcttttttaaattacgaacactataaaatgttttttaaaataaactaagt 14196810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 461
Target Start/End: Original strand, 18811363 - 18811441
Alignment:
383 tggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaa 461  Q
    ||||||| | ||||||||||||| |||| |||||| |  |||||||| | ||||||||||| |||||||| ||||||||    
18811363 tggagggaatgacttacttttcttttttaaattacagtaactataaagtgttttttaaaataaattaagtgtgattgaa 18811441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 31795804 - 31795863
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactat-aaaatattttttaaaa 442  Q
    |||||||||||||||||||||  |||| ||||||||||||||| ||||  ||||||||||    
31795804 ggaggggaggacttacttttcgtttttaaattacggacactatgaaaagtttttttaaaa 31795863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 31086553 - 31086619
Alignment:
396 ttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    ||||||||||||||| ||||||  | | | |||||| |||||||||||||| ||||| |||||||||    
31086553 ttacttttctcttttaaattacatatattttaaaatgttttttaaaatcaactaagtgtgattgaag 31086619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 12541813 - 12541880
Alignment:
397 tacttttctcttttgaattacggacactataaaatattttt--taaaatcaattaagtttgattgaag 462  Q
    ||||||||| |||| ||||||||||  ||||||||||||||  |||||| ||||||||  ||||||||    
12541813 tacttttcttttttaaattacggactatataaaatattttttctaaaataaattaagtgcgattgaag 12541880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 11842346 - 11842421
Alignment:
386 aggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    |||||||||||||||||||| |||  |||||| |||||||||||||||||||| |||| |||||||| |||||||||    
11842346 aggggaggacttacttttctttttcaaattacagacactataaaatatttttt-aaatgaattaagtctgattgaag 11842421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 45904580 - 45904650
Alignment:
379 attttggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaa 450  Q
    |||||| |||||||||||||  |||||||||| ||||||||| |||||||||||  ||||||||||||||||    
45904580 attttgtaggggaggacttatatttctcttttaaattacggatactataaaata-cttttaaaatcaattaa 45904650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 49936194 - 49936271
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaa 461  Q
    |||||||||  ||| ||||||| |||| ||||||||||||||||  || |||||| ||||||||||||| ||||||||    
49936194 ggaggggagtgcttgcttttcttttttaaattacggacactatatgatgtttttttaaatcaattaagtgtgattgaa 49936271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 23813132 - 23813195
Alignment:
380 ttttggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaat 443  Q
    ||||||||| |||||||||||||||  | || |||||||||||||||||||| ||||| |||||    
23813132 ttttggaggagaggacttacttttcattgttaaattacggacactataaaatgtttttgaaaat 23813195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 452
Target Start/End: Original strand, 47694384 - 47694453
Alignment:
384 ggaggggaggacttactttt-ctcttttgaattacggacactataaaatattttttaaaatcaattaagt 452  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||| ||||  ||| |||||||||| ||||    
47694384 ggaggggagggcttactttttctcttttaaattacggacactatgaaatgctttctaaaatcaatcaagt 47694453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 21694929 - 21694981
Alignment:
388 gggaggacttacttttctcttttgaattacggacactataaaatattttttaa 440  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||  |||||||    
21694929 gggagggcttacttttcttttttaaattacggacactataaaatggtttttaa 21694981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 42201257 - 42201217
Alignment:
412 aattacggacactataaaatattttttaaaatcaattaagt 452  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
42201257 aattatggacactataaaatattttttaaaataaattaagt 42201217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 45911325 - 45911380
Alignment:
394 acttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaa 450  Q
    |||||||||||| |||| ||||||||| ||||||||||| |||||||||| ||||||    
45911325 acttacttttcttttttaaattacggatactataaaata-tttttaaaattaattaa 45911380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 55080784 - 55080733
Alignment:
388 gggaggacttacttttctcttttgaattacggacactataaaatatttttta 439  Q
    |||||||||||||||||| |||| ||||||| ||| ||||||||| ||||||    
55080784 gggaggacttacttttcttttttaaattacgaacattataaaataattttta 55080733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 22186926 - 22186881
Alignment:
386 aggggaggacttacttttctcttttgaattacggacactataaaat 431  Q
    ||||||||||| |||||||| |||| ||||||||||| ||||||||    
22186926 aggggaggactcacttttcttttttaaattacggacattataaaat 22186881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 460
Target Start/End: Complemental strand, 56427085 - 56427032
Alignment:
407 ttttgaattacggacactataaaatattttttaaaatcaattaagtttgattga 460  Q
    |||| |||||||||||||||| ||| ||| || ||||||||||||| |||||||    
56427085 ttttaaattacggacactatagaatgtttgtttaaatcaattaagtgtgattga 56427032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 383 - 462
Target Start/End: Complemental strand, 38198258 - 38198179
Alignment:
383 tggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    |||| |||||||||||||||||  |||| |||||| ||||||||||| | ||||||||||| |||||||| |||||||||    
38198258 tggatgggaggacttacttttcatttttaaattacagacactataaagtgttttttaaaatgaattaagtgtgattgaag 38198179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 22591623 - 22591558
Alignment:
377 ggattttggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    |||||||||||||||  ||||||||||||  ||| ||||| |||||||||||||||||||| ||||    
22591623 ggattttggaggggattacttacttttcttgtttaaattaaggacactataaaatatttttaaaaa 22591558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 1281352 - 1281294
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    ||||||||||| ||| |||||  |||| ||||||||||||||| |||||||||||||||    
1281352 ggaggggaggatttagttttcatttttaaattacggacactatgaaatattttttaaaa 1281294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 36166270 - 36166221
Alignment:
412 aattacggacactataaaatattttttaaaatcaattaagtttgattgaa 461  Q
    ||||||||||| |||||||||||||| ||||||||| |||| ||||||||    
36166270 aattacggacattataaaatatttttaaaaatcaatcaagtgtgattgaa 36166221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 461
Target Start/End: Complemental strand, 44114282 - 44114205
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaa 461  Q
    ||||||||||||||  |||||| |||| ||||| | |||||||||| | |||| | ||||||||||||| ||||||||    
44114282 ggaggggaggacttcattttcttttttaaattatgaacactataaactgttttcttaaatcaattaagtgtgattgaa 44114205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 34552608 - 34552664
Alignment:
395 cttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaag 451  Q
    |||||||||||||||| |||||  ||||||||| ||| ||||||||||| |||||||    
34552608 cttacttttctcttttaaattattgacactatataatgttttttaaaattaattaag 34552664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 442
Target Start/End: Original strand, 29358398 - 29358433
Alignment:
407 ttttgaattacggacactataaaatattttttaaaa 442  Q
    |||| |||||||||||||||||||||||||||||||    
29358398 ttttaaattacggacactataaaatattttttaaaa 29358433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Complemental strand, 42919909 - 42919871
Alignment:
412 aattacggacactataaaatattttttaaaatcaattaa 450  Q
    ||||||||| |||||||||||||||||||||| ||||||    
42919909 aattacggatactataaaatattttttaaaataaattaa 42919871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 10028331 - 10028278
Alignment:
385 gaggggaggacttacttttctcttttgaattacggacactataaaatatttttt 438  Q
    |||||||||  ||||||||  ||||| ||||||||||||||| |||||||||||    
10028331 gaggggagggtttactttttacttttaaattacggacactatgaaatatttttt 10028278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 462
Target Start/End: Complemental strand, 30582022 - 30581940
Alignment:
384 ggaggggaggacttacttttctcttttgaatt----acggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    |||||||||| ||||||||||| |||| ||||    |||||||||||| ||| | ||||||||  |||||||| |||||||||    
30582022 ggaggggagggcttacttttcttttttaaattacggacggacactatataatgtgttttaaaacaaattaagtgtgattgaag 30581940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 26167791 - 26167851
Alignment:
383 tggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaat 443  Q
    |||||| || |||||| |||||| |||| ||||||||||| || |||||| ||||||||||    
26167791 tggaggagatgacttaattttcttttttaaattacggacagtaaaaaataatttttaaaat 26167851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 42283184 - 42283123
Alignment:
391 aggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagt 452  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||| | |||||||| ||||    
42283184 aggacttacttttcatttttgaattacggacactatagaatattttcttaaatcaatcaagt 42283123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 44040810 - 44040859
Alignment:
401 tttctcttttgaattacggacactataaaatattttttaaaatcaattaa 450  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||||    
44040810 tttctcttttaaattacggatactataaaatagtttttaaaatcaattaa 44040859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 450
Target Start/End: Original strand, 33224136 - 33224191
Alignment:
395 cttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaa 450  Q
    |||||||||||||||| ||||   |||||||||||||||||||| |||||||||||    
33224136 cttacttttctctttttaatttttgacactataaaatatttttttaaatcaattaa 33224191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 439
Target Start/End: Complemental strand, 48094109 - 48094047
Alignment:
377 ggattttggaggggaggacttacttttctcttttgaattacggacactataaaatatttttta 439  Q
    |||||| ||||||||||| |||||||||| |||| ||||||| || ||||||||| |||||||    
48094109 ggatttaggaggggaggatttacttttcttttttaaattacgaacgctataaaatctttttta 48094047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 1013955 - 1013992
Alignment:
380 ttttggaggggaggacttacttttctcttttgaattac 417  Q
    ||||||||||||||||||||||||||||||| ||||||    
1013955 ttttggaggggaggacttacttttctcttttaaattac 1013992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 22599957 - 22599898
Alignment:
400 ttttctcttttgaattacggacactataaaatatttttt-aaaatcaattaagtttgatt 458  Q
    |||||| ||||||| || ||||| ||||||||||||||| |||||||||||||| |||||    
22599957 ttttcttttttgaactatggacattataaaatattttttaaaaatcaattaagtgtgatt 22599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 462
Target Start/End: Complemental strand, 19262051 - 19261969
Alignment:
380 ttttggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    |||||||||||||| ||||||||||  |||| |||||| ||| || |||||| ||||  ||||| |||||| | |||||||||    
19262051 ttttggaggggagggcttacttttcaattttaaattacagactctttaaaatgttttgaaaaataaattaattgtgattgaag 19261969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 24970200 - 24970258
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    |||||||| || |||||||||  |||| ||||||||| ||||| |||||||||||||||    
24970200 ggaggggatgatttacttttcatttttaaattacggatactatgaaatattttttaaaa 24970258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 30592292 - 30592346
Alignment:
388 gggaggacttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    |||||| ||||||||||| |||| |||||| |||||||||||||  |||||||||    
30592292 gggagggcttacttttcttttttaaattacagacactataaaatgatttttaaaa 30592346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 442
Target Start/End: Original strand, 40196579 - 40196625
Alignment:
396 ttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    |||||||||  ||||||||||||||||||||||||| |||| |||||    
40196579 ttacttttcatttttgaattacggacactataaaatgttttataaaa 40196625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 2087783 - 2087832
Alignment:
393 gacttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    ||||||||||||| |||| ||||||||| | ||||||||| |||||||||    
2087783 gacttacttttcttttttaaattacggatattataaaataatttttaaaa 2087832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 39417576 - 39417503
Alignment:
385 gaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgatt 458  Q
    |||||||||  |||||| ||| |||| ||||||  |||||||||||| ||||||  |||||||||||| |||||    
39417576 gaggggagggtttacttctcttttttcaattacaaacactataaaatgttttttttaatcaattaagtatgatt 39417503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 48881593 - 48881646
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttt 437  Q
    |||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||    
48881593 ggaggggatggcttacttttcttttttaaattacggacattataaaataatttt 48881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 462
Target Start/End: Complemental strand, 34124953 - 34124877
Alignment:
383 tggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    ||||||||||| || ||||||||  ||| ||||| |||||||||||||||  ||||||||| |||||||| ||| |||||    
34124953 tggaggggagggctaacttttcttcttt-aattatggacactataaaata--ttttaaaattaattaagtgtgactgaag 34124877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 47391042 - 47391006
Alignment:
407 ttttgaattacggacactataaaatattttttaaaat 443  Q
    |||| ||||||||||||||||||| ||||||||||||    
47391042 ttttaaattacggacactataaaacattttttaaaat 47391006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 16509322 - 16509394
Alignment:
390 gaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    |||| ||||||||||| ||||||||||  ||||||||||||| ||||| ||||| ||| |||| |||||||||    
16509322 gagggcttacttttcttttttgaattaaagacactataaaatgtttttaaaaataaatcaagtgtgattgaag 16509394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 10818425 - 10818366
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaat 443  Q
    ||||||||||  |||||||||  |||| ||||||||||||||| |||| |||||||||||    
10818425 ggaggggagggtttacttttcatttttaaattacggacactatgaaatgttttttaaaat 10818366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 30849949 - 30850008
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaat 443  Q
    ||||||||||| |||| ||||  |||| ||||||| | ||||||||||||||||||||||    
30849949 ggaggggaggatttacatttcgtttttaaattacgcatactataaaatattttttaaaat 30850008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 442
Target Start/End: Original strand, 19278081 - 19278127
Alignment:
396 ttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    |||||||||  |||| |||||| ||||||||||||||||||||||||    
19278081 ttacttttcatttttaaattactgacactataaaatattttttaaaa 19278127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 1816103 - 1816051
Alignment:
378 gattttggaggggaggacttacttttctcttttgaattacggacactataaaa 430  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||| |||||||    
1816103 gattttggaggggaggacttacttttctattttaaattaaggacattataaaa 1816051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 431
Target Start/End: Original strand, 25179926 - 25179976
Alignment:
381 tttggaggggaggacttacttttctcttttgaattacggacactataaaat 431  Q
    ||||||||||||||||||||||||  |||| ||||| ||||||||||||||    
25179926 tttggaggggaggacttacttttcatttttaaattatggacactataaaat 25179976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 462
Target Start/End: Original strand, 49815453 - 49815535
Alignment:
380 ttttggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    |||||||||||||| ||||||||||| |||| ||||||    |||||||||| ||||| ||||| |||||||  |||||||||    
49815453 ttttggaggggagggcttacttttcttttttaaattacaagtactataaaatgtttttaaaaataaattaagcgtgattgaag 49815535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 34641199 - 34641152
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaat 431  Q
    |||||||||| ||||||||||| |||| ||||||||||| ||||||||    
34641199 ggaggggagggcttacttttcttttttaaattacggacattataaaat 34641152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 462
Target Start/End: Complemental strand, 45663329 - 45663274
Alignment:
407 ttttgaattacggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    |||| ||||||||||| |||||||||||||||||||| |||||  | |||||||||    
45663329 ttttcaattacggacaatataaaatattttttaaaataaattatatgtgattgaag 45663274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 34938736 - 34938780
Alignment:
418 ggacactataaaatattttttaaaatcaattaagtttgattgaag 462  Q
    ||||||||||||||||||||| |||| |||||||| | |||||||    
34938736 ggacactataaaatatttttttaaatgaattaagtataattgaag 34938780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 242425 - 242367
Alignment:
384 ggaggggaggacttacttttctcttttgaattacggacactataaaatattttttaaaa 442  Q
    ||||||||||  |||||||||| |||| ||||||||||| ||||||||  |||||||||    
242425 ggaggggagggtttacttttcttttttaaattacggacattataaaatgatttttaaaa 242367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2890 times since January 2019
Visitors: 4802