View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752-Insertion-5 (Length: 875)

Name: NF0752-Insertion-5
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752-Insertion-5
NF0752-Insertion-5
[»] chr8 (21 HSPs)
chr8 (7-875)||(44141066-44141933)
chr8 (719-875)||(13384670-13384819)
chr8 (778-875)||(32927864-32927961)
chr8 (772-857)||(37684371-37684456)
chr8 (772-875)||(38868464-38868567)
chr8 (792-862)||(38537387-38537457)
chr8 (783-863)||(4662931-4663011)
chr8 (781-864)||(36200159-36200242)
chr8 (757-863)||(26668503-26668609)
chr8 (783-845)||(41318825-41318887)
chr8 (784-857)||(10367973-10368046)
chr8 (694-753)||(10367896-10367955)
chr8 (804-873)||(7244619-7244688)
chr8 (804-857)||(15677850-15677903)
chr8 (806-863)||(35494990-35495047)
chr8 (804-872)||(26100165-26100233)
chr8 (757-821)||(35525363-35525427)
chr8 (804-875)||(32994258-32994329)
chr8 (694-773)||(35494916-35494995)
chr8 (757-875)||(463129-463247)
chr8 (789-841)||(1836262-1836315)
[»] chr4 (34 HSPs)
chr4 (7-872)||(50061647-50062510)
chr4 (781-875)||(32818386-32818480)
chr4 (698-873)||(35064962-35065130)
chr4 (757-862)||(9064182-9064287)
chr4 (762-857)||(49138797-49138891)
chr4 (783-865)||(55186988-55187070)
chr4 (695-755)||(21691349-21691409)
chr4 (781-857)||(26617443-26617519)
chr4 (804-875)||(8604638-8604709)
chr4 (702-845)||(46344878-46345013)
chr4 (762-875)||(53913593-53913706)
chr4 (772-863)||(9134576-9134667)
chr4 (695-863)||(16551853-16552014)
chr4 (781-875)||(30472909-30473003)
chr4 (694-833)||(49138894-49139025)
chr4 (757-873)||(43868087-43868203)
chr4 (788-846)||(11271582-11271641)
chr4 (772-863)||(39733666-39733756)
chr4 (781-838)||(25319022-25319080)
chr4 (783-857)||(30889764-30889838)
chr4 (783-857)||(41370044-41370118)
chr4 (781-857)||(18597014-18597091)
chr4 (694-751)||(33456269-33456326)
chr4 (694-755)||(33843586-33843647)
chr4 (789-821)||(33843661-33843693)
chr4 (825-873)||(45011893-45011941)
chr4 (804-875)||(21691228-21691299)
chr4 (786-857)||(25927288-25927359)
chr4 (804-875)||(30357510-30357581)
chr4 (772-863)||(39386599-39386690)
chr4 (784-857)||(2206377-2206451)
chr4 (781-875)||(20712830-20712924)
chr4 (808-873)||(52965872-52965937)
chr4 (690-731)||(56013913-56013954)
[»] scaffold0168 (1 HSPs)
scaffold0168 (694-861)||(31721-31881)
[»] chr6 (18 HSPs)
chr6 (706-875)||(3481946-3482115)
chr6 (688-863)||(5724658-5724826)
chr6 (694-875)||(4910803-4910977)
chr6 (781-875)||(6654106-6654200)
chr6 (791-875)||(7952725-7952809)
chr6 (698-859)||(25195398-25195550)
chr6 (781-860)||(16540082-16540161)
chr6 (804-863)||(6895978-6896037)
chr6 (781-855)||(765422-765496)
chr6 (781-862)||(2234490-2234571)
chr6 (782-857)||(26280581-26280656)
chr6 (781-862)||(1485175-1485256)
chr6 (786-862)||(852512-852588)
chr6 (724-826)||(2008403-2008498)
chr6 (781-857)||(10400729-10400805)
chr6 (783-814)||(24974192-24974223)
chr6 (783-821)||(35098244-35098282)
chr6 (785-841)||(10564974-10565031)
[»] chr2 (21 HSPs)
chr2 (694-864)||(30503104-30503267)
chr2 (781-875)||(10644578-10644672)
chr2 (775-875)||(33019172-33019272)
chr2 (694-753)||(33047683-33047742)
chr2 (781-863)||(2002723-2002805)
chr2 (797-862)||(42740968-42741033)
chr2 (781-860)||(31453358-31453437)
chr2 (776-857)||(22535968-22536049)
chr2 (772-872)||(3352042-3352142)
chr2 (759-863)||(11504090-11504193)
chr2 (787-872)||(42982523-42982610)
chr2 (785-843)||(16518758-16518816)
chr2 (804-868)||(43501123-43501187)
chr2 (781-816)||(1976940-1976975)
chr2 (783-821)||(680347-680385)
chr2 (757-859)||(12037012-12037114)
chr2 (782-824)||(32777946-32777988)
chr2 (782-816)||(33502223-33502257)
chr2 (694-751)||(7629757-7629814)
chr2 (780-857)||(21659693-21659770)
chr2 (781-841)||(37561681-37561742)
[»] chr5 (24 HSPs)
chr5 (698-863)||(11647981-11648139)
chr5 (786-875)||(14299310-14299399)
chr5 (789-857)||(9818717-9818785)
chr5 (804-873)||(6951323-6951392)
chr5 (799-863)||(38845436-38845500)
chr5 (783-875)||(42858085-42858177)
chr5 (694-751)||(38845644-38845701)
chr5 (757-833)||(27374349-27374425)
chr5 (694-863)||(18851110-18851272)
chr5 (772-875)||(28110454-28110557)
chr5 (781-863)||(34250379-34250461)
chr5 (781-862)||(36639912-36639993)
chr5 (786-846)||(13171806-13171866)
chr5 (694-848)||(22226279-22226426)
chr5 (782-834)||(43268467-43268519)
chr5 (772-859)||(36290001-36290088)
chr5 (804-871)||(39097244-39097311)
chr5 (781-857)||(1105414-1105492)
chr5 (783-872)||(42439636-42439726)
chr5 (694-751)||(3043137-3043194)
chr5 (762-819)||(5468729-5468786)
chr5 (789-818)||(22572511-22572540)
chr5 (762-811)||(29922582-29922631)
chr5 (781-846)||(32980519-32980583)
[»] chr1 (29 HSPs)
chr1 (694-863)||(28083916-28084078)
chr1 (782-857)||(31362239-31362310)
chr1 (781-846)||(6021779-6021844)
chr1 (690-868)||(36780139-36780311)
chr1 (783-871)||(3016140-3016227)
chr1 (793-857)||(48549046-48549110)
chr1 (808-875)||(11049252-11049319)
chr1 (813-875)||(7524120-7524182)
chr1 (772-874)||(34387710-34387812)
chr1 (782-875)||(38797645-38797738)
chr1 (780-872)||(1514317-1514409)
chr1 (807-863)||(30557505-30557561)
chr1 (695-874)||(2099705-2099873)
chr1 (764-875)||(3416038-3416149)
chr1 (762-875)||(34721856-34721966)
chr1 (772-875)||(47321923-47322025)
chr1 (786-848)||(50571264-50571326)
chr1 (781-863)||(51500862-51500939)
chr1 (804-872)||(7790661-7790729)
chr1 (786-862)||(10324967-10325043)
chr1 (772-863)||(3909827-3909918)
chr1 (689-751)||(15478134-15478196)
chr1 (804-862)||(28287365-28287423)
chr1 (791-873)||(33733954-33734036)
chr1 (781-875)||(50569659-50569753)
chr1 (782-834)||(5268194-5268247)
chr1 (694-751)||(8130853-8130910)
chr1 (786-875)||(15986237-15986326)
chr1 (694-755)||(45660878-45660938)
[»] chr3 (22 HSPs)
chr3 (694-863)||(25359602-25359763)
chr3 (762-860)||(54596774-54596872)
chr3 (769-873)||(40736556-40736659)
chr3 (692-755)||(52141374-52141437)
chr3 (694-751)||(1290676-1290733)
chr3 (781-845)||(7717367-7717431)
chr3 (781-863)||(32523368-32523451)
chr3 (781-862)||(35058336-35058417)
chr3 (786-862)||(37335063-37335139)
chr3 (781-848)||(1441424-1441491)
chr3 (782-864)||(44771670-44771752)
chr3 (694-751)||(3845245-3845302)
chr3 (694-751)||(52363960-52364017)
chr3 (784-872)||(35264430-35264518)
chr3 (764-812)||(48410891-48410939)
chr3 (782-821)||(30301069-30301108)
chr3 (804-859)||(35058065-35058120)
chr3 (781-840)||(41115413-41115472)
chr3 (804-871)||(52364049-52364116)
chr3 (781-821)||(38022410-38022451)
chr3 (791-856)||(40147885-40147950)
chr3 (785-862)||(44958635-44958712)
[»] chr7 (15 HSPs)
chr7 (786-863)||(15903558-15903635)
chr7 (762-862)||(27571818-27571918)
chr7 (757-873)||(41386833-41386949)
chr7 (762-861)||(22195820-22195919)
chr7 (786-863)||(40491558-40491635)
chr7 (769-873)||(35772221-35772325)
chr7 (783-862)||(28725081-28725160)
chr7 (781-862)||(5489875-5489956)
chr7 (781-838)||(36270955-36271012)
chr7 (781-841)||(40422767-40422828)
chr7 (781-857)||(44856843-44856917)
chr7 (782-862)||(30182325-30182404)
chr7 (694-751)||(46325570-46325627)
chr7 (783-821)||(45004997-45005035)
chr7 (804-845)||(17111855-17111896)
[»] scaffold0314 (1 HSPs)
scaffold0314 (695-751)||(17322-17378)
[»] scaffold0197 (1 HSPs)
scaffold0197 (694-755)||(31544-31605)


Alignment Details
Target: chr8 (Bit Score: 762; Significance: 0; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 7 - 875
Target Start/End: Complemental strand, 44141933 - 44141066
Alignment:
Q  7 aatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgcta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141933 aatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgcta 44141834  T
Q  107 tgcttagttgaagatgttccgaccgttgcatcatcctccagcatagcttctcgatcttttactccatacaagtccatacatccaagaacttacaggacac 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141833 tgcttagttgaagatgttccgaccgttgcatcatcccccagcatagcttctcgatcttttactccatacaagtccatacatccaagaacttacaggacac 44141734  T
Q  207 tgagacatgattcaagagcgccccctgcatgttctccatcagcgcttgttccacagcagagatcaaatatcattcgaagccatggtaatcagggaaactg 306  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141733 agagacatgattcaagagcgccccctgcatgttctccatcagcgcttgttccacagcagagatcaaatatcattcgaagccatggtaatcagggaaactg 44141634  T
Q  307 gctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacggttctcgctatacaagcctgatgatattggttctgcg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141633 gctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacggttctcgctatacaagcctgatgatattggttctgcg 44141534  T
Q  407 aataagaaccagaat-nnnnnnnnnnnntcaagaaaggccgagctaaatgagctcagattctatcgtttgaaggcaaaacaaaagatgtattctcctaat 505  Q
    |||||||||||||||             |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44141533 aataagaaccagaataaaaagaaaaaaatcaagaaaggccaagctaaatgagctcagattctttcgtttgaaggcaaaacaaaagatgtattctcctaat 44141434  T
Q  506 ccagaagttagaattcgctataagcttcaaaaggttggatttctttgtaatactaattttttaagttcaaagctttatttcctgtagcgattgcctgtac 605  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  44141433 ccagaagttaggattcgctataagcttgaaaaggttggatttctttgtaatactaa-tttttaagttcaaagctttatttcctgtagcgattgcttgtac 44141335  T
Q  606 ttttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttacccgtttgcttgtattcttgtacgactttgtatatgtttggttc 705  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44141334 -tttgcttcagctgcttggttgttgttactgatgatttacttataggacaattttacccgttagcttgtattcttgtacgactttgtatatgtttggttc 44141236  T
Q  706 cacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaa 805  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141235 cacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaa 44141136  T
Q  806 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  44141135 ttgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatagt 44141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 719 - 875
Target Start/End: Complemental strand, 13384819 - 13384670
Alignment:
Q  719 accaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttg 818  Q
    |||| |||||||||||||||| |||||||||||||||       ||||| || |||||||| ||| |||||  || |  ||||||||||||||||| |||    
T  13384819 accataattgattttggaggtgtagaattgattctga-------catgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttg 13384727  T
Q  819 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||| ||  ||||||| |||||||||||||| |||||||||||||| || ||||||||    
T  13384726 aagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagt 13384670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 778 - 875
Target Start/End: Original strand, 32927864 - 32927961
Alignment:
Q  778 tccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||||||||||||||||| | | |||||||||||||||| ||||||||||| ||||||||| |||| || ||||| ||||| || ||||||||    
T  32927864 tccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagt 32927961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 772 - 857
Target Start/End: Original strand, 37684371 - 37684456
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||| | ||||||||    
T  37684371 ttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgatttt 37684456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 772 - 875
Target Start/End: Original strand, 38868464 - 38868567
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 871  Q
    |||||||| |||| |||||||  |||||| |||||||||||||||||||| || |||||||| |||||| ||||| | |||||||||||||| || ||||    
T  38868464 ttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaattta 38868563  T
Q  872 tagt 875  Q
    ||||    
T  38868564 tagt 38868567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 792 - 862
Target Start/End: Complemental strand, 38537457 - 38537387
Alignment:
Q  792 ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||| ||||||||||||||||||||||||    
T  38537457 ttttgcctccaaaattgtttctacttgaagctagaaactgtaccttctgattctagagttgattttcacac 38537387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 783 - 863
Target Start/End: Complemental strand, 4663011 - 4662931
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    ||||||||||||||| |||  |||| ||||||||||||| ||||||||||| |||||| ||||||| |||||||| |||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacaca 4662931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 781 - 864
Target Start/End: Complemental strand, 36200242 - 36200159
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 864  Q
    |||||||||| || || ||||| ||||||||| ||||||||||| |||||||   ||||||||||||| |||||||||||||||    
T  36200242 agtagaattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 36200159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 757 - 863
Target Start/End: Original strand, 26668503 - 26668609
Alignment:
Q  757 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 856  Q
    ||||||||||| ||||| ||||| ||||||||||||| |||||||| |||||||||||||| ||  ||  |||||||  |||| |||||| | ||||||     
T  26668503 ttctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattctataattgattc 26668602  T
Q  857 tcacaca 863  Q
    |||||||    
T  26668603 tcacaca 26668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 783 - 845
Target Start/End: Complemental strand, 41318887 - 41318825
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 845  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||    
T  41318887 tagaatttattttgcctttaaaattgattctacttgaagttagaatttgtacattttgattct 41318825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 784 - 857
Target Start/End: Original strand, 10367973 - 10368046
Alignment:
Q  784 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    ||||||||||| ||||||| ||||| |||||||||| | ||||||||| | |||||||||||||| || |||||    
T  10367973 agaattgatttcgcctccacaattggttctacttgaggctaggatttgcagcttttgattctagaattcatttt 10368046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 694 - 753
Target Start/End: Original strand, 10367896 - 10367955
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 753  Q
    |||||||||||| |||||||||||  |||||||||||| ||||| | |||||||||||||    
T  10367896 tatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgattct 10367955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 804 - 873
Target Start/End: Complemental strand, 7244688 - 7244619
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 873  Q
    |||||||||||||||||  || ||| ||||  ||||||||||||| ||||||||||| || |||||||||    
T  7244688 aattgattctacttgaaactaagatatgtagtttttgattctagaattgattttcacgcacaattttata 7244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 804 - 857
Target Start/End: Complemental strand, 15677903 - 15677850
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||||||||||||||| |||||||| || ||||||||| |||| ||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgatttt 15677850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 806 - 863
Target Start/End: Original strand, 35494990 - 35495047
Alignment:
Q  806 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| ||| |||| |||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacaca 35495047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 804 - 872
Target Start/End: Complemental strand, 26100233 - 26100165
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttat 872  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||| | |||||||| ||||| || |||||    
T  26100233 aattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttat 26100165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 821
Target Start/End: Original strand, 35525363 - 35525427
Alignment:
Q  757 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 821  Q
    |||| |||||| ||||||||||| ||||||||||||| | || ||| |||||||| |||||||||    
T  35525363 ttctgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaag 35525427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 875
Target Start/End: Complemental strand, 32994329 - 32994258
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||||||||||||||||| || ||||| || ||||||| |||||| |||||||| | ||| || ||||||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagt 32994258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 773
Target Start/End: Original strand, 35494916 - 35494995
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgatt 773  Q
    ||||||||| |||||||||| |||  |||  ||||||| |||||||  | |||||||||| ||||||||||||| |||||    
T  35494916 tatgtttgggtccacttctaaaggggccatgattgattctggaggtgcacaattgattcttagttctaacatgtttgatt 35494995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 757 - 875
Target Start/End: Complemental strand, 463247 - 463129
Alignment:
Q  757 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 856  Q
    |||||| |||| || |||||||| ||||||||||||||||  |  | |||| |||||| |||||  || ||||||||  || |||||||||| || ||||    
T  463247 ttctaatatgtttggttgttgtctagtagaattgattttgtttttagaattaattctatttgaaactaagatttgtagtttatgattctagaatttattt 463148  T
Q  857 tcacacataattttatagt 875  Q
    ||||| | || ||||||||    
T  463147 tcacaaagaaatttatagt 463129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 841
Target Start/End: Complemental strand, 1836315 - 1836262
Alignment:
Q  789 tgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 841  Q
    |||||||||||| |||||||||||| |||||||| |||||| |||| |||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 762; Significance: 0; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 7 - 872
Target Start/End: Complemental strand, 50062510 - 50061647
Alignment:
Q  7 aatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgcta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  50062510 aatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcacaatgcagatatagtttattctggcta 50062411  T
Q  107 tgcttagttgaagatgttccgaccgttgcatcatcctccagcatagcttctcgatcttttactccatacaagtccatacatccaagaacttacaggacac 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50062410 tgcttagttgaagatgttccgaccgttgcatcatcccccagcatagcatctcgatcttttactcaatacaagtccatacatccaagaacttacaggacac 50062311  T
Q  207 tgagacatgattcaagagcgccccctgcatgttctccatcagcgcttgttccacagcagagatcaaatatcattcgaagccatggtaatcagggaaactg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50062310 tgagacatgattcaagagcgccccctgcatgttctccatcagcgcttgttccacagcagagatcaaatatcattcgaagccatggtaatcagggaaactg 50062211  T
Q  307 gctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacggttctcgctatacaagcctgatgatattggttctgcg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50062210 gctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacggttctcgctatacaagcctgatgatattggttctgcg 50062111  T
Q  407 aataagaaccagaatnnnnnnnnnnnntcaagaaaggccgagctaaatgagctcagattctatcgtttgaaggcaaaacaaaagatgtattctcctaatc 506  Q
    |||||||||||||||            |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50062110 aataagaaccagaataaaaagaaaaaatcaagaaaggccaagctaaatgagctcagattctttcgtttgaaggcaaaacaaaagatgtattctcctaatc 50062011  T
Q  507 cagaagttagaattcgctataagcttcaaaaggttggatttctttgtaatactaattttttaagttcaaagctttatttcctgtagcgattgcctgtact 606  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||     
T  50062010 cagaagttaggattcgctataagcttgaaaaggttggatttctttgtaatactaa-tttttaagttcaaagctttatttcctgtagcgattgcttgtac- 50061913  T
Q  607 tttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttacccgtttgcttgtattcttgtacgactttgtatatgtttggttcc 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061912 tttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttacccgtttgcttgtattcttgtacgactttgtatatgtttggttcc 50061813  T
Q  707 acttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaat 806  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061812 acttctagaggaaccaaaattgattctggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaat 50061713  T
Q  807 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttat 872  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  50061712 tgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttat 50061647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 781 - 875
Target Start/End: Complemental strand, 32818480 - 32818386
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||| ||||||||  |||| || ||||||||    
T  32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagt 32818386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 698 - 873
Target Start/End: Original strand, 35064962 - 35065130
Alignment:
Q  698 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 797  Q
    ||||||||||||||| ||||   ||||||||||| ||||||| ||||||||||| |||       ||| | || ||| | || |||||||||||||||||    
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatga-------catttttggttgctttcgagtagaattgattttgc 35065054  T
Q  798 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 873  Q
    ||| | |||||||| ||||||||| ||| ||||||  |||||||||||||| |||||||| ||||| || ||||||    
T  35065055 ctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttata 35065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 757 - 862
Target Start/End: Original strand, 9064182 - 9064287
Alignment:
Q  757 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 856  Q
    ||||||||||| || |||||||| | ||||||| | |||||| ||| |||||||||||||||||  ||| |||||||  ||||||||||||| |||||||    
T  9064182 ttctaacatgtttggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattt 9064281  T
Q  857 tcacac 862  Q
    ||||||    
T  9064282 tcacac 9064287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 762 - 857
Target Start/End: Complemental strand, 49138891 - 49138797
Alignment:
Q  762 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||| || ||||| || |||| ||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||| | ||||||||    
T  49138891 acatgtttggttgttttcaagtaaaattgattttgcctccaaactt-attctacttgaagctaggatttgtaacttttgattctaaaattgatttt 49138797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 865
Target Start/End: Complemental strand, 55187070 - 55186988
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacata 865  Q
    ||||||| ||| | ||| || |||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||    
T  55187070 tagaattaattctaccttcagaattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacata 55186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 695 - 755
Target Start/End: Complemental strand, 21691409 - 21691349
Alignment:
Q  695 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 755  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctga 21691349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 781 - 857
Target Start/End: Original strand, 26617443 - 26617519
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| || |||| ||||||||| || | ||||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattataaaattgatttt 26617519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 804 - 875
Target Start/End: Complemental strand, 8604709 - 8604638
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||||||||||||||||| || |||||||| |||| ||||||||| |||||||||||||| || ||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagt 8604638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 702 - 845
Target Start/End: Complemental strand, 46345013 - 46344878
Alignment:
Q  702 gttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctcc 801  Q
    ||||||||||||||||  |||||||||||| ||||||| || |||| |||||||       ||||| || ||| | || |||| ||||||||||||||||    
T  46345013 gttccacttctagagggcccaaaattgattatggaggtgtataattaattctga-------catgtttggttgctttcaagtataattgattttgcctcc 46344921  T
Q  802 aaaattgattctacttgaagttaggatttgtaccttttgattct 845  Q
    | |||| ||||||||||||||||| ||||  | |||||||||||    
T  46344920 ataatt-attctacttgaagttagaatttccagcttttgattct 46344878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 762 - 875
Target Start/End: Complemental strand, 53913706 - 53913593
Alignment:
Q  762 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 861  Q
    |||||| || |||||||| |||||||||||||||||||  | |||||||| ||||| ||| || ||||| |   || |||||||| | ||||||||||||    
T  53913706 acatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgattctataattgattttcaca 53913607  T
Q  862 cataattttatagt 875  Q
    ||||| ||||||||    
T  53913606 cataaatttatagt 53913593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 863
Target Start/End: Original strand, 9134576 - 9134667
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    ||||| || ||| ||||||||||| | |||| ||||||| |||||||||| ||  ||||||| ||||||||| |||| ||||||||||||||    
T  9134576 ttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacaca 9134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 695 - 863
Target Start/End: Original strand, 16551853 - 16552014
Alignment:
Q  695 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattt 794  Q
    ||||||||||||||||  ||||  | ||||||||||||| ||||| ||||||||||||||       |||||| || ||| |||| | ||||  |||||     
T  16551853 atgtttggttccactttcagagagatcaaaattgattttagaggtgtagaattgattctg-------acatgtatggttgctgtcgaatagagctgattc 16551945  T
Q  795 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||| |  || |||||| ||||||| |||||||||||  ||||  ||||||| ||||||||||||||    
T  16551946 tgcctctaggatggattctccttgaagctaggatttgtagtttttagttctagaattgattttcacaca 16552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 781 - 875
Target Start/End: Original strand, 30472909 - 30473003
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||| |||||  || ||||||||||| ||||| ||||||| |||||||  |||||||| |||| |||||||||||| |||  ||||||||    
T  30472909 agtagaattaattttatcttcaaaattgattttacttcaagttagaatttgtagtttttgattttagaattgattttcacatatatatttatagt 30473003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 833
Target Start/End: Complemental strand, 49139025 - 49138894
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 793  Q
    |||||||||||||||||||| ||   |||||||||||| | ||||| ||||||||||||||       |||||| || ||||| || |||| ||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctg-------acatgtttggttgttttcaagtaaaattgatt 49138933  T
Q  794 ttgcctccaaaattgattctacttgaagttaggatttgta 833  Q
     ||||| |||  ||| |||||||||||| |||||||||||    
T  49138932 gtgcctgcaagcttg-ttctacttgaagataggatttgta 49138894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 873
Target Start/End: Original strand, 43868087 - 43868203
Alignment:
Q  757 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 856  Q
    ||||||||||| || ||| | || ||||||||| |||||| ||||| ||||||||||| ||||| ||| |||||||| ||||| | || | |||| ||||    
T  43868087 ttctaacatgtttggttgctttctagtagaattaattttgtctccacaattgattctatttgaaattaagatttgtagcttttaactcaaaagttaattt 43868186  T
Q  857 tcacacataattttata 873  Q
    | ||| |||| ||||||    
T  43868187 ttacatataaatttata 43868203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 788 - 846
Target Start/End: Complemental strand, 11271641 - 11271582
Alignment:
Q  788 ttgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattcta 846  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| ||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagtcta 11271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 863
Target Start/End: Complemental strand, 39733756 - 39733666
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    ||||| || |||| |||| ||| |||||||| ||||||||||||||| |||||  ||||||| ||||||||| |||| |||||| |||||||    
T  39733756 ttgttatcaagtataatttattctgcctccataattgattctacttg-agttacaatttgtagcttttgattgtagaattgattatcacaca 39733666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 781 - 838
Target Start/End: Original strand, 25319022 - 25319080
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttt 838  Q
    |||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||    
T  25319022 agtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 783 - 857
Target Start/End: Original strand, 30889764 - 30889838
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||||||||||| ||| | ||||||||||||||| | ||| ||||||||  |||||||| |||| ||||||||    
T  30889764 tagaattgattttgtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattgatttt 30889838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 783 - 857
Target Start/End: Complemental strand, 41370118 - 41370044
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||||||||||  ||| | | ||||||||||||||||||||||||| ||  |||| |||||||| ||||||||    
T  41370118 tagaattgattttaactctagagttgattctacttgaagttaggatttatagttttttattctagacttgatttt 41370044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 781 - 857
Target Start/End: Original strand, 18597014 - 18597091
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||| |||||||||| |||||| |||||||||| |||||||| ||  ||||| |||||||||||||| | ||||||||    
T  18597014 agtaaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 751
Target Start/End: Original strand, 33456269 - 33456326
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    |||||||||||||||||||||||| || | ||||||||||| | || |||||||||||    
T  33456269 tatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgatt 33456326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 33843586 - 33843647
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 755  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||| ||||||| |||||||    
T  33843586 tatgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctga 33843647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 789 - 821
Target Start/End: Original strand, 33843661 - 33843693
Alignment:
Q  789 tgattttgcctccaaaattgattctacttgaag 821  Q
    |||||||||||||||||||||||||||||||||    
T  33843661 tgattttgcctccaaaattgattctacttgaag 33843693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 825 - 873
Target Start/End: Original strand, 45011893 - 45011941
Alignment:
Q  825 ggatttgtaccttttgattctagagttgattttcacacataattttata 873  Q
    ||||||||| |||||||||||||| |||||||||||||| || ||||||    
T  45011893 ggatttgtagcttttgattctagaattgattttcacacacaaatttata 45011941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 875
Target Start/End: Complemental strand, 21691299 - 21691228
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||| |||||||  || |||||||| |||||| || |||| |||||||||||||| || ||||||||    
T  21691299 aattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacacacaaatttatagt 21691228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 786 - 857
Target Start/End: Original strand, 25927288 - 25927359
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||||| |||||||| ||||||||||| ||| ||||| |||||||| ||| |||||  ||| ||||||||    
T  25927288 aattgattatgcctccataattgattctatttggagttaagatttgtagcttatgatttcagaattgatttt 25927359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 875
Target Start/End: Original strand, 30357510 - 30357581
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||||||||||||||||| |  |||||||| ||||||||| || | |||||||| ||||| || ||||||||    
T  30357510 aattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttatagt 30357581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 863
Target Start/End: Original strand, 39386599 - 39386690
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||| | ||||||||||||| || ||| |||||||||||||||| ||| ||  |||| || | ||| |||||| | ||||||||||||||    
T  39386599 ttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataattgattttcacaca 39386690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 784 - 857
Target Start/End: Complemental strand, 2206451 - 2206377
Alignment:
Q  784 agaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||||||||| |||||||||||||||||| ||||||| ||  | ||| | |||||||||||||  ||||||||    
T  2206451 agaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttt 2206377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 781 - 875
Target Start/End: Complemental strand, 20712924 - 20712830
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||| ||||||||||||||||  ||  |||||||||||||| ||  |||||||  |||| |||  ||| |||||||||||||| |||||| ||||    
T  20712924 agtaaaattgattttgcctcccgaaacgattctacttgaagctaaaatttgtagttttttattgaagaattgattttcacacacaattttgtagt 20712830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 808 - 873
Target Start/End: Complemental strand, 52965937 - 52965872
Alignment:
Q  808 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 873  Q
    |||||||||||||||||  |||| || |||||||||||| | |||||| | |||||||| ||||||    
T  52965937 gattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttata 52965872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 731
Target Start/End: Complemental strand, 56013954 - 56013913
Alignment:
Q  690 tgtatatgtttggttccacttctagaggaaccaaaattgatt 731  Q
    ||||||||||||||||| |||||||| |||||| ||||||||    
T  56013954 tgtatatgtttggttcctcttctagaagaaccataattgatt 56013913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 694 - 861
Target Start/End: Original strand, 31721 - 31881
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 793  Q
    |||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||||||||       ||||| || |||||||| |||| ||||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctga-------catgtttggttgttgtcgagtaaaattgatt 31813  T
Q  794 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 861  Q
     ||||||||||||||||| ||||||||| ||||||||||| ||||||||| | || ||||||||||||    
T  31814 ctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcaca 31881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 706 - 875
Target Start/End: Original strand, 3481946 - 3482115
Alignment:
Q  706 cacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaa 805  Q
    ||||| |||||| | || |||||||| || | || |||||||||||||||||| | |||||| |||||||||||  |||||||||||| || ||  | ||    
T  3481946 cacttttagagggatcataattgattatgtatgtgtagaattgattctgagttatgacatgtttgattgttgtcaggtagaattgattctgtctttagaa 3482045  T
Q  806 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||||| |||||||||||| |||||||| | ||||||| |||| |||||||||||||| || ||||||||    
T  3482046 ttgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagt 3482115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 688 - 863
Target Start/End: Complemental strand, 5724826 - 5724658
Alignment:
Q  688 tttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaa 787  Q
    ||||| ||||||||||||||||||||||||  |||||||| ||| | || || |||||||||||||||       ||||| ||  || | ||  ||||||    
T  5724826 tttgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctga-------catgtttggatgctttcaggtagaa 5724734  T
Q  788 ttgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| |||||    
T  5724733 ttgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacaca 5724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 694 - 875
Target Start/End: Original strand, 4910803 - 4910977
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 793  Q
    ||||||||||||||||| |||||  || | |||||||| || | || |||||||||||||||       ||||| || |||| ||| | |||||||||||    
T  4910803 tatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctga-------catgtttggttgtcgtcaattagaattgatt 4910895  T
Q  794 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
     |||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||| | || ||||||||    
T  4910896 ctgcctcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagt 4910977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 781 - 875
Target Start/End: Complemental strand, 6654200 - 6654106
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||||||||| ||| || |||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || ||||||||    
T  6654200 agtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagt 6654106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 791 - 875
Target Start/End: Complemental strand, 7952809 - 7952725
Alignment:
Q  791 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||||||||||| |||||||||||||  |||||||||| |||||||||||||| |||  ||||||||| || ||||||||    
T  7952809 attttgcctccaaaatttattctacttgaagcgaggatttgtagcttttgattctagaattgggtttcacacacaaatttatagt 7952725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 698 - 859
Target Start/End: Complemental strand, 25195550 - 25195398
Alignment:
Q  698 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 797  Q
    |||||||||||||||||||||||||||||||||| |||| || || |||||||||||       |||||| || ||| | || |||| |||||||| |||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctg-------acatgtttggttgctatcgagtataattgattctgc 25195458  T
Q  798 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttca 859  Q
    ||||  ||||||||||||||||||   |||||||||  |||| |||||| | ||||||||||    
T  25195457 ctccggaattgattctacttgaag--cggatttgtagtttttcattctataattgattttca 25195398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 781 - 860
Target Start/End: Original strand, 16540082 - 16540161
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcac 860  Q
    |||| |||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||| | || |||| ||||||    
T  16540082 agtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcac 16540161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 804 - 863
Target Start/End: Complemental strand, 6896037 - 6895978
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatttattttcgcaca 6895978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 781 - 855
Target Start/End: Complemental strand, 765496 - 765422
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 855  Q
    ||||||| || ||||| ||| | |||||||||||||||||| || |||||||| |||||||||||||| ||||||    
T  765496 agtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 862
Target Start/End: Original strand, 2234490 - 2234571
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||  |  || | |||||||||||||| |||||||| ||||    
T  2234490 agtagaattgattttgccttcaaaattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattttaacac 2234571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 782 - 857
Target Start/End: Original strand, 26280581 - 26280656
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||| |||||||  ||||||||| | | ||||||||    
T  26280581 gtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttt 26280656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 781 - 862
Target Start/End: Complemental strand, 1485256 - 1485175
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    ||||||||| |||||||||  | |||||||||||||||||  ||| | ||| | |||||||||||||| |||||||| ||||    
T  1485256 agtagaattaattttgcctttagaattgattctacttgaatctagaaattggagcttttgattctagaattgattttaacac 1485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 862
Target Start/End: Original strand, 852512 - 852588
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    |||| |||||||||||| ||||||||| |||||||| ||| | |||||  || |||||||||| |||||||| ||||    
T  852512 aatttattttgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacac 852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 724 - 826
Target Start/End: Complemental strand, 2008498 - 2008403
Alignment:
Q  724 aattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtt 823  Q
    |||||||||||||||| |||||||| ||||||       ||||| |||||||| || ||||||||| |||||| ||||| |||  ||||||||||||| |    
T  2008498 aattgattttggaggtgtagaattgtttctga-------catgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagct 2008406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 781 - 857
Target Start/End: Complemental strand, 10400805 - 10400729
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||||||| ||||||| | | |||| |||||| ||||||||||||||| || | |||||||||| | ||||||||    
T  10400805 agtagaattgtttttgccactagaattaattctagttgaagttaggatttctagcctttgattctaaaattgatttt 10400729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 814
Target Start/End: Original strand, 24974192 - 24974223
Alignment:
Q  783 tagaattgattttgcctccaaaattgattcta 814  Q
    ||||||||||||||||||||||||||||||||    
T  24974192 tagaattgattttgcctccaaaattgattcta 24974223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 821
Target Start/End: Complemental strand, 35098282 - 35098244
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaag 821  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  35098282 tagaattgattttgcctacaaaattgattctaattgaag 35098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 841
Target Start/End: Complemental strand, 10565031 - 10564974
Alignment:
Q  785 gaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttga 841  Q
    ||||| |||||||||| ||| | ||||||| ||||||||||||||||||| |||||||    
T  10565031 gaatttattttgcctctaaattcgattctaacttgaagttaggatttgtagcttttga 10564974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 694 - 864
Target Start/End: Original strand, 30503104 - 30503267
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 793  Q
    |||| ||||||||||||||| |||   |||||||||||||||| || |||||||||||||       |||||||  ||||| | || || |||| |||||    
T  30503104 tatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgattct-------aacatgttcgattgatttcaagaagaaatgatt 30503196  T
Q  794 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 864  Q
    ||||||||||||||||||||||||||||  |||||| ||| |||||||||| ||| |||||||| ||||||    
T  30503197 ttgcctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacat 30503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 781 - 875
Target Start/End: Original strand, 10644578 - 10644672
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||  |||| ||| |||| || | ||||| |||||| ||||||||    
T  10644578 agtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtagtttttcattatagaattaactttcatacataaatttatagt 10644672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 775 - 875
Target Start/End: Complemental strand, 33019272 - 33019172
Alignment:
Q  775 ttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatag 874  Q
    ||||| |||| |||||||| |||||| | |||||||| || |||||| ||| ||||||| |||||| || |||| ||||||||||||||||| |||||||    
T  33019272 ttgtcgagtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatag 33019173  T
Q  875 t 875  Q
    |    
T  33019172 t 33019172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 753
Target Start/End: Complemental strand, 33047742 - 33047683
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 753  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattct 33047683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 781 - 863
Target Start/End: Complemental strand, 2002805 - 2002723
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||||||||  |||| |||||| | |||||||| |||||    
T  2002805 agtagaattgattttgcctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgatttttacaca 2002723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 797 - 862
Target Start/End: Original strand, 42740968 - 42741033
Alignment:
Q  797 cctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    |||||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||    
T  42740968 cctccataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacac 42741033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 781 - 860
Target Start/End: Original strand, 31453358 - 31453437
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcac 860  Q
    ||||||||| |||||||||| | |||||||||||||||||| ||  |||||| ||||||||||||  | |||||||||||    
T  31453358 agtagaatttattttgcctctataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattttcac 31453437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 776 - 857
Target Start/End: Original strand, 22535968 - 22536049
Alignment:
Q  776 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||| |||||||||||||||||||  | ||||||||||||||||| |||| ||||| | ||||||||| |||| || |||||    
T  22535968 tgtcaagtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttt 22536049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 872
Target Start/End: Original strand, 3352042 - 3352142
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 871  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  3352042 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 3352141  T
Q  872 t 872  Q
    |    
T  3352142 t 3352142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 863
Target Start/End: Complemental strand, 11504193 - 11504090
Alignment:
Q  759 ctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttc 858  Q
    ||||||||| |||| |||||  |||| || ||||| | |||||||||||||||||||   |||||||||||||||  |||||||| |||| ||| |||||    
T  11504193 ctaacatgtttgatagttgttgagtataactgattctacctccaaaattgattctaccgaaagttaggatttgtagtttttgattatagaattg-ttttc 11504095  T
Q  859 acaca 863  Q
    |||||    
T  11504094 acaca 11504090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 872
Target Start/End: Original strand, 42982523 - 42982610
Alignment:
Q  787 attgattttgcctccaaaatt--gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttat 872  Q
    |||||||||||||||| ||||  |||||||||||||| ||| | ||||| |||||||||| ||| |||||||| ||||| || |||||    
T  42982523 attgattttgcctccagaattttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttat 42982610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 785 - 843
Target Start/End: Original strand, 16518758 - 16518816
Alignment:
Q  785 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgatt 843  Q
    |||||| |||||| |||| ||||||||||||| |||| ||||||||||| |||||||||    
T  16518758 gaattggttttgcttccagaattgattctactagaagataggatttgtagcttttgatt 16518816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 804 - 868
Target Start/End: Original strand, 43501123 - 43501187
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 868  Q
    |||||||||||||||||  ||||||||||| ||||||||| |||| |||||| | ||||| ||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacacaaaatt 43501187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 781 - 816
Target Start/End: Complemental strand, 1976975 - 1976940
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctact 816  Q
    |||||||||||||||| |||||||||||||||||||    
T  1976975 agtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 821
Target Start/End: Complemental strand, 680385 - 680347
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaag 821  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  680385 tagaactgattttgcctccagaattgattctacttgaag 680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 757 - 859
Target Start/End: Original strand, 12037012 - 12037114
Alignment:
Q  757 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 856  Q
    ||||||||||| || ||||||||  ||||||||| || ||  || | ||||||||||| |||||  ||  ||||||| |||||||||||| | |||||||    
T  12037012 ttctaacatgtttggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T
Q  857 tca 859  Q
    |||    
T  12037112 tca 12037114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 782 - 824
Target Start/End: Original strand, 32777946 - 32777988
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctacttgaagtta 824  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32777946 gtagaattgattttgcctccataatttattcaacttgaagtta 32777988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 782 - 816
Target Start/End: Original strand, 33502223 - 33502257
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctact 816  Q
    ||||||||||||||||||||| |||||||||||||    
T  33502223 gtagaattgattttgcctccagaattgattctact 33502257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 751
Target Start/End: Original strand, 7629757 - 7629814
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    ||||||||||||||||| | ||||| |||| ||||||| | ||||| |||||||||||    
T  7629757 tatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgatt 7629814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 857
Target Start/End: Original strand, 21659693 - 21659770
Alignment:
Q  780 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    ||||| ||||||||||||||||| ||||| ||||||| | || ||  | ||||| ||| |||||||||| ||||||||    
T  21659693 cagtaaaattgattttgcctccataattgtttctactcgtagctaaaaattgtagcttatgattctagaattgatttt 21659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 841
Target Start/End: Original strand, 37561681 - 37561742
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 841  Q
    |||||| ||||||||||||| | |||||||||| |||||||  || ||||||||||||||||    
T  37561681 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 698 - 863
Target Start/End: Original strand, 11647981 - 11648139
Alignment:
Q  698 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 797  Q
    ||||| |||||||||||||| |||| |||||||||||| ||| || |||||||| |||       ||||| |||||| |||| ||||||||| ||| |||    
T  11647981 tttggctccacttctagagggaccataattgattttggtggtgtataattgattttga-------catgtttgattgctgtcgagtagaatttattatgc 11648073  T
Q  798 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
     |  |||||||||||||||||||| || ||||||||| |||||||| || | ||||||||||||||    
T  11648074 atttaaaattgattctacttgaagctaagatttgtacattttgattataaaattgattttcacaca 11648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 786 - 875
Target Start/End: Original strand, 14299310 - 14299399
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||  |||| |||||||| ||| ||||||||||||| ||||||||    
T  14299310 aattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaatttatagt 14299399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 789 - 857
Target Start/End: Original strand, 9818717 - 9818785
Alignment:
Q  789 tgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| ||||||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgatttt 9818785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 804 - 873
Target Start/End: Complemental strand, 6951392 - 6951323
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 873  Q
    |||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||| ||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttata 6951323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 799 - 863
Target Start/End: Original strand, 38845436 - 38845500
Alignment:
Q  799 tccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||||||| ||||||||||||||    
T  38845436 tccaaaattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacaca 38845500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 783 - 875
Target Start/End: Original strand, 42858085 - 42858177
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||||||| | ||||| |||||| | |||||||||||||| || ||||||||    
T  42858085 tagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagt 42858177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 751
Target Start/End: Complemental strand, 38845701 - 38845644
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 757 - 833
Target Start/End: Complemental strand, 27374425 - 27374349
Alignment:
Q  757 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 833  Q
    |||| |||||| || ||||| || ||||||||| |||||||||  | ||||||||||||||||||||||||||||||    
T  27374425 ttctgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatttgta 27374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 863
Target Start/End: Complemental strand, 18851272 - 18851110
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 793  Q
    |||||||| |||| |||||||||| ||||||||||||| ||||| | ||||||||| ||||       || ||| || ||| | || | ||||||||||     
T  18851272 tatgtttgattccgcttctagagggaccaaaattgattatggagttgtagaattgactctg-------acgtgtttggttgctatcaattagaattgatc 18851180  T
Q  794 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
     |  | | | |||||||||||||||||| || |||||||| ||||||||| |||| ||||||||||||||    
T  18851179 ctatccctataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacaca 18851110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 875
Target Start/End: Complemental strand, 28110557 - 28110454
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 871  Q
    |||||||||| | ||||||||| ||  |  |||||||||| || || ||||| ||||||||| ||||||||| |||| |||||||||||||| || ||||    
T  28110557 ttgttgtccatttgaattgattctgtatttaaaattgattttattttaagttgggatttgtaacttttgattttagaattgattttcacacacaaattta 28110458  T
Q  872 tagt 875  Q
    ||||    
T  28110457 tagt 28110454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 781 - 863
Target Start/End: Complemental strand, 34250461 - 34250379
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    ||||||||||||| |||||| | |||||||||||||||| | ||| | ||||| |||||||||||| | ||| ||||||||||    
T  34250461 agtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacaca 34250379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 862
Target Start/End: Original strand, 36639912 - 36639993
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    |||||||||||||||||||||||||| |||||||||||||| | | | ||||| ||| | |||||||| ||| |||| ||||    
T  36639912 agtagaattgattttgcctccaaaatagattctacttgaagctggaaattgtagcttctaattctagaattgttttttacac 36639993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 846
Target Start/End: Complemental strand, 13171866 - 13171806
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 846  Q
    |||||||| |||||||||||||||||||||||||||  | ||||||||  |||||||||||    
T  13171866 aattgattctgcctccaaaattgattctacttgaagaaaagatttgtaaattttgattcta 13171806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 848
Target Start/End: Complemental strand, 22226426 - 22226279
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 793  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| || ||||||||||||||       |||||| || |||||||| | || ||||||||    
T  22226426 tatgtttgattccacttttagacgaactataattgattttggacgtgtagaattgattctg-------acatgtttggttgttgtcgactaaaattgatt 22226334  T
Q  794 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 848  Q
    |||  |     ||||||||||||||||| ||| ||||||| ||||||||| ||||    
T  22226333 ttgttttgttgattgattctacttgaagatagtatttgtagcttttgattttaga 22226279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 834
Target Start/End: Original strand, 43268467 - 43268519
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtac 834  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||    
T  43268467 gtagaattgattttgcctccagaattggttctacttgaagttgagatttgtac 43268519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 859
Target Start/End: Original strand, 36290001 - 36290088
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttca 859  Q
    |||||||| ||||||||| || |||| | || |||||||| |||||||||||| |||||||   ||||||||| | | ||||||||||    
T  36290001 ttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattccatatttgattttca 36290088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 871
Target Start/End: Original strand, 39097244 - 39097311
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 871  Q
    |||||||||||||||||| ||  ||||||| ||||| ||| || | ||||||||||||||||| ||||    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacacataaattta 39097311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 781 - 857
Target Start/End: Original strand, 1105414 - 1105492
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga-ttctagagttgatttt 857  Q
    ||||||||||||||||| | ||||||||||| | ||| ||||||| |||||||| ||||||| ||||| | ||||||||    
T  1105414 agtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttctataattgatttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 872
Target Start/End: Complemental strand, 42439726 - 42439636
Alignment:
Q  783 tagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttat 872  Q
    ||||||||||||| |||||| |||||||||| |||||||| ||| || |||| ||||||| |||| |  ||||||| ||||  ||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttat 42439636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 751
Target Start/End: Complemental strand, 3043194 - 3043137
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    ||||| ||||||||||| | |||||| ||||||||||| | ||||| |||||||||||    
T  3043194 tatgtctggttccacttatggaggaatcaaaattgattctagaggtgtagaattgatt 3043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 819
Target Start/End: Original strand, 5468729 - 5468786
Alignment:
Q  762 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttga 819  Q
    |||||| ||||||||||| | || |||||||| |||||||| | ||||||||||||||    
T  5468729 acatgtttgattgttgtcgattataattgattctgcctccatatttgattctacttga 5468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 818
Target Start/End: Complemental strand, 22572540 - 22572511
Alignment:
Q  789 tgattttgcctccaaaattgattctacttg 818  Q
    ||||||||||||||||||||||||||||||    
T  22572540 tgattttgcctccaaaattgattctacttg 22572511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 811
Target Start/End: Original strand, 29922582 - 29922631
Alignment:
Q  762 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgatt 811  Q
    |||||| |||||||| || |||||||||||||||||||| | ||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 846
Target Start/End: Original strand, 32980519 - 32980583
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 846  Q
    ||||||| ||||||||| | || |||||||| |||||||||||| ||||| || ||||||||||||    
T  32980519 agtagaagtgattttgc-tgcagaattgattttacttgaagttaagatttatatcttttgattcta 32980583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 694 - 863
Target Start/End: Complemental strand, 28084078 - 28083916
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 793  Q
    |||||||| |||||||||||||||| |||||||||| | |||  || |||||||||||||||       ||| | || ||||| || |||||||||||||    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctga-------catatttggttgttttcgagtagaattgatt 28083986  T
Q  794 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    ||| || |  |||||||||||||||||| ||| ||||||| |||||||||||| | || ||||| |||||    
T  28083985 ttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacaca 28083916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 782 - 857
Target Start/End: Complemental strand, 31362310 - 31362239
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    ||||||||||||||||||||| ||||||||||    |||||||| ||||||| |||||||||||||| ||||||||    
T  31362310 gtagaattgattttgcctccataattgattct----gaagttagaatttgtagcttttgattctagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 781 - 846
Target Start/End: Original strand, 6021779 - 6021844
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 846  Q
    |||||||||||||||||||| | ||| |||||||||||||| |||||| |||| ||||||||||||    
T  6021779 agtagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattcta 6021844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 690 - 868
Target Start/End: Complemental strand, 36780311 - 36780139
Alignment:
Q  690 tgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaatt 789  Q
    |||||||||||| ||  |||| |||||| |||| |||||||| ||||||| ||||||||||| |||        |||| || |||||||| ||| | |||    
T  36780311 tgtatatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgattttgat-------atgtttggttgttgtcgagttgtatt 36780219  T
Q  790 gattttgcctccaaaattgattctacttgaagttagga-tttgtaccttttgattctagagttgattttcacacataatt 868  Q
     |||||  || ||||||  ||||||||||||||||||| |||||| ||||||||| |||| ||||||||| ||| |||||    
T  36780218 aattttatcttcaaaatgaattctacttgaagttaggattttgtagcttttgattatagaattgattttcgcacgtaatt 36780139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 783 - 871
Target Start/End: Original strand, 3016140 - 3016227
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 871  Q
    ||||||||||||||| |  | ||||||||||||||||| |||| ||||||| |||||||||||||| ||||| || |||||||| ||||    
T  3016140 tagaattgattttgcttt-ataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaattta 3016227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 793 - 857
Target Start/End: Complemental strand, 48549110 - 48549046
Alignment:
Q  793 tttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    ||||||||||||||||||||||||||||| ||| | ||||| ||| |||||||||| ||||||||    
T  48549110 tttgcctccaaaattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 808 - 875
Target Start/End: Original strand, 11049252 - 11049319
Alignment:
Q  808 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||| || ||||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagt 11049319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 813 - 875
Target Start/End: Original strand, 7524120 - 7524182
Alignment:
Q  813 tacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || ||||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagt 7524182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 772 - 874
Target Start/End: Complemental strand, 34387812 - 34387710
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 871  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  34387812 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 34387713  T
Q  872 tag 874  Q
    |||    
T  34387712 tag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 782 - 875
Target Start/End: Complemental strand, 38797738 - 38797645
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||| || |||||||  |||||||| |||||||||||| |||||||| ||| | | || ||| |||||||||||||| || ||||||||    
T  38797738 gtagaattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagt 38797645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 780 - 872
Target Start/End: Original strand, 1514317 - 1514409
Alignment:
Q  780 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttat 872  Q
    ||||| || ||||| || |||||||||| ||||||||||||| ||||||||||| ||||| ||| || | |||||||| ||||| || |||||    
T  1514317 cagtaaaactgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttat 1514409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 807 - 863
Target Start/End: Original strand, 30557505 - 30557561
Alignment:
Q  807 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||||| |||||| |||||||||||  ||||||||||||| ||||||||||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacaca 30557561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 695 - 874
Target Start/End: Complemental strand, 2099873 - 2099705
Alignment:
Q  695 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattt 794  Q
    ||||||||||||  ||||||||||   | |||||||| ||||||| ||||||||||| ||| ||       || |||||| |||| |||||||||||||     
T  2099873 atgtttggttcc--ttctagaggagttagaattgattctggaggtgtagaattgattatgactt-------gtttgattgatgtcgagtagaattgattg 2099783  T
Q  795 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatag 874  Q
    |  ||||| |||||||| || |||||| |  ||||||||  ||||| || |||| ||||||||||||||||| |||||||    
T  2099782 t--ctccagaattgattgtaattgaagctgagatttgtagattttggttatagaattgattttcacacataaatttatag 2099705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 764 - 875
Target Start/End: Original strand, 3416038 - 3416149
Alignment:
Q  764 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||| ||||||| ||  |||||||||||||  || || |||||||||| ||||| |||||| ||||||||  |||| ||| |||| |||||||| |||||    
T  3416038 atgtttgattgtcgttgagtagaattgattacgcatctaaaattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacaca 3416137  T
Q  864 taattttatagt 875  Q
     || ||||||||    
T  3416138 caaatttatagt 3416149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 762 - 875
Target Start/End: Complemental strand, 34721966 - 34721856
Alignment:
Q  762 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 861  Q
    |||||| ||||||||||  | || ||||||||||||||  | ||||||||||   ||||||||||||||||   |||| |||||| | ||||||||||||    
T  34721966 acatgtttgattgttgttaaatataattgattttgcctttagaattgattct---tgaagttaggatttgttgttttttattctataattgattttcaca 34721870  T
Q  862 cataattttatagt 875  Q
    || || ||||||||    
T  34721869 cacaaatttatagt 34721856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 875
Target Start/End: Complemental strand, 47322025 - 47321923
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 871  Q
    |||||||| ||||||||||||| ||| || | |||||||| ||||||||| ||| ||||| |  |||| |||||||| |||||||||| ||| || ||||    
T  47322025 ttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgca-gttttaattctagaattgattttcatacacaaattta 47321927  T
Q  872 tagt 875  Q
    ||||    
T  47321926 tagt 47321923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 786 - 848
Target Start/End: Original strand, 50571264 - 50571326
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 848  Q
    ||||||||||  || || ||||||||||||||||||||||||||||||  |||| ||||||||    
T  50571264 aattgattttatcttcagaattgattctacttgaagttaggatttgtagttttttattctaga 50571326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 781 - 863
Target Start/End: Complemental strand, 51500939 - 51500862
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    ||||||||||||||| |||||||      |||||||||||  ||||||||||| |||||||||||||| |||||||| |||||    
T  51500939 agtagaattgattttacctccaag-----ttctacttgaacctaggatttgtagcttttgattctagaattgatttttacaca 51500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 804 - 872
Target Start/End: Complemental strand, 7790729 - 7790661
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttat 872  Q
    ||||||||||||||||||||| ||||||||  ||| ||||||| | |||||||| ||||| || |||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttat 7790661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 862
Target Start/End: Complemental strand, 10325043 - 10324967
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    |||| |||||||||| | |||||| ||||||||||| ||| | ||||| |||||||||||| | |||||||| ||||    
T  10325043 aattaattttgcctctagaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacac 10324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 863
Target Start/End: Original strand, 3909827 - 3909918
Alignment:
Q  772 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||||| |||| || | ||||||| | |||||| |||||  |||||||||||||| ||||  |||| ||| |||| ||||||||||||||    
T  3909827 ttgttgtcaagtataactcattttgctttcaaaatcgattcagcttgaagttaggatatgtagattttcattatagaattgattttcacaca 3909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 751
Target Start/End: Complemental strand, 15478196 - 15478134
Alignment:
Q  689 ttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    |||| ||||||||||||||||| | ||||| ||||| |||||||| | ||| |||||||||||    
T  15478196 ttgtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgatt 15478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 804 - 862
Target Start/End: Complemental strand, 28287423 - 28287365
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    ||||| ||||||||||||  |||||||||| ||||||||| |||| |||||||| ||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacac 28287365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 791 - 873
Target Start/End: Original strand, 33733954 - 33734036
Alignment:
Q  791 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 873  Q
    |||||| || ||||||||||| || || ||||||| |||| || |||||||||| ||  |||||||| |||||||| ||||||    
T  33733954 attttgtcttcaaaattgattgtatttaaagttagaatttttaacttttgattcgagcattgatttttacacataaatttata 33734036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 781 - 875
Target Start/End: Complemental strand, 50569753 - 50569659
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    ||||||||||||||| |||| |||||| || || ||||||  |||||| |||| ||||||| |||| | |||| ||||||| | || ||||||||    
T  50569753 agtagaattgattttacctcaaaaattaatgctgcttgaaactaggatctgtaacttttgaatctataattgaatttcacaaacaaatttatagt 50569659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 782 - 834
Target Start/End: Original strand, 5268194 - 5268247
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtac 834  Q
    |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  5268194 gtagaattaattttgcctccaaaattgattctaactcgaagctagaatttgtac 5268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 751
Target Start/End: Original strand, 8130853 - 8130910
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    ||||||||||||||||||| ||||| |||||||||||| |  | || |||||||||||    
T  8130853 tatgtttggttccacttctggaggagccaaaattgattctaaaagtgtagaattgatt 8130910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 875
Target Start/End: Complemental strand, 15986326 - 15986237
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 875  Q
    |||| |||||||||||| |||||||| || |||||  ||||||||  |  |||| |||||||| ||||| |||||||| || ||||||||    
T  15986326 aattaattttgcctccagaattgattatagttgaaactaggatttcaagttttttattctagaattgatattcacacacaaatttatagt 15986237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 45660938 - 45660878
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 755  Q
    ||||||| ||||||||||| ||||  |||||||||| |||||||||  ||||||||||||||    
T  45660938 tatgtttcgttccacttctggaggggccaaaattga-tttggaggtgaagaattgattctga 45660878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 694 - 863
Target Start/End: Complemental strand, 25359763 - 25359602
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 793  Q
    ||||||||||||||||| |||||   ||| |||||||| ||||||| |||||||| ||||       | ||||| || ||| |||| | || ||||||||    
T  25359763 tatgtttggttccacttttagagtggccagaattgattatggaggtatagaattgcttct-------accatgtttggttgctgtcaaata-aattgatt 25359672  T
Q  794 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
     |||||||| |||||||||||||||||||||| |||||||  |||| |||||| | ||||||||||||||    
T  25359671 ctgcctccagaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacaca 25359602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 762 - 860
Target Start/End: Original strand, 54596774 - 54596872
Alignment:
Q  762 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcac 860  Q
    |||||| || ||||| || ||||||||||||| ||||||||||| ||||| || |||||||||| ||||||| ||||| ||| |||| |||||||||||    
T  54596774 acatgtttggttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattttagaattgattttcac 54596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 769 - 873
Target Start/End: Complemental strand, 40736659 - 40736556
Alignment:
Q  769 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 868  Q
    ||||||||||| |||| |||||||||||| ||| ||||||||||||||||||  ||  ||||||  |||||||||||||| || ||||||||||| || |    
T  40736659 tgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttgtcgcttttgattctaga-ttaattttcacacacaaat 40736561  T
Q  869 ttata 873  Q
    |||||    
T  40736560 ttata 40736556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 692 - 755
Target Start/End: Complemental strand, 52141437 - 52141374
Alignment:
Q  692 tatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 755  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| ||||||||    
T  52141437 tatatgtttggttccacttctagagggaccataattgatttttgaggtgtagaatagattctga 52141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 751
Target Start/End: Original strand, 1290676 - 1290733
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||    
T  1290676 tatgtttggttccacttctagaggaactaaaattgattctagaggtgtagaattgatt 1290733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 781 - 845
Target Start/End: Complemental strand, 7717431 - 7717367
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 845  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| | ||||| ||| |||||||    
T  7717431 agtagaattgattttgcctccagaattgattctacttgaagctagaaattgtagcttctgattct 7717367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 781 - 863
Target Start/End: Complemental strand, 32523451 - 32523368
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttg-aagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||| ||| ||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||| | |||||||| |||||    
T  32523451 agtaaaatagattttgcctccataattatttctacttggaagttaggatttgtagcttttgattctaaaattgatttttacaca 32523368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 862
Target Start/End: Original strand, 35058336 - 35058417
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| | ||  | |||||||||||||| |||||||| ||||    
T  35058336 agtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgattttaacac 35058417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 862
Target Start/End: Complemental strand, 37335139 - 37335063
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    ||||||||||||||| | |||||||| |||| |||||||| | | ||| |||||||||||||| |||||||| ||||    
T  37335139 aattgattttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgatttttacac 37335063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 781 - 848
Target Start/End: Complemental strand, 1441491 - 1441424
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 848  Q
    |||||||||||||||| ||| | ||| || ||||||||||  ||||||||||| ||||||||||||||    
T  1441491 agtagaattgattttgtctctataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 782 - 864
Target Start/End: Original strand, 44771670 - 44771752
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 864  Q
    ||||||||| ||||||||||  |||||||||||| | ||  ||| ||||||| |||||||||||| | |||||||| ||||||    
T  44771670 gtagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttttacacat 44771752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 751
Target Start/End: Complemental strand, 3845302 - 3845245
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    ||||||||||||||||| | ||| |||||||||||||| | ||||| |||||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgatt 3845245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 751
Target Start/End: Original strand, 52363960 - 52364017
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    ||||||||||||||||| |||||| ||||||||||||| | ||||| || ||||||||    
T  52363960 tatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatt 52364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 872
Target Start/End: Complemental strand, 35264518 - 35264430
Alignment:
Q  784 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttat 872  Q
    |||||||||| ||||||||||  ||||||||||||||  ||| | ||  | |||||||||||||| |||||||| |||| ||| |||||    
T  35264518 agaattgattctgcctccaaatatgattctacttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttat 35264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 812
Target Start/End: Complemental strand, 48410939 - 48410891
Alignment:
Q  764 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattc 812  Q
    |||| |||||| | || ||||||||||||||||||||||||||||||||    
T  48410939 atgtttgattgctttcgagtagaattgattttgcctccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 821
Target Start/End: Complemental strand, 30301108 - 30301069
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctacttgaag 821  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  30301108 gtagaattgattttgcctccaaaattgactctatttgaag 30301069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 859
Target Start/End: Original strand, 35058065 - 35058120
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttca 859  Q
    |||||||||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||    
T  35058065 aattgattctacatgaagctaggatttgtagcttttaattatagaattgattttca 35058120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 781 - 840
Target Start/End: Complemental strand, 41115472 - 41115413
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttg 840  Q
    ||||||||||||||||| |  | |||||||||||||||||| ||| ||||||| ||||||    
T  41115472 agtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttg 41115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 871
Target Start/End: Original strand, 52364049 - 52364116
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 871  Q
    ||||| |||||||||||| || ||||| || |||||||||||| | |||||||||| |||||| ||||    
T  52364049 aattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacataaattta 52364116  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 821
Target Start/End: Original strand, 38022410 - 38022451
Alignment:
Q  781 agtagaattgatttt-gcctccaaaattgattctacttgaag 821  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  38022410 agtagaattgatttttgcctccaaaattgattctacctgaag 38022451  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 856
Target Start/End: Complemental strand, 40147950 - 40147885
Alignment:
Q  791 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 856  Q
    |||||| || || |||||||||||||| ||| ||| ||||| | |||||||||||||| |||||||    
T  40147950 attttgtcttcagaattgattctacttcaagctagaatttggagcttttgattctagaattgattt 40147885  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 862
Target Start/End: Complemental strand, 44958712 - 44958635
Alignment:
Q  785 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    |||||||||||||||||| | ||||||||||| || | ||| | ||| | ||||||||||||||  ||||||| ||||    
T  44958712 gaattgattttgcctccagagttgattctactcgatgctagaaattggagcttttgattctagaaatgattttaacac 44958635  T

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Target: chr7 (Bit Score: 46; Significance: 9e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 786 - 863
Target Start/End: Complemental strand, 15903635 - 15903558
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||  ||  | ||||||||||||||    
T  15903635 aattgattttgcctccaaaattgattatacttgaagttgggatttgtagcttttgaagcttcaattgattttcacaca 15903558  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 762 - 862
Target Start/End: Original strand, 27571818 - 27571918
Alignment:
Q  762 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 861  Q
    |||||| |||||| | || |||| |||||||||| |||| | |||||||||||||||||||||| | ||| | |||||||||||||| |||||||| |||    
T  27571818 acatgtttgattgctctcgagtataattgattttacctcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaaca 27571917  T
Q  862 c 862  Q
    |    
T  27571918 c 27571918  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 757 - 873
Target Start/End: Complemental strand, 41386949 - 41386833
Alignment:
Q  757 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 856  Q
    |||| |||||| |||||| | || |||| |||||||||  ||| || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |    
T  41386949 ttctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaattgatat 41386850  T
Q  857 tcacacataattttata 873  Q
    | ||||| || ||||||    
T  41386849 ttacacacaaatttata 41386833  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 762 - 861
Target Start/End: Original strand, 22195820 - 22195919
Alignment:
Q  762 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 861  Q
    |||||| ||||| ||||| ||||||||||||| || |  ||||||||||| ||||| ||| || |||||||| |||||||||||| | ||||||||||||    
T  22195820 acatgtttgattattgtcgagtagaattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcaca 22195919  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 786 - 863
Target Start/End: Original strand, 40491558 - 40491635
Alignment:
Q  786 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 863  Q
    |||||||||||||| || |||||| |||||||||||||| | |||||| |||||||||||||| |||| ||| |||||    
T  40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacaca 40491635  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 769 - 873
Target Start/End: Original strand, 35772221 - 35772325
Alignment:
Q  769 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 868  Q
    ||||||||||  | |||||||| || || |||||||||| ||||||||| || ||| ||||||||  |||||||| |||| |||||||||||| |||| |    
T  35772221 tgattgttgtagaatagaattggttctgtctccaaaatttattctacttaaaattaagatttgtagtttttgattttagaattgattttcacaaataaat 35772320  T
Q  869 ttata 873  Q
    |||||    
T  35772321 ttata 35772325  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 783 - 862
Target Start/End: Complemental strand, 28725160 - 28725081
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    |||||||||||  |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||| | |||||| ||||||    
T  28725160 tagaattgattcagcctccaatattgattatacttgaagctagaatttgtagcttttgattctataattgattctcacac 28725081  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 862
Target Start/End: Complemental strand, 5489956 - 5489875
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||| | ||| | ||||||||| || | |||||||| ||||    
T  5489956 agtagaattaattttgcctccaaaattgattctacttgatgctagaaattggagcttttgattatataattgattttaacac 5489875  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 838
Target Start/End: Original strand, 36270955 - 36271012
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttt 838  Q
    |||||||||||||||||||| | |||| ||||||||||||||| ||||||||| ||||    
T  36270955 agtagaattgattttgcctctagaatttattctacttgaagttgggatttgtagcttt 36271012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 841
Target Start/End: Original strand, 40422767 - 40422828
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 841  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||  |||||||    
T  40422767 agtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 857
Target Start/End: Complemental strand, 44856917 - 44856843
Alignment:
Q  781 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 857  Q
    ||||||||||||||| |||||||||||||| |||||||||  || ||||| || | |||||||||||| ||||||||    
T  44856917 agtagaattgattttccctccaaaattgatactacttgaa--tatgatttataacatttgattctagaattgatttt 44856843  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 862
Target Start/End: Complemental strand, 30182404 - 30182325
Alignment:
Q  782 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 862  Q
    |||||||||||||  ||||||||||||||||||||||||| ||  | ||||| |||||||||||||| || ||||| ||||    
T  30182404 gtagaattgatttc-cctccaaaattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacac 30182325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 751
Target Start/End: Original strand, 46325570 - 46325627
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    ||||||||||| ||||||||||| ||||||| || |||||||| || |||||||||||    
T  46325570 tatgtttggtttcacttctagagaaaccaaatttaattttggatgtgtagaattgatt 46325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 821
Target Start/End: Original strand, 45004997 - 45005035
Alignment:
Q  783 tagaattgattttgcctccaaaattgattctacttgaag 821  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  45004997 tagaattgattttgccttcagaattgattctacttgaag 45005035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 804 - 845
Target Start/End: Original strand, 17111855 - 17111896
Alignment:
Q  804 aattgattctacttgaagttaggatttgtaccttttgattct 845  Q
    |||||||||||||||||| || |||||||| |||||||||||    
T  17111855 aattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 695 - 751
Target Start/End: Original strand, 17322 - 17378
Alignment:
Q  695 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 751  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgatt 17378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 31605 - 31544
Alignment:
Q  694 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 755  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||  | || ||||||||||||    
T  31605 tatgtttagttccacttctagagggaccaaaattgattttagacctgtaaaattgattctga 31544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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