View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752-Insertion-6 (Length: 720)

Name: NF0752-Insertion-6
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752-Insertion-6
NF0752-Insertion-6
[»] chr1 (29 HSPs)
chr1 (8-720)||(868274-868986)
chr1 (250-391)||(21472855-21472999)
chr1 (250-389)||(24177622-24177764)
chr1 (250-387)||(22346751-22346891)
chr1 (250-390)||(7213096-7213246)
chr1 (250-391)||(28041238-28041382)
chr1 (250-391)||(31737434-31737577)
chr1 (250-380)||(20259908-20260041)
chr1 (285-391)||(28493477-28493586)
chr1 (294-391)||(1114023-1114123)
chr1 (269-382)||(30688418-30688534)
chr1 (299-391)||(19035331-19035426)
chr1 (252-368)||(34644441-34644560)
chr1 (284-382)||(5453956-5454057)
chr1 (254-391)||(45835301-45835440)
chr1 (274-382)||(4611050-4611161)
chr1 (250-339)||(45659757-45659846)
chr1 (250-382)||(2898563-2898698)
chr1 (252-346)||(2764379-2764473)
chr1 (261-339)||(47459589-47459667)
chr1 (277-391)||(29170322-29170439)
chr1 (267-334)||(21934289-21934357)
chr1 (250-320)||(4862100-4862170)
chr1 (253-331)||(11128368-11128446)
chr1 (294-391)||(17077971-17078071)
chr1 (250-286)||(29169904-29169940)
chr1 (250-310)||(38731545-38731605)
chr1 (312-391)||(44270009-44270091)
chr1 (279-332)||(51067195-51067247)
[»] chr3 (35 HSPs)
chr3 (250-391)||(32546647-32546791)
chr3 (250-391)||(53785561-53785705)
chr3 (250-389)||(44687-44832)
chr3 (250-391)||(4763904-4764047)
chr3 (250-391)||(52741623-52741767)
chr3 (261-382)||(26772619-26772743)
chr3 (250-382)||(39583340-39583475)
chr3 (250-382)||(13582371-13582506)
chr3 (250-391)||(44198619-44198763)
chr3 (261-382)||(38671002-38671126)
chr3 (250-366)||(26856873-26856992)
chr3 (254-380)||(37133114-37133243)
chr3 (264-383)||(4669788-4669910)
chr3 (250-339)||(5338553-5338639)
chr3 (259-338)||(4472970-4473049)
chr3 (250-333)||(38145969-38146052)
chr3 (250-382)||(21552525-21552664)
chr3 (250-382)||(49017828-49017959)
chr3 (284-391)||(26276462-26276577)
chr3 (250-334)||(25094683-25094767)
chr3 (250-334)||(38978910-38978994)
chr3 (250-334)||(52412002-52412086)
chr3 (250-333)||(3443423-3443506)
chr3 (264-334)||(7257681-7257751)
chr3 (258-383)||(8592001-8592128)
chr3 (250-332)||(25324943-25325025)
chr3 (257-342)||(37992237-37992322)
chr3 (258-341)||(35484799-35484882)
chr3 (265-335)||(26393812-26393882)
chr3 (250-368)||(3643028-3643147)
chr3 (347-391)||(39661396-39661440)
chr3 (269-382)||(46940903-46941019)
chr3 (259-329)||(54508504-54508574)
chr3 (250-335)||(4537593-4537677)
chr3 (276-333)||(32691003-32691060)
[»] chr8 (31 HSPs)
chr8 (250-391)||(22589447-22589591)
chr8 (250-377)||(38815160-38815290)
chr8 (250-391)||(18804465-18804608)
chr8 (250-391)||(24124880-24125024)
chr8 (251-338)||(3187878-3187965)
chr8 (250-363)||(37514101-37514217)
chr8 (299-391)||(18596759-18596854)
chr8 (261-391)||(24450974-24451105)
chr8 (252-346)||(39434567-39434661)
chr8 (254-346)||(4699771-4699863)
chr8 (250-339)||(6592483-6592571)
chr8 (250-338)||(6618193-6618280)
chr8 (262-333)||(4066758-4066829)
chr8 (250-368)||(43823864-43823985)
chr8 (270-332)||(8882258-8882320)
chr8 (287-391)||(500094-500201)
chr8 (261-338)||(42659135-42659212)
chr8 (250-315)||(3821155-3821220)
chr8 (259-332)||(9259412-9259485)
chr8 (258-332)||(4073448-4073522)
chr8 (250-332)||(25021925-25022007)
chr8 (297-377)||(24350880-24350963)
chr8 (253-321)||(121835-121903)
chr8 (355-391)||(1187411-1187447)
chr8 (250-333)||(28196105-28196188)
chr8 (290-339)||(24320244-24320293)
chr8 (250-334)||(5329713-5329797)
chr8 (288-332)||(8227984-8228028)
chr8 (313-382)||(44337201-44337272)
chr8 (353-391)||(26732980-26733018)
chr8 (270-339)||(6792176-6792245)
[»] chr2 (31 HSPs)
chr2 (250-391)||(4413177-4413321)
chr2 (250-391)||(41868019-41868162)
chr2 (250-391)||(9685526-9685670)
chr2 (250-391)||(17344490-17344634)
chr2 (250-391)||(13413203-13413347)
chr2 (250-391)||(18745065-18745209)
chr2 (278-391)||(15515286-15515402)
chr2 (301-390)||(3208406-3208498)
chr2 (250-382)||(19161894-19162029)
chr2 (252-340)||(27502268-27502356)
chr2 (265-370)||(27494184-27494292)
chr2 (300-391)||(42122669-42122763)
chr2 (276-370)||(28224873-28224970)
chr2 (309-382)||(41702133-41702209)
chr2 (313-391)||(20143119-20143200)
chr2 (250-332)||(23485047-23485129)
chr2 (252-314)||(44686348-44686410)
chr2 (256-321)||(20142871-20142935)
chr2 (306-382)||(30602350-30602429)
chr2 (250-391)||(2886726-2886871)
chr2 (259-333)||(3825639-3825713)
chr2 (250-332)||(16351955-16352037)
chr2 (250-338)||(1296188-1296276)
chr2 (283-339)||(11921348-11921404)
chr2 (302-391)||(2248494-2248586)
chr2 (347-391)||(13845391-13845435)
chr2 (264-304)||(33612670-33612710)
chr2 (352-391)||(1472347-1472386)
chr2 (250-289)||(20142836-20142875)
chr2 (252-299)||(24765208-24765255)
chr2 (251-333)||(10296638-10296720)
[»] scaffold0009 (1 HSPs)
scaffold0009 (251-391)||(102958-103101)
[»] chr7 (41 HSPs)
chr7 (250-391)||(21326949-21327093)
chr7 (250-391)||(19277143-19277289)
chr7 (250-391)||(25187042-25187186)
chr7 (250-391)||(45613953-45614097)
chr7 (250-391)||(982801-982945)
chr7 (252-333)||(48539094-48539175)
chr7 (250-391)||(24527436-24527585)
chr7 (250-391)||(4501111-4501255)
chr7 (267-391)||(27027758-27027885)
chr7 (271-391)||(45974731-45974854)
chr7 (250-391)||(27521323-27521467)
chr7 (261-382)||(45003019-45003143)
chr7 (253-346)||(41117884-41117977)
chr7 (252-339)||(28517400-28517487)
chr7 (250-391)||(22197839-22197982)
chr7 (250-391)||(22239839-22239982)
chr7 (261-377)||(5825139-5825258)
chr7 (250-333)||(30216169-30216252)
chr7 (250-390)||(5972327-5972470)
chr7 (260-383)||(10904978-10905104)
chr7 (250-391)||(43333941-43334086)
chr7 (250-391)||(34772635-34772778)
chr7 (252-377)||(40726593-40726721)
chr7 (250-334)||(23037457-23037541)
chr7 (250-332)||(43856788-43856870)
chr7 (250-391)||(42295295-42295432)
chr7 (259-338)||(38839234-38839313)
chr7 (254-332)||(5714954-5715032)
chr7 (252-367)||(32584476-32584594)
chr7 (273-344)||(2904283-2904353)
chr7 (312-382)||(38766185-38766258)
chr7 (352-391)||(48539283-48539322)
chr7 (269-334)||(9281266-9281331)
chr7 (269-334)||(9292237-9292302)
chr7 (257-333)||(36558985-36559061)
chr7 (279-334)||(29054761-29054816)
chr7 (294-376)||(32336279-32336359)
chr7 (356-391)||(32682023-32682058)
chr7 (261-296)||(38766259-38766294)
chr7 (261-304)||(44525927-44525970)
chr7 (262-304)||(6635086-6635128)
[»] chr4 (39 HSPs)
chr4 (250-391)||(30940843-30940987)
chr4 (252-382)||(3329857-3329990)
chr4 (250-391)||(53170365-53170509)
chr4 (250-391)||(600803-600947)
chr4 (250-391)||(16955312-16955456)
chr4 (261-377)||(39001263-39001382)
chr4 (250-382)||(34107807-34107942)
chr4 (252-382)||(50001039-50001172)
chr4 (250-370)||(4419137-4419259)
chr4 (261-382)||(53619447-53619571)
chr4 (278-382)||(31846964-31847071)
chr4 (308-391)||(40392723-40392809)
chr4 (250-382)||(26521350-26521484)
chr4 (253-335)||(25504206-25504288)
chr4 (269-369)||(50442609-50442712)
chr4 (252-370)||(23255586-23255707)
chr4 (251-337)||(18981651-18981735)
chr4 (261-370)||(48657037-48657147)
chr4 (258-343)||(38535688-38535772)
chr4 (257-368)||(50464414-50464528)
chr4 (276-370)||(55933597-55933694)
chr4 (277-382)||(23604951-23605059)
chr4 (250-324)||(56462217-56462291)
chr4 (250-333)||(45661604-45661687)
chr4 (257-338)||(23242808-23242889)
chr4 (250-370)||(42455718-42455841)
chr4 (250-346)||(8738105-8738201)
chr4 (284-391)||(47585153-47585263)
chr4 (250-332)||(34213534-34213615)
chr4 (262-339)||(7536694-7536771)
chr4 (257-334)||(23233232-23233309)
chr4 (250-325)||(32312822-32312902)
chr4 (270-326)||(40005289-40005345)
chr4 (250-338)||(54190962-54191050)
chr4 (287-334)||(2852347-2852394)
chr4 (261-304)||(28739847-28739890)
chr4 (250-304)||(6865931-6865984)
chr4 (271-333)||(9601122-9601184)
chr4 (248-334)||(49354175-49354265)
[»] chr5 (26 HSPs)
chr5 (250-391)||(2566206-2566350)
chr5 (250-391)||(32269908-32270051)
chr5 (250-391)||(15292136-15292280)
chr5 (250-391)||(42921550-42921693)
chr5 (247-347)||(23023494-23023594)
chr5 (255-389)||(14423545-14423676)
chr5 (250-391)||(26212694-26212838)
chr5 (250-391)||(22188766-22188909)
chr5 (262-382)||(35310309-35310432)
chr5 (252-338)||(430510-430596)
chr5 (252-382)||(13167023-13167156)
chr5 (257-323)||(15809972-15810038)
chr5 (252-338)||(25663145-25663231)
chr5 (265-339)||(27336602-27336676)
chr5 (250-346)||(15832962-15833058)
chr5 (261-382)||(33692176-33692298)
chr5 (249-370)||(24113448-24113572)
chr5 (250-335)||(38875552-38875634)
chr5 (253-334)||(15506729-15506810)
chr5 (250-339)||(37873749-37873838)
chr5 (306-376)||(2917527-2917601)
chr5 (299-364)||(11005757-11005825)
chr5 (282-334)||(34475953-34476005)
chr5 (259-346)||(8100454-8100539)
chr5 (250-288)||(16017131-16017169)
chr5 (294-331)||(12033346-12033383)
[»] scaffold1768 (1 HSPs)
scaffold1768 (250-382)||(295-430)
[»] chr6 (19 HSPs)
chr6 (257-334)||(3137365-3137442)
chr6 (265-370)||(17249431-17249539)
chr6 (250-339)||(32115625-32115714)
chr6 (269-391)||(34168773-34168897)
chr6 (250-334)||(959493-959577)
chr6 (252-382)||(33220824-33220957)
chr6 (286-382)||(7749342-7749441)
chr6 (250-388)||(28625786-28625926)
chr6 (250-331)||(4206707-4206788)
chr6 (261-371)||(34304368-34304481)
chr6 (253-331)||(4166036-4166114)
chr6 (253-343)||(34554391-34554480)
chr6 (250-331)||(29338190-29338271)
chr6 (263-332)||(357840-357909)
chr6 (252-383)||(28543257-28543391)
chr6 (347-391)||(45832-45876)
chr6 (250-334)||(28009098-28009182)
chr6 (331-391)||(34562369-34562432)
chr6 (276-333)||(26225716-26225773)
[»] scaffold0148 (1 HSPs)
scaffold0148 (250-391)||(33102-33246)
[»] scaffold0309 (1 HSPs)
scaffold0309 (294-391)||(5176-5276)
[»] scaffold0406 (1 HSPs)
scaffold0406 (297-381)||(6750-6837)
[»] scaffold0470 (1 HSPs)
scaffold0470 (250-338)||(7511-7598)
[»] scaffold0490 (1 HSPs)
scaffold0490 (250-301)||(6279-6330)
[»] scaffold0244 (1 HSPs)
scaffold0244 (292-382)||(16807-16900)
[»] scaffold0031 (1 HSPs)
scaffold0031 (250-366)||(49292-49411)
[»] scaffold0361 (1 HSPs)
scaffold0361 (249-330)||(17389-17468)
[»] scaffold0514 (1 HSPs)
scaffold0514 (270-339)||(4378-4447)


Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 720
Target Start/End: Original strand, 868274 - 868986
Alignment:
Q  8 acgtcaaacactgatacgacaccaacataggtatttacattcaatcattctannnnnnncaacccaatatttgtctatgtatcagtgtcgtgtcaaatgt 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  868274 acgtcaaacactgatacgacaccgacataggtatttacattcaatcattctatttttttcaacccaatatttgtctatgtatcagtgtcgtgtcaaatgt 868373  T
Q  108 ttgtacttcataccccatgagtcatgaggacctagtgtcgtatccaatgtccatgtgtacgatacatagctcacaacgtaaaagtgattaacgtctaacc 207  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  868374 ttgtacttcatacctcatgagtcatgaggacctagtgtcgtatccaatgtccatgtgtacgatacatagctcacaacgtaaaagtgattaacgtctaacc 868473  T
Q  208 ttgtcaactaaatcaacattcctagcttnnnnnnnnnngaaattcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcac 307  Q
    ||||||||||||||||||||||||||||          |   |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  868474 ttgtcaactaaatcaacattcctagcttaaaataaaaagg--ttcaaaaggtcatgcatagcaatgtcatgtctcctaagtccatgaat--tgtgttcac 868569  T
Q  308 gaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatatnnnnnnnnnnnnn 404  Q
     ||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||                 
T  868570 aaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataattgtttatataaaataaataaaa 868669  T
Q  405 nnnnnnnn-cttttgctaatgtgaaacatgaatgaattgaaggagagagtgattaccaaattaggtttttgagaagaaggggatagagaggtaatgagaa 503  Q
             |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  868670 aataaaaaacttttgctgatgtgaaacatgaatgaattgaaggagagagtgattaccaaattgggtttttgagaagaaggggatagagaggtaatgagaa 868769  T
Q  504 agtcgaaagagagtagtgaggtggggagggagggaaattcgtgatctagcgtggatttgatgtgtgaattgggaagatgaagcaatttgtggagaagatg 603  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  868770 agtcgaaagagagtagtgaggtgggaagggagggaaattcgtgatctagcgtgggtttgatgtgtgaattgggaagatgaagcaatttgtggagaagagg 868869  T
Q  604 atttgaatttgatttagaattggaggagtggttgcggaagaagaaattgtgtgggattcttccactgtaactctttcttgctatgcttaaaaccctaatt 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  868870 atttgaatttgatttagaattggaggagtggttgcggaagaagaaattgtgtgggattcttccactgtaactctttcttgctatgcttaaaaccctaatt 868969  T
Q  704 cctgatgccatttcttc 720  Q
    |||||||||||||||||    
T  868970 cctgatgccatttcttc 868986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 21472999 - 21472855
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||       
T  21472999 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgcgttcaggaggactggttttgccatccaaaaaggtctagcggcgcaact 21472900  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    | |||||||||||| ||||||||||||||||||||| ||||||||    
T  21472899 tattgcccgcttgcattctattcaagtgtaaataatggtttatat 21472855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 24177622 - 24177764
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||       
T  24177622 ttcaaaaagtcatgcatagcaatgtcatatctcctaggtccatgaatgttgtgttcacgaggattggttttgccaaccaaaaaggtctagcggtgcagct 24177721  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttat 389  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  24177722 tgttgcccgcttgtcttctattcaagtgtaaataatggtttat 24177764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 250 - 387
Target Start/End: Complemental strand, 22346891 - 22346751
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||       
T  22346891 ttcaaaaggtcatgcatagaaatgtcatgtctcctaggtttatgaatgttgtgttcacgaggattagttttgccatccaaaaaggtctagcggcgcagct 22346792  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgttt 387  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  22346791 tgttgtccgcttgccttctattcaagtgtaaataatggttt 22346751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 7213246 - 7213096
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgag-------gattggttttgccatccaaaaaggtctagtgg 342  Q
    ||||||| ||||||||||  |||||||||||| |||||||||||||||||||||||||||        |||||||||| |||||||||||||||||| ||    
T  7213246 ttcaaaatgtcatgcataataatgtcatgtcttctaggtccatgaatgttgtgttcacgaatcacgatgattggttttaccatccaaaaaggtctagcgg 7213147  T
Q  343 cgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttata 390  Q
    ||||   |||||||||||||||||||||||||||||||||||| |||||||    
T  7213146 cgcaacttgttgcccgcttgccttctattcaagtgtaaataatggtttata 7213096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 28041238 - 28041382
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||| ||| |||||||| |||| |||||||||||||||||| |||   ||     
T  28041238 ttcaaaaggtcatgcatagcaatgtcatgtcctctaagtccatgaatgttgtgctcatgaggattgatttttccatccaaaaaggtctagcggcggagct 28041337  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| ||||||| |||||||| ||||||||||||| ||||||||    
T  28041338 tgttgtccgcttgtcttctatttaagtgtaaataatggtttatat 28041382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 31737434 - 31737577
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| |||||| |||| |||||| ||||||||| | ||||| |||||||||| ||||||||||||||||||  | | ||||||       
T  31737434 ttcaaaaggtcatgcatatcaatgttatgtttcctagatccatgaat-tagtgtttacgaggattgattttgccatccaaaaaggcttggcggcgcagct 31737532  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| | | |||||||||||||||||||||||||||||||||||    
T  31737533 tgttgtctgtttgccttctattcaagtgtaaataattgtttatat 31737577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 250 - 380
Target Start/End: Original strand, 20259908 - 20260041
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||| ||||||||||||| || ||  || ||||||||||| |   |||||||||||||||||||||||||||||| ||||||       
T  20259908 ttcaaaaggtcatgcatagtaatgtcatgtctcataagttaataaatgttgtgtttatatggattggttttgccatccaaaaaggtctagcggcgcagtt 20260007  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaata 380  Q
    ||||||||  ||| ||||||||||||||||||||    
T  20260008 tgttgccccattgtcttctattcaagtgtaaata 20260041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 285 - 391
Target Start/End: Original strand, 28493477 - 28493586
Alignment:
Q  285 aggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataa 381  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||   ||||| ||| ||| |||||||||||||||||||||    
T  28493477 aggtccatgaatgttatgttcacgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaaataa 28493576  T
Q  382 ttgtttatat 391  Q
    |  |||||||    
T  28493577 tgatttatat 28493586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 294 - 391
Target Start/End: Original strand, 1114023 - 1114123
Alignment:
Q  294 aatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gcatgttgcccgcttgccttctattcaagtgtaaataattgtttata 390  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||   || ||||||||||||| |||||||||||||||||||||| |||||||    
T  1114023 aatgttgtgtttacgaggattggttttgccatccaaaaaggtctaacggcacagcttgttgcccgcttggcttctattcaagtgtaaataatggtttata 1114122  T
Q  391 t 391  Q
    |    
T  1114123 t 1114123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 269 - 382
Target Start/End: Complemental strand, 30688534 - 30688418
Alignment:
Q  269 caatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttct 365  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||  ||||||||||| |||| ||||||   ||||||||||||||| |||    
T  30688534 caatgtcatgactcctgggtccatgaatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatct 30688435  T
Q  366 attcaagtgtaaataat 382  Q
    ||||| |||||| ||||    
T  30688434 attcatgtgtaattaat 30688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 299 - 391
Target Start/End: Complemental strand, 19035426 - 19035331
Alignment:
Q  299 tgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||   ||||| ||| |||||||||||||||||||||||||| ||||||||    
T  19035426 tgtgttcacgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaaataatggtttatat 19035331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 34644560 - 34644441
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||||| ||||||   ||    
T  34644560 caaagggttatgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgccatccaaaaaagtctagcggcgcagtttg 34644461  T
Q  349 ttgcccgcttgccttctatt 368  Q
    |||||||||| ||| |||||    
T  34644460 ttgcccgcttacctcctatt 34644441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 5454057 - 5453956
Alignment:
Q  284 taggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaata 380  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||||   |||||||||||||||| ||||||| |||||| ||    
T  5454057 taggtccatgaatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagta 5453958  T
Q  381 at 382  Q
    ||    
T  5453957 at 5453956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 254 - 391
Target Start/End: Original strand, 45835301 - 45835440
Alignment:
Q  254 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgtt 350  Q
    |||||||||| ||  || |||||| ||| ||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||  |||||   | ||    
T  45835301 aaaggtcatgtattacattgtcatctcttctaggtctatgaatgttgtgtttacgaggattgattttgccatccaaaaag-tctagctgcgcagtttatt 45835399  T
Q  351 gcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| || | ||||||||||||||||||||| ||||||||    
T  45835400 gcccgtttcctttctattcaagtgtaaataatggtttatat 45835440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 274 - 382
Target Start/End: Complemental strand, 4611161 - 4611050
Alignment:
Q  274 tcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gcatgttgcccgcttgccttctattca 370  Q
    ||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||   ||   || ||||| ||||||||||| ||||||    
T  4611161 tcatgtctcctaggtccatgaatattgtgttcacgatgattgattttgtcatccaaaaaggtctaacagcacagcttgttgtccgcttgccttttattca 4611062  T
Q  371 agtgtaaataat 382  Q
    ||| ||||||||    
T  4611061 agtataaataat 4611050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 45659757 - 45659846
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||| ||||| |||||||  ||||||| || ||||||||||||||    
T  45659757 ttcaaaagatcatgcatagcaatgtcatgtctcctaggtcaataaatgtcgtgtttacgaggaccggttttgtcacccaaaaaggtctag 45659846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 250 - 382
Target Start/End: Complemental strand, 2898698 - 2898563
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||||||| ||||||||| |||| ||||||||| || |  ||||||||||||||| | |||||||| ||||||||||||||||||  ||| |||   ||     
T  2898698 ttcaaaagatcatgcataacaatatcatgtctcatacgatcatgaatgttgtgtttaagaggattgattttgccatccaaaaaggcttagcggcgtagct 2898599  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    ||||  || |||| ||||||||||| ||||||||||    
T  2898598 tgttatccacttgtcttctattcaaatgtaaataat 2898563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 2764473 - 2764379
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    |||| ||| ||||| | |||||| ||||||| ||||||||| ||||||||||| |||| ||||| |||| |||||||||||||| ||| ||||||    
T  2764473 caaagggttatgcaaatcaatgttatgtctcttaggtccataaatgttgtgtttacgatgattgattttaccatccaaaaaggtttagcggcgca 2764379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 47459667 - 47459589
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    |||||||||||||| |||||||||| ||| || ||||||||||| ||||| |||| ||| ||||| |||||||||||||    
T  47459667 atgcatagcaatgttatgtctcctaagtctataaatgttgtgtttacgagaattgatttagccattcaaaaaggtctag 47459589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 277 - 391
Target Start/End: Original strand, 29170322 - 29170439
Alignment:
Q  277 tgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagt 373  Q
    |||||||||||||||||||||||| ||| || |  ||| ||||||||||  |||||||||||  || |||   ||||  || ||||||||||||||||||    
T  29170322 tgtctcctaggtccatgaatgttgcgtttacaacaatttgttttgccatttaaaaaggtctaacggtgcagtttgttatccacttgccttctattcaagt 29170421  T
Q  374 gtaaataattgtttatat 391  Q
    |||||||||  |||||||    
T  29170422 gtaaataataatttatat 29170439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 21934357 - 21934289
Alignment:
Q  267 agcaatgtcatgtctcctaggtccatgaatgtt-gtgttcacgaggattggttttgccatccaaaaagg 334  Q
    ||||||||  |||||||||| |||||||||||| || || | |||||||||||||||||||||||||||    
T  21934357 agcaatgttttgtctcctagttccatgaatgtttgtatttaagaggattggttttgccatccaaaaagg 21934289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 4862100 - 4862170
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggtttt 320  Q
    |||||| ||||||||||| |||||||| ||| | ||| ||||||||||||||| | |||||||||| ||||    
T  4862100 ttcaaagggtcatgcataacaatgtcacgtcccttagatccatgaatgttgtgattacgaggattgatttt 4862170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 11128368 - 11128446
Alignment:
Q  253 aaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaa 331  Q
    ||||||||||||||| |||||| |||||||||||||| || |||| |||||| || | |||| ||||| | ||||||||    
T  11128368 aaaaggtcatgcatatcaatgttatgtctcctaggtctataaatgatgtgtttacaatgatttgtttttctatccaaaa 11128446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 391
Target Start/End: Original strand, 17077971 - 17078071
Alignment:
Q  294 aatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttata 390  Q
    ||||||||||||| || |||||||||||||||| ||||| |||||  ||||||   ||||||||| ||| || ||||  |||| |||||||| |||||||    
T  17077971 aatgttgtgttcatgatgattggttttgccatctaaaaaagtctaacggcgcagattgttgcccgtttgtctgctatgtaagtataaataatggtttata 17078070  T
Q  391 t 391  Q
    |    
T  17078071 t 17078071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 29169904 - 29169940
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctag 286  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29169904 ttcaaaaggtcatgcacagcaatgtcatgtctcctag 29169940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 38731605 - 38731545
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgag 310  Q
    |||||| ||||||||| |  ||||||||| ||||||||||||||||| ||||||| |||||    
T  38731605 ttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgtttacgag 38731545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 391
Target Start/End: Complemental strand, 44270091 - 44270009
Alignment:
Q  312 attggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||| ||||| |||| ||||||||||| ||| |||   ||||||||||||| ||| ||||||| |||||||||| ||||||||    
T  44270091 attgattttgtcatctaaaaaggtctaatggtgcagtttgttgcccgcttgtcttttattcaaatgtaaataatggtttatat 44270009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 51067195 - 51067247
Alignment:
Q  279 tctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||||||||||| ||||| || |||||||||||| |||||| ||||||||||    
T  51067195 tctcctaggtccat-aatgtcgtattcacgaggattagttttgtcatccaaaaa 51067247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 5e-58; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 32546791 - 32546647
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       
T  32546791 ttcaaaaagtcatgcatagtaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagct 32546692  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  32546691 tgttgcccgcttgccttctattcaagtgtaaataatggtttatat 32546647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 53785705 - 53785561
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| || |||   ||     
T  53785705 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgtttacgaggattggttttgccatccaacaaggtccagcggcgtagct 53785606  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  53785605 tgttgcccgcttgccttctattcaagtgtaaataatggtttatat 53785561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 250 - 389
Target Start/End: Complemental strand, 44832 - 44687
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatg---ttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  44832 ttcaaaaggtcatgcatagcaatgtcatgtttcctaggtccatgaatgttgttgtgttcacaaggatttgttttgccatccaaaaaggtctagcggcgca 44733  T
Q  347 ---tgttgcccgcttgccttctattcaagtgtaaataattgtttat 389  Q
       |||||||||||||||||||||||||||||||||||| ||||||    
T  44732 gtttgttgcccgcttgccttctattcaagtgtaaataatggtttat 44687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 4763904 - 4764047
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |  ||||||||||||||||  | ||||||||       
T  4763904 ttcaaaaggttatgcatagcaatgtcatgtctcct-ggtccatgaatgttgtgtttacgaggattagaattgccatccaaaaaggcttggtggcgcaact 4764002  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  4764003 tgttgcccgcttgccttctattcaagtgtaaataatggtttatat 4764047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 52741623 - 52741767
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||||||||||||||||||||| |||||  || |||| ||||||| |||| |||||||||||||||||||||||| | ||||       
T  52741623 ttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatttatcttgtattcacgaagatttgttttgccatccaaaaaggtctagcgacgcaact 52741722  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    | ||||||||| |||||||||||||||||||||||| ||||||||    
T  52741723 tattgcccgctcgccttctattcaagtgtaaataatggtttatat 52741767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 261 - 382
Target Start/End: Complemental strand, 26772743 - 26772619
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||   |||||||||||    
T  26772743 atgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgct 26772644  T
Q  358 tgccttctattcaagtgtaaataat 382  Q
    ||||| ||||||| |||||| ||||    
T  26772643 tgcctcctattcatgtgtaagtaat 26772619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 39583340 - 39583475
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||       
T  39583340 ttcaaagggtcatgcatagcaatgtcatgtctcctaggttcatgaatgtcgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaact 39583439  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    ||||| | |||||| ||||||||| |||||| ||||    
T  39583440 tgttgtctgcttgctttctattcatgtgtaagtaat 39583475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 250 - 382
Target Start/End: Complemental strand, 13582506 - 13582371
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgc---a 346  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| ||||| ||| |||||||||||||| |||| | |||        
T  13582506 ttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagattgatttagccatccaaaaaggcctagcgacgctgtt 13582407  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    | ||||||||||||||||||||||||| ||||||||    
T  13582406 tattgcccgcttgccttctattcaagtctaaataat 13582371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 44198763 - 44198619
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||  |||| |||||||||||||||||||  || | |   ||     
T  44198763 ttcagaaggttatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttgcgataattgattttgccatccaaaaaggttgagcgacacagct 44198664  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||    
T  44198663 tgttgtccgcttgccttctattcaagtgtaaataataatttatat 44198619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 38671002 - 38671126
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||| ||||||   ||||| |||||    
T  38671002 atgcatagcaatgttatgtctcctaggtccatgaatgttgtgtgtacgaggattggttttgccatctaaaaaagtctagcggcgcagcttgttgtccgct 38671101  T
Q  358 tgccttctattcaagtgtaaataat 382  Q
    | ||| ||||| | |||||||||||    
T  38671102 tacctcctatttatgtgtaaataat 38671126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 250 - 366
Target Start/End: Original strand, 26856873 - 26856992
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||||||| |  |||||||||||||| ||||||||||||| |||| ||||||       
T  26856873 ttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgaggattggttttaccatccaaaaaggcctagcggcgcagct 26856972  T
Q  347 tgttgcccgcttgccttcta 366  Q
    |||||| |||||||||||||    
T  26856973 tgttgctcgcttgccttcta 26856992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 254 - 380
Target Start/End: Original strand, 37133114 - 37133243
Alignment:
Q  254 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgtt 350  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||| |  |||||||||||||| |||||||||||||||| ||||||   ||||    
T  37133114 aaaggtcatgcatagcaatgtcatgtctcctaagttaatgaatgttgtgtttataaggattggttttgcgatccaaaaaggtctagcggcgcagtttgtt 37133213  T
Q  351 gcccgcttgccttctattcaagtgtaaata 380  Q
    | ||  ||| |||||||||| |||||||||    
T  37133214 gtcccattgtcttctattcaggtgtaaata 37133243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 264 - 383
Target Start/End: Original strand, 4669788 - 4669910
Alignment:
Q  264 catagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgc 360  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||| ||||| |||||  |||||||||||| | | ||||||   ||||||||||||||    
T  4669788 cataacaatgtcatgtctccttggtccatgaatgttgtgtttacgatgattgattttgttatccaaaaaggtttggcggcgcagcttgttgcccgcttgc 4669887  T
Q  361 cttctattcaagtgtaaataatt 383  Q
    |||  ||| ||||||||||||||    
T  4669888 ctttgattaaagtgtaaataatt 4669910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 5338639 - 5338553
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    ||||||||||||||| |||||||||| |||||| ||||||   |||||||||||| |||||||||||||||||||||||||| |||||||    
T  5338639 ttcaaaaggtcatgcgtagcaatgtcttgtctcataggtc---gaatgttgtgtttacgaggattggttttgccatccaaaatggtctag 5338553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 4473049 - 4472970
Alignment:
Q  259 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||| ||||| |||||||||| |||||||||| |||||    
T  4473049 tcatgcatagcaatttcatgtctcctaggtctatgaatattgtgtttacgagaattggttttgtcatccaaaaaagtcta 4472970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 38146052 - 38145969
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||| ||||| |||| ||||||    
T  38146052 ttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgattgattttgtcatctaaaaag 38145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 382
Target Start/End: Complemental strand, 21552664 - 21552525
Alignment:
Q  250 ttcaaaaggtcatgcatagca----atgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgc 345  Q
    ||||||||||||||||||| |    || |||| |||||||||||||||||||||||||| || || |||||||||| |||||||||||   |   |||||    
T  21552664 ttcaaaaggtcatgcatagtacgtaatatcatatctcctaggtccatgaatgttgtgtttacaagaattggttttgacatccaaaaagacttgacggcgc 21552565  T
Q  346 a---tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    |   ||||||||| || |||||||||||||||||||||||    
T  21552564 aacttgttgcccgtttaccttctattcaagtgtaaataat 21552525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 382
Target Start/End: Complemental strand, 49017959 - 49017828
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||  ||||||||||    |||||| |||||||||||||| | |||||||| |||||||||||||||||     | || |||       
T  49017959 ttcaaaaggtcatgcatataaatgtcatgt----taggtcaatgaatgttgtgtttatgaggattgattttgccatccaaaaagtatcggcggtgcagct 49017864  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    ||||| ||||||||||||||||||||||||||||||    
T  49017863 tgttgtccgcttgccttctattcaagtgtaaataat 49017828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 284 - 391
Target Start/End: Complemental strand, 26276577 - 26276462
Alignment:
Q  284 taggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgc-----cttctattcaagtgt 375  Q
    ||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| || | |   ||||||||||||||     |||| ||||||||||    
T  26276577 taggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaagatctagcggtgtagcttgttgcccgcttgccttcacttcaattcaagtgt 26276478  T
Q  376 aaataattgtttatat 391  Q
    ||||||| ||||||||    
T  26276477 aaataatggtttatat 26276462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 25094683 - 25094767
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||| |||||||||||||||||| || |||  || ||||||||||||||||||||||| |||| ||||||| ||| |||||||    
T  25094683 ttcaaatggtcatgcatagcaatgtaatatcttttaagtccatgaatgttgtgttcacgaagattagttttgcaatctaaaaagg 25094767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 38978910 - 38978994
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||||||| ||||||| |||||||||||||| |||||  || ||||||||||| ||||  ||| |||||||||||||||||||    
T  38978910 ttcaaaaggtgatgcataacaatgtcatgtctcataggtttatcaatgttgtgtttacgaaaattagttttgccatccaaaaagg 38978994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 52412002 - 52412086
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||| ||||||||||| ||||||||||||||||||  |||| ||| ||||||| || | ||||| ||||||||||||||||||    
T  52412002 ttcaaagggtcatgcataacaatgtcatgtctcctagacccataaatattgtgtttacaatgattgattttgccatccaaaaagg 52412086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 3443423 - 3443506
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||| |||||||| ||| |||||| |||||||||  || |||||||||||||| |||| |||||||||||||||||| ||||    
T  3443423 ttcaaagggtcatgcgtaggaatgtcttgtctcctaaatctatgaatgttgtgtttacgatgattggttttgccatccacaaag 3443506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 7257681 - 7257751
Alignment:
Q  264 catagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    ||||||||| |||||| | |||||||||||||||||||||| |||| |||| |||||| ||| ||||||||    
T  7257681 catagcaatatcatgtattctaggtccatgaatgttgtgtttacgaagattagttttgtcattcaaaaagg 7257751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 383
Target Start/End: Complemental strand, 8592128 - 8592001
Alignment:
Q  258 gtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgccc 354  Q
    |||||||||| |||||||| | || |||||||||| ||| ||||||| | | |||||| |||||||||||||||||| | || ||||||   |||| |||    
T  8592128 gtcatgcatatcaatgtcacgccttctaggtccatcaatattgtgttta-gcggattgattttgccatccaaaaaggcccagcggcgcagcttgttaccc 8592030  T
Q  355 gcttgccttctattcaagtgtaaataatt 383  Q
     |||||||| |||||| |||||| |||||    
T  8592029 acttgccttatattcatgtgtaagtaatt 8592001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 25325025 - 25324943
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||| | |||||||||||||||||| || |||||  ||||||||| ||||| | |||| ||||| ||||||||||||||||    
T  25325025 ttcaaatgatcatgcatagcaatgtcaagtttcctaaatccatgaatattgtgcttacgatgattgcttttgccatccaaaaa 25324943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 37992322 - 37992237
Alignment:
Q  257 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtgg 342  Q
    ||||||||| || ||||||||| ||| || || |||||||||||||||  ||| ||||||||||  ||||||||||| ||||||||    
T  37992322 ggtcatgcacagtaatgtcatgactcgtacgtgcatgaatgttgtgttttcgaagattggttttatcatccaaaaagatctagtgg 37992237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 35484799 - 35484882
Alignment:
Q  258 gtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtg 341  Q
    |||||| ||| |||||||| |||| ||||||  |||||||||||||  || |||| |  |||||||||||||||||||||||||    
T  35484799 gtcatgtataacaatgtcaagtcttctaggtatatgaatgttgtgtctacaaggaataattttgccatccaaaaaggtctagtg 35484882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 26393812 - 26393882
Alignment:
Q  265 atagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggt 335  Q
    |||||||| | ||||||||| |||| |||||||||||||| |||||||||| | || |||||||| |||||    
T  26393812 atagcaatattatgtctccttggtctatgaatgttgtgtttacgaggattgatatttccatccaacaaggt 26393882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 368
Target Start/End: Complemental strand, 3643147 - 3643028
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||| | ||||||||| ||||||||||| |  |||||||||||||||||||||   || ||||| ||||| ||||| |||||| |||  | ||||       
T  3643147 ttcaaaggatcatgcataacaatgtcatgttttttaggtccatgaatgttgtgtt--tgatgattgattttgtcatccgaaaaggcctaacgacgcagct 3643050  T
Q  347 tgttgcccgcttgccttctatt 368  Q
    | ||||||||||||||||||||    
T  3643049 tattgcccgcttgccttctatt 3643028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 39661396 - 39661440
Alignment:
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||    
T  39661396 tgttgcccgcgtgctttctattcaagtgtaaataatggtttatat 39661440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 382
Target Start/End: Original strand, 46940903 - 46941019
Alignment:
Q  269 caatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttct 365  Q
    |||||||||| ||| ||||| ||||||||||||||| ||||  |||| |||||  ||||||||||  |||| || |||   ||||||| | || ||||||    
T  46940903 caatgtcatgactcataggttcatgaatgttgtgtttacgaaaattgattttgttatccaaaaagacctagcggtgcaacttgttgcctgtttaccttct 46941002  T
Q  366 attcaagtgtaaataat 382  Q
    ||||| |||||| ||||    
T  46941003 attcatgtgtaattaat 46941019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 54508504 - 54508574
Alignment:
Q  259 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaa 329  Q
    |||||| || |||| |||| ||| |||||||||||||||||||||| | ||  |||||||||| |||||||    
T  54508504 tcatgcgtaacaatatcatatctgctaggtccatgaatgttgtgtttaagataattggttttgtcatccaa 54508574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 4537677 - 4537593
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggt 335  Q
    |||||||||  ||||||||||||||  ||| | ||||||| ||||||||||| || | ||||||||||||  ||||| ||||||||    
T  4537677 ttcaaaagggtatgcatagcaatgttgtgttttctaggtctatgaatgttgt-tttaagaggattggtttcaccatctaaaaaggt 4537593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 32691003 - 32691060
Alignment:
Q  276 atgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||||||| ||| |||||||||||||| | |||||||| ||||  |||||||||||    
T  32691003 atgtctcctaagtctatgaatgttgtgtttaagaggattgattttatcatccaaaaag 32691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 1e-55; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 22589447 - 22589591
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       
T  22589447 ttcaaaaggtcatgcatagcaatgtcatgtctcataggtctatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagct 22589546  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  22589547 tgttgcccgcttgccttttattcaagtgtaaataatggtttatat 22589591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 250 - 377
Target Start/End: Complemental strand, 38815290 - 38815160
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||| ||||||       
T  38815290 ttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagct 38815191  T
Q  347 tgttgcccgcttgccttctattcaagtgtaa 377  Q
    |||||||||||||||||||||||| ||||||    
T  38815190 tgttgcccgcttgccttctattcatgtgtaa 38815160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 18804608 - 18804465
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| |||||||||| ||||||||| || || |||| |||| |||||||||||||||||||||||||||||||||| ||||||       
T  18804608 ttcaaaaggtcatgcataacaatgtcatgactcctaggttca-gagtgttttgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagct 18804510  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||    
T  18804509 tgttgcctgcttgccttctattcaagtgtaaataatggtttatat 18804465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 24125024 - 24124880
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| ||||||||||||  ||| |  | | ||||||       
T  24125024 ttcaaaaggtcatgcatagcaatgtcatgtctcataggtccatgaatgttgtgtttacaaggattagttttgccatccgtaaaagcttggcggcgcagct 24124925  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    | ||  |||||||||||||||||||||||||||||| ||||||||    
T  24124924 tttttgccgcttgccttctattcaagtgtaaataatggtttatat 24124880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 3187965 - 3187878
Alignment:
Q  251 tcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  3187965 tcaaagggttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtcta 3187878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 37514217 - 37514101
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| |||||| | ||||| |||||||||||||||||| ||||||||||||| | |||||| |||||||||||||  ||||||       
T  37514217 ttcaaaaggtcatgcatatcaatgttacgtctcttaggtccatgaatgttgtattcacgaggattgatcttgccacccaaaaaggtctaacggcgcagct 37514118  T
Q  347 tgttgcccgcttgcctt 363  Q
    |||||||||||||||||    
T  37514117 tgttgcccgcttgcctt 37514101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 18596759 - 18596854
Alignment:
Q  299 tgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||   ||||| | |||||||||||||||||||||||||||| ||||||||    
T  18596759 tgtgttcacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaaataatggtttatat 18596854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 261 - 391
Target Start/End: Complemental strand, 24451105 - 24450974
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||  ||||| ||||||   | ||| ||| |    
T  24451105 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgatgatt-gttttgccatcc-aaaatatctagcggcgcagcttattgtccgtt 24451008  T
Q  358 tgccttctattcaagtgtaaataattgtttatat 391  Q
    |  ||||||||||| |||||||||| ||||||||    
T  24451007 ttgcttctattcaattgtaaataatggtttatat 24450974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 39434661 - 39434567
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    |||| ||| ||||||| |||||| ||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  39434661 caaagggttatgcatatcaatgtaatgtctcttagatccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgca 39434567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 254 - 346
Target Start/End: Complemental strand, 4699863 - 4699771
Alignment:
Q  254 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    |||||||||| |||||||| | ||||| ||||||||||||||||||||||| || |||||| |||||||||||||||||||  ||||||||||    
T  4699863 aaaggtcatgaatagcaatattatgtcacctaggtccatgaatgttgtgtttacaaggattagttttgccatccaaaaaggcttagtggcgca 4699771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 6592571 - 6592483
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    ||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||| ||||| |||||||||| |||||| ||||||||||    
T  6592571 ttcaaaaggtcatgcatat-aatgtcatgtctcataggttcatgaatgttgtgtttacgagtattggttttgtcatccagaaaggtctag 6592483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 6618280 - 6618193
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||| |||| ||||| |||||||||| ||||||||||| ||||    
T  6618280 ttcaaaaggtcatgcatat-aatgtcatgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaagatcta 6618193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 4066829 - 4066758
Alignment:
Q  262 tgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    ||||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  4066829 tgcatagcaatgtaatgtgtcctaggtccatgactgttgtgttcacgatgattggttttaccatccaaaaag 4066758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 250 - 368
Target Start/End: Complemental strand, 43823985 - 43823864
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||| ||||||||||||||||||||||||||| || ||||| ||||||||||| |||   ||||| |||| |||| ||||||| ||||| |||||       
T  43823985 ttcaaatggtcatgcatagcaatgtcatgtctccgagatccattaatgttgtgtttacggcaattgggtttgtcatctaaaaaggcctagttgcgcaact 43823886  T
Q  347 tgttgcccgcttgccttctatt 368  Q
    | |||||| |||||||||||||    
T  43823885 ttttgccctcttgccttctatt 43823864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 8882320 - 8882258
Alignment:
Q  270 aatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||| |||||    
T  8882320 aatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattaattttgccatcaaaaaa 8882258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 287 - 391
Target Start/End: Complemental strand, 500201 - 500094
Alignment:
Q  287 gtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataatt 383  Q
    |||||||||||||||||| |||||||||| |||| |||| ||||||||  |   ||| ||   | ||||||||||||||||||||||||||||||||||     
T  500201 gtccatgaatgttgtgtttacgaggattgattttaccattcaaaaaggcttgacggcacagcttattgcccgcttgccttctattcaagtgtaaataatg 500102  T
Q  384 gtttatat 391  Q
    ||||||||    
T  500101 gtttatat 500094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 42659212 - 42659135
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    |||||||||||| | |||||| |||||| ||||||||||||||| |||||||||  ||||| ||||||||||||||||    
T  42659212 atgcatagcaatattatgtcttctaggttcatgaatgttgtgtttacgaggattaattttgtcatccaaaaaggtcta 42659135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 3821220 - 3821155
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattg 315  Q
    |||||| ||| |||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||    
T  3821220 ttcaaagggtaatgcatagcaatgtcatgtctcctaggttcataaatgttatgtttacgaggattg 3821155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 9259412 - 9259485
Alignment:
Q  259 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    ||||||||||||||||||| | ||||| ||||||||||||||| || |||| ||||| ||||| ||||||||||    
T  9259412 tcatgcatagcaatgtcatatatcctaagtccatgaatgttgtatttacgaagattgattttgtcatccaaaaa 9259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 4073522 - 4073448
Alignment:
Q  258 gtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||||||||||||||||||| ||| || ||| ||||||||||||| ||||| |||| ||||  ||||||||||    
T  4073522 gtcatgcatagcaatgtcatgtttccaagatccgtgaatgttgtgtttacgagaattgattttatcatccaaaaa 4073448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 25021925 - 25022007
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||| ||||||||| | ||||||||| ||||||||||||| |||||||||||| || | ||||| ||||  ||||||||||    
T  25021925 ttcaaagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttacaatgattgattttatcatccaaaaa 25022007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 24350880 - 24350963
Alignment:
Q  297 gttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gcatgttgcccgcttgccttctattcaagtgtaa 377  Q
    |||||||| |||||||||||||||||| |||||||| | ||||||||   || ||||||||||||  |||||||||| ||||||    
T  24350880 gttgtgtttacgaggattggttttgccctccaaaaaagcctagtggcccagcctgttgcccgcttatcttctattcatgtgtaa 24350963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 121835 - 121903
Alignment:
Q  253 aaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttg 321  Q
    ||||| ||||||||| ||||||||||||  ||| ||||||| |||||||||| |||||||||| |||||    
T  121835 aaaagatcatgcatatcaatgtcatgtcatctaagtccatggatgttgtgtttacgaggattgattttg 121903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 1187411 - 1187447
Alignment:
Q  355 gcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||||||||||||||||||||||||    
T  1187411 gcttgccttctattcaagtgtaaataattgtttatat 1187447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 28196188 - 28196105
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||| | ||||||| | |||||||||||||||||| |||| | |||||||||| ||| | |||| ||||| |||||||||||    
T  28196188 ttcaaaggatcatgcacaacaatgtcatgtctcctagatccacggatgttgtgtttacgggaattgattttgtcatccaaaaag 28196105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 24320293 - 24320244
Alignment:
Q  290 catgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    ||||||||||||||| |||||||||| |||||  ||||||||||||||||    
T  24320293 catgaatgttgtgtttacgaggattgattttgatatccaaaaaggtctag 24320244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 5329713 - 5329797
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||| ||||||| | | |||| |||||||||||| ||| || ||||||||||| | |||||||  ||||| ||||||||||||    
T  5329713 ttcaaagggtcatggacaacaatatcatgtctcctatgtctatcaatgttgtgtttatgaggattaattttgacatccaaaaagg 5329797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 8227984 - 8228028
Alignment:
Q  288 tccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||||    
T  8227984 tccatgaatgttgtgtttacgaggaatggttttgctatccaaaaa 8228028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 44337272 - 44337201
Alignment:
Q  313 ttggttttgccatccaaaaaggtctagtggc--gcatgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    |||||||||||||||||||||||| || |||  || |||||| ||||||||| ||||||| |||||| ||||    
T  44337272 ttggttttgccatccaaaaaggtccagcggccagcttgttgctcgcttgcctcctattcatgtgtaagtaat 44337201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 26732980 - 26733018
Alignment:
Q  353 ccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  26732980 ccgcttgccttctattcaaaggtaaataattgtttatat 26733018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 6792245 - 6792176
Alignment:
Q  270 aatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    ||||||||||||| || |||||| ||||||||||| ||||  |||||||||| |||| | |||| |||||    
T  6792245 aatgtcatgtctcataagtccataaatgttgtgtttacgaatattggttttgtcatcaagaaagatctag 6792176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 1e-55; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 4413177 - 4413321
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||       
T  4413177 ttcaaaaggtcatgcatagcaaagtcatgtctcctaggtccatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcggcgcagct 4413276  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  4413277 tgttgcccacttgccttctattcaagtgtaaataattgtttatat 4413321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 41868019 - 41868162
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||       
T  41868019 ttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggattggttttgcca-ccaaaaagatctagcggcgcaact 41868117  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||    
T  41868118 tgttgcccgcttgctttctattcaagtgtaaataatggtttatat 41868162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 9685526 - 9685670
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||       
T  9685526 ttcaaaaggtcatggatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacaaagattgtttttgccatccaaaaaggtctagcggcgcagct 9685625  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||||| ||||||| |||||| |||  |||||||    
T  9685626 tgttgcccgcttgccttatattcaaatgtaaacaataatttatat 9685670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 17344634 - 17344490
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||||||  ||||||       
T  17344634 ttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttttcgatccaaaaaggtctatcggcgcagct 17344535  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||    
T  17344534 tgttgccggcttgccttctattcaagtgtaaataatgatttatat 17344490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 13413347 - 13413203
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||  |||   ||     
T  13413347 ttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttatgagaattggttttgccatccaaaaaggcctaacggctcagct 13413248  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||    
T  13413247 tgttgtccgcttgtcttctattcaagtgtaaataatggtttatat 13413203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 18745065 - 18745209
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||| ||||||||||||||||||| | ||||||||| |||||||||||||| |  ||||||||||||||||||||||||||||||| ||||||       
T  18745065 ttcaaaagatcatgcatagcaatgtcatatttcctaggtctatgaatgttgtgtttataaggattggttttgccatccaaaaaggtctagcggcgcagct 18745164  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    | |||| |||||| |||||||||||||||||||||| ||||||||    
T  18745165 tattgctcgcttgtcttctattcaagtgtaaataatggtttatat 18745209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 278 - 391
Target Start/End: Original strand, 15515286 - 15515402
Alignment:
Q  278 gtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtg 374  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||| ||||||   ||||||| | |||||||||| |||||||    
T  15515286 gtctcctaggtccaccaatgttgtgttcacgaggattggttttgccatccaaaaaagtctagcggcgcagtttgttgcctgtttgccttctactcaagtg 15515385  T
Q  375 taaataattgtttatat 391  Q
    |||||||| ||||||||    
T  15515386 taaataatggtttatat 15515402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 3208406 - 3208498
Alignment:
Q  301 tgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttata 390  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||   |||||||||||||||||||||||||||||||||||| |||||||    
T  3208406 tgtttacgaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataatggtttata 3208498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 19161894 - 19162029
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||  ||||||||| ||||| |||||||||||   ||||||||||       
T  19161894 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcaatgaatagtgtgttttcgaggattgattttgtcatccaaaaagacgtagtggcgcagct 19161993  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    || || |||||||| |||||||||| ||||||||||    
T  19161994 tgctgtccgcttgctttctattcaaatgtaaataat 19162029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 27502356 - 27502268
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagt 340  Q
    |||| ||| |||||||||||| ||||||||||||| || |||||||||||||| |||| ||||| |||||| |||||||||||||||||    
T  27502356 caaagggttatgcatagcaatatcatgtctcctagatctatgaatgttgtgtttacgaagattgattttgcaatccaaaaaggtctagt 27502268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 27494292 - 27494184
Alignment:
Q  265 atagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgcc 361  Q
    |||||||||| |||||||||| ||| |||||| ||||||| ||||  |||||||||||||||||||||||||||  ||||||   ||||||| |||||||    
T  27494292 atagcaatgttatgtctcctaagtctatgaatattgtgtttacgaatattggttttgccatccaaaaaggtctaacggcgcagcttgttgcctgcttgcc 27494193  T
Q  362 ttctattca 370  Q
    | |||||||    
T  27494192 tcctattca 27494184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 42122763 - 42122669
Alignment:
Q  300 gtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| ||||||| ||||||||||||||||||| |||||| ||||||   | |||  ||||||||||||||||||||||||||||| ||||||||    
T  42122763 gtgtttacgaggactggttttgccatccaaaaaagtctagcggcgcagcttattgttcgcttgccttctattcaagtgtaaataatggtttatat 42122669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 28224970 - 28224873
Alignment:
Q  276 atgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattca 370  Q
    |||||||||||||| |||||||||||||| | || |||| |||||||||||||||||||||||| ||||||   | ||||||||||| || |||||||    
T  28224970 atgtctcctaggtcaatgaatgttgtgtttatgaagatttgttttgccatccaaaaaggtctagcggcgcagcttattgcccgcttgtctcctattca 28224873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 41702209 - 41702133
Alignment:
Q  309 aggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    |||||||||||||||||||||||||| |||||||||||   |||||||| ||||||||||||||| |||||| ||||    
T  41702209 aggattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaagtaat 41702133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 20143119 - 20143200
Alignment:
Q  313 ttggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||||||||||||||| ||||||   ||||| | | ||||||||||||||| |||||||||| ||||||||    
T  20143119 ttggttttgccatccaaaaaggtctagcggcgcaacttgttgtctgtttgccttctattcaaatgtaaataatggtttatat 20143200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 23485047 - 23485129
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||| |||||||| || |  ||||||||||||| |||||||    
T  23485047 ttcaaaagatcatgcataacaatgctatgtctcctaggtccatgaacgttgtgtttacaaaaattggttttgccaaccaaaaa 23485129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 44686410 - 44686348
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggatt 314  Q
    |||| ||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  44686410 caaagggttatgcatagcaatgttatgtctcctaggtccgtgaatgttgtgtttacgaggatt 44686348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 20142871 - 20142935
Alignment:
Q  256 aggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttg 321  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||||| ||||| ||||||||||    
T  20142871 aggtcatgcataacaatgtcatgtctcctaggt-catggatgttgtgttgacgagtattggttttg 20142935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 382
Target Start/End: Complemental strand, 30602429 - 30602350
Alignment:
Q  306 acgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    ||||||||||||||||||||||||||||| ||||  |||||   |||||||||| ||||||||||||| |||||| ||||    
T  30602429 acgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaattaat 30602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 2886726 - 2886871
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattg-gttttgccatccaaaaa-ggtct---agtggcg 344  Q
    ||||||||  ||||||||||||| |||| |||| | ||||||| ||||||||||| | ||||||||  ||||| |||||||||| |||||   ||||  |    
T  2886726 ttcaaaagagcatgcatagcaatatcatatctcgt-ggtccataaatgttgtgtttatgaggattgatttttgtcatccaaaaagggtctgacagtgcag 2886824  T
Q  345 catgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    | ||||||| |||||  ||||||||||||||||||||| ||||||||    
T  2886825 cttgttgcctgcttgtattctattcaagtgtaaataatggtttatat 2886871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 3825713 - 3825639
Alignment:
Q  259 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| | || ||| | ||||| |||||||||||    
T  3825713 tcatgcatagcaatgtcatgtcttctaggaccataaatgttgtgtttatgaagatcgattttgtcatccaaaaag 3825639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 16351955 - 16352037
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||| ||||||||| | |||||||||||||| ||||| ||||||| || |||| |||| ||||| |||||||||| |||||    
T  16351955 ttcaaatggtcatgcacaacaatgtcatgtctcttaggtacatgaatattatgtttacgatgattgtttttgccatctaaaaa 16352037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 1296188 - 1296276
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    |||||| |||||||||||| ||| |||||| ||||  ||| ||||||||| |||| | ||| ||||||||| | |||||||||||||||    
T  1296188 ttcaaagggtcatgcatagtaatatcatgtttcctgtgtctatgaatgttttgtttatgagaattggttttacaatccaaaaaggtcta 1296276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 11921348 - 11921404
Alignment:
Q  283 ctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    |||||||||||||||||||||| || |||||| |||| ||||||||||||| |||||    
T  11921348 ctaggtccatgaatgttgtgtttactaggattagtttcgccatccaaaaagatctag 11921404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 302 - 391
Target Start/End: Complemental strand, 2248586 - 2248494
Alignment:
Q  302 gttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| || |||||||||| ||||| |||||| || || ||| ||   |||| |||||||||||||| |||||||||||||||| ||||||||    
T  2248586 gttcatgatgattggttttaccatctaaaaagatccagcggcacaatctgttacccgcttgccttctgttcaagtgtaaataatggtttatat 2248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 13845391 - 13845435
Alignment:
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||    
T  13845391 tgttgcccgcttgctttctattcatgtgtaaataattttttatat 13845435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 33612670 - 33612710
Alignment:
Q  264 catagcaatgtcatgtctcctaggtccatgaatgttgtgtt 304  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  33612670 catagcaatgtcttgtcccctaggtccatgaatgttgtgtt 33612710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 391
Target Start/End: Complemental strand, 1472386 - 1472347
Alignment:
Q  352 cccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  1472386 cccgtttgccttctattcaagtgtaaataatggtttatat 1472347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 20142836 - 20142875
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtc 289  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  20142836 ttcaaaaggtcatacataacaatgtcatgtctcctaggtc 20142875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 24765255 - 24765208
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 299  Q
    |||| |||||| |||| |||||||||||||| ||||||||||||||||    
T  24765255 caaagggtcatccataacaatgtcatgtctcttaggtccatgaatgtt 24765208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 10296638 - 10296720
Alignment:
Q  251 tcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    ||||| ||| ||| || ||||||| ||||  |||| ||||||| |||||| ||| | ||||||| ||||||||||||||||||    
T  10296638 tcaaagggtaatgtatggcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattagttttgccatccaaaaag 10296720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 110; Significance: 5e-55; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 251 - 391
Target Start/End: Complemental strand, 103101 - 102958
Alignment:
Q  251 tcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---t 347  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||   |    
T  103101 tcaaaaggtcatgcataacaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcaactt 103002  T
Q  348 gttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  103001 gttgcccgcttgccttctattcaagtgtaaataatggtttatat 102958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 7e-51; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 21326949 - 21327093
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||       
T  21326949 ttcaaaaggtcatgcatagcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaaggtctaacggcgcagct 21327048  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| | |||||||||||||||||||||||||||| ||||||||    
T  21327049 tgttgtctgcttgccttctattcaagtgtaaataatggtttatat 21327093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 19277289 - 19277143
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt--cacgaggattggttttgccatccaaaaaggtctagtggcgca- 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||| ||||||     
T  19277289 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacacgaaaattggttttgccatccaaaaaggtctagcggcgcag 19277190  T
Q  347 --tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
      | |||||||| |||||||||||||| |||||||||| ||||||||    
T  19277189 cttattgcccgcctgccttctattcaaatgtaaataatggtttatat 19277143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 25187042 - 25187186
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | ||||| |||| ||||| |||||| ||||| ||||||       
T  25187042 ttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgtgttcccaatgattgattttaccatctaaaaagatctagcggcgcagct 25187141  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  25187142 tgttgcccgcttgccttctattcaagtgtaaataatggtttatat 25187186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 45613953 - 45614097
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||| ||||||||| ||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||       
T  45613953 ttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccgaaaaggtctagcggcgcagct 45614052  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||    
T  45614053 tgttgtccgcttgccttctattcaactgtaaataatggtttatat 45614097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 982945 - 982801
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |   ||     
T  982945 ttcaaaaggtcatgcatatcaatgtcatgtcttctatgtccatgaatgttgtgttcacgaggattggtattgccatccaaaaaggtctagcgacacagct 982846  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||| | ||||||||||||||||| |||||||| ||||||||    
T  982845 tgttgcctgtttgccttctattcaagtttaaataatggtttatat 982801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 48539175 - 48539094
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48539175 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 24527585 - 24527436
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||       
T  24527585 ttcaaaaggtcatgcatagcaatgtcatttctccttggtccatgaatgttgtattcacgaggattggttttgtcatccaaaaagatctagcggcgcagct 24527486  T
Q  347 tgttgccc-----gcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||| |||     ||||||||| ||||||||||||||||||  |||||||    
T  24527485 tgttacccacttagcttgccttttattcaagtgtaaataatgatttatat 24527436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 4501255 - 4501111
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| | |||| |||| ||||||||||||  |||||       
T  4501255 ttcaaaagttcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggattagctttgtcatctaaaaaggtctagcagcgcatct 4501156  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    | ||| ||||||||||| |||||||||||||||||| ||||||||    
T  4501155 tattgtccgcttgccttatattcaagtgtaaataatggtttatat 4501111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 267 - 391
Target Start/End: Original strand, 27027758 - 27027885
Alignment:
Q  267 agcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgcctt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| || | |   |||| ||| ||||||||    
T  27027758 agcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgctatccaaaaagatctagcggtgtagcttgttacccacttgcctt 27027857  T
Q  364 ctattcaagtgtaaataattgtttatat 391  Q
    ||||||||  ||||||||| ||||||||    
T  27027858 ctattcaaacgtaaataatagtttatat 27027885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 45974731 - 45974854
Alignment:
Q  271 atgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctat 367  Q
    |||||||||||||||||| ||||||||||||||| || |||||   ||||| ||||||||||||||||||||||||   ||||| ||||||| |||||||    
T  45974731 atgtcatgtctcctaggttcatgaatgttgtgtttacaaggataaattttgtcatccaaaaaggtctagtggcgcagcttgttgtccgcttgtcttctat 45974830  T
Q  368 tcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||| ||||||||    
T  45974831 tcaagtgtaaataatggtttatat 45974854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 27521467 - 27521323
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||| ||||| || |    |||||       
T  27521467 ttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggattgattttgccatcgaaaaatgtatgacagcgcaggc 27521368  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||| |||  |||||||| ||||||||||||||||| ||||||||    
T  27521367 tgttacccatttgccttccattcaagtgtaaataatggtttatat 27521323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 45003019 - 45003143
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||   | ||| |||||    
T  45003019 atgcatagcaatgttatgtctcataggaccatgaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgct 45003118  T
Q  358 tgccttctattcaagtgtaaataat 382  Q
    ||||| ||||||| |||||| ||||    
T  45003119 tgcctcctattcatgtgtaagtaat 45003143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 41117884 - 41117977
Alignment:
Q  253 aaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||| || ||||||    
T  41117884 aaaagatcatgcatagcaatgtcatgtttcctaggtccatgaatgttgtgttcacgatgattgattttgctatccaaaaaagtccagcggcgca 41117977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 28517400 - 28517487
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    |||| ||| ||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  28517400 caaagggttatgcataacaatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaagtctag 28517487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 22197982 - 22197839
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||| ||||  |||| ||||| ||||||||||||  | | || |||       
T  22197982 ttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaact 22197884  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||||    
T  22197883 tgttgcccgcttgtcttctattcaagagtaaataatggtttatat 22197839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 22239839 - 22239982
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||| ||||  |||| ||||| ||||||||||||  | | || |||       
T  22239839 ttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaact 22239937  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||||    
T  22239938 tgttgcccgcttgtcttctattcaagagtaaataatggtttatat 22239982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 5825258 - 5825139
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    |||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||||   ||||||   |||| || |||    
T  5825258 atgcatagcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggttttgccatcgaaaaaggtcttacggcgcagcttgttacctgct 5825159  T
Q  358 tgccttctattcaagtgtaa 377  Q
    ||||| ||||||| ||||||    
T  5825158 tgcctcctattcatgtgtaa 5825139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 30216169 - 30216252
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||| ||| |||||||    
T  30216169 ttcaaatggtcatgcatagcaatgtcatatctcctaggtctatgaatgttgtgttcacgaggatcgattttgtcattcaaaaag 30216252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 5972327 - 5972470
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||| ||||||||||| |||||||| ||||| || || |||||||||||||| ||||||||| ||||||||||||||||||  |||  |  |||       
T  5972327 ttcaaaatgtcatgcatagtaatgtcatttctcccagatctatgaatgttgtgtttacgaggattagttttgccatccaaaaagacctaacgatgcaact 5972426  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttata 390  Q
    | || ||||  ||||||||||||||||||||||||| |||||||    
T  5972427 tatttcccgtatgccttctattcaagtgtaaataatagtttata 5972470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 260 - 383
Target Start/End: Complemental strand, 10905104 - 10904978
Alignment:
Q  260 catgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgc 356  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| | |  ||||||||||||  ||||| |||||   |||| ||| |    
T  10905104 catgcataacaatgtcatgtctcctaggtccatgaatgtcgtgtttacaaggattgatctgaccatccaaaaagacctagtagcgcagcttgttaccctc 10905005  T
Q  357 ttgccttctattcaagtgtaaataatt 383  Q
    |||| ||||||||| ||||||||||||    
T  10905004 ttgcattctattcatgtgtaaataatt 10904978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 43333941 - 43334086
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| ||||| |||||||||||| || |||||||||| ||| | || ||||||||||||||| |||||||   | | ||||||       
T  43333941 ttcaaaaggtcatgcatatcaatgacatgtctcctagatctatgaatgttgagtttatgatgattggttttgccattcaaaaagacttggcggcgcagct 43334040  T
Q  347 tgttg-cccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| |||  |||| ||||||||||||||||||||| ||||||||    
T  43334041 tgttgccccttttgcattctattcaagtgtaaataatggtttatat 43334086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 34772778 - 34772635
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||| |||||||||| ||||||||||| | |||||||||||||| ||||||| ||||  |||||||||||||| |||||| || ||  ||||||       
T  34772778 ttcaaaaagtcatgcatatcaatgtcatgttttctaggtccatgaatattgtgtttacgataattggttttgccattcaaaaaagtttaacggcgcaatt 34772679  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||  | ||||| |||||||| ||||||||||||| ||||||||    
T  34772678 tgttatctgcttgtcttctatt-aagtgtaaataatagtttatat 34772635  T

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Target: chr7; HSP #23
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 252 - 377
Target Start/End: Original strand, 40726593 - 40726721
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||| ||| ||||||| |||||  ||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||| |||||    ||||   ||    
T  40726593 caaagggttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgaggattgattttgccatccaaaaatgtctaacatcgcagcttg 40726692  T
Q  349 ttgcccgcttgccttctattcaagtgtaa 377  Q
    |||||||||||||| ||||||| ||||||    
T  40726693 ttgcccgcttgcctcctattcatgtgtaa 40726721  T

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Target: chr7; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 23037541 - 23037457
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||| ||| ||||||||||||||||| |||| |||||| |||||| ||||||| |||||||||| |||||||||| |||||||    
T  23037541 ttcaaagggttatgcatagcaatgtcatttctcttaggtctatgaattttgtgtttacgaggattgattttgccatctaaaaagg 23037457  T

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Target: chr7; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 43856870 - 43856788
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||| ||||||||| | |||||||||| |||||||||||||||||||| |||| ||||| |||| |||||| |||||||||    
T  43856870 ttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgattttgctatccaaaaa 43856788  T

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Target: chr7; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 42295295 - 42295432
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgcatgt 349  Q
    |||||||  ||||||||| || ||||||||||||||||||||||||| ||||||| |||| |||| ||||||  ||||||||||    | | |   | ||    
T  42295295 ttcaaaatatcatgcataacattgtcatgtctcctaggtccatgaatcttgtgtttacgatgattagttttgttatccaaaaag----acttgataacgt 42295390  T
Q  350 tgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    || ||||||||||||||||||| | |||||||| ||||||||    
T  42295391 tgtccgcttgccttctattcaaatataaataatggtttatat 42295432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 38839313 - 38839234
Alignment:
Q  259 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    ||||||||| ||||||||||| |   |||||||||||||||||||| |||| |||||||||| ||||||||||| |||||    
T  38839313 tcatgcataacaatgtcatgtttatcaggtccatgaatgttgtgtttacgaagattggttttaccatccaaaaatgtcta 38839234  T

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Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 5715032 - 5714954
Alignment:
Q  254 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    ||||||||| |||| |||||| ||||||||||||||||| ||||||||||| | || ||||||||||| |||| |||||    
T  5715032 aaaggtcatacataacaatgttatgtctcctaggtccataaatgttgtgtttatgaagattggttttgtcatctaaaaa 5714954  T

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Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 252 - 367
Target Start/End: Complemental strand, 32584594 - 32584476
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||||| ||||||||| |||||| ||||||| ||| || |||||||||||||| || | ||||| |||| ||||||||||||| ||||  |||||   ||    
T  32584594 caaaagatcatgcatatcaatgttatgtctcatagatcgatgaatgttgtgtttacaaagattgattttaccatccaaaaaggcctagcagcgcaacttg 32584495  T
Q  349 ttgcccgcttgccttctat 367  Q
    | |||||||||| ||||||    
T  32584494 tcgcccgcttgctttctat 32584476  T

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Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 344
Target Start/End: Complemental strand, 2904353 - 2904283
Alignment:
Q  273 gtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcg 344  Q
    |||||| |||||||||| |||||||||||||| ||||  ||||||||||| |||||||||||| ||||||||    
T  2904353 gtcatgactcctaggtctatgaatgttgtgtttacgataattggttttgctatccaaaaaggt-tagtggcg 2904283  T

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Target: chr7; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 38766258 - 38766185
Alignment:
Q  312 attggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    ||||||||||||||||||||||||||||  |||||   |||||||||||||||| ||||||| |||||| ||||    
T  38766258 attggttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 38766185  T

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Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 48539283 - 48539322
Alignment:
Q  352 cccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  48539283 cccgcttgccttctattcaagtgtaaataatggtttatat 48539322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 9281266 - 9281331
Alignment:
Q  269 caatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||||||| ||| || |||||| ||||||||||| | ||| ||||||||||| |||||||||||    
T  9281266 caatgtcatgactcttaagtccattaatgttgtgtttaggagaattggttttgcaatccaaaaagg 9281331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 9292237 - 9292302
Alignment:
Q  269 caatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||||||| ||| || |||||| ||||||||||| | ||| ||||||||||| |||||||||||    
T  9292237 caatgtcatgactcttaagtccattaatgttgtgtttaggagaattggttttgcaatccaaaaagg 9292302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 36558985 - 36559061
Alignment:
Q  257 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||||||||  ||| ||||||||  ||||||||||||||||||||| |||| || || |||||| ||| ||||||    
T  36558985 ggtcatgcatataaatatcatgtcttataggtccatgaatgttgtgtttacgatgaatgattttgctatctaaaaag 36559061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 29054816 - 29054761
Alignment:
Q  279 tctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    ||||||||||| |||||||| || || | ||||||||||||||||||||| |||||    
T  29054816 tctcctaggtctatgaatgtagtttttaagaggattggttttgccatccataaagg 29054761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 376
Target Start/End: Complemental strand, 32336359 - 32336279
Alignment:
Q  294 aatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgta 376  Q
    |||||||||||||| | ||||| |||||||||||||||||     ||||||||   | ||||||||||||||||||||||| ||||    
T  32336359 aatgttgtgttcacaaagattgattttgccatccaaaaag-----gtggcgcaactttttgcccgcttgccttctattcaactgta 32336279  T

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Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 391
Target Start/End: Original strand, 32682023 - 32682058
Alignment:
Q  356 cttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||||||||||||||||||||||| ||||||||    
T  32682023 cttgccttctattcaagtgtaaataatggtttatat 32682058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 38766294 - 38766259
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaat 296  Q
    |||||||||||||| |||||||||||||||||||||    
T  38766294 atgcatagcaatgttatgtctcctaggtccatgaat 38766259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 44525970 - 44525927
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 304  Q
    ||||||| |||||||||||||||||  |||||||||||||||||    
T  44525970 atgcataacaatgtcatgtctcctatatccatgaatgttgtgtt 44525927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 6635086 - 6635128
Alignment:
Q  262 tgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 304  Q
    |||||| |||||||||||||||||| ||||| |||||||||||    
T  6635086 tgcataacaatgtcatgtctcctagatccataaatgttgtgtt 6635128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 30940843 - 30940987
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||       
T  30940843 ttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcgacgcagct 30940942  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  30940943 tgttgcccgcttgccttctattcaagtgtaaataatggtttatat 30940987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 252 - 382
Target Start/End: Complemental strand, 3329990 - 3329857
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||   ||    
T  3329990 caaagggttatgcatagcaatgttatgtctcctaggtccatgaatgctgtgtttacgatgattggttttgccatccaaaaaggtctagcggcgcagcttg 3329891  T
Q  349 ttgcccgcttgccttctattcaagtgtaaataat 382  Q
    |||||||||||||| ||||||| |||||| ||||    
T  3329890 ttgcccgcttgcctcctattcacgtgtaagtaat 3329857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 53170509 - 53170365
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctccta--ggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca- 346  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||  | |||     
T  53170509 ttcaaaaggtcatgcatagcaatgtcatgtctcctataggtc-atgaatgttgtgttcacgaggattgattttgctatctaaaaaggtctagcagtgcag 53170411  T
Q  347 -tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
     ||||| | ||||||||||||||||| |||||||||| ||||||||    
T  53170410 ctgttgtctgcttgccttctattcaaatgtaaataatggtttatat 53170365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 600803 - 600947
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||||||||||||| ||| | |||||||||||||||||||||| |||| |||||| |||| |||| ||||||||||||||||| || ||| | |   ||     
T  600803 ttcaaaaggtcatgtataactatgtcatgtctcctaggtccattaatgctgtgtttacgatgattagttttgccatccaaaaatgtatagcgacgtagct 600902  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  600903 tgttgtccgcttgccttctattcaagtgtaaataattgtttatat 600947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 16955456 - 16955312
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||| |||||| ||    | ||||       
T  16955456 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgaggattgatttggccatcaaaaaagatccgacgacgcagtt 16955357  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||    
T  16955356 tgttgtccgcttgccttctactcaagtgtaaataatggtttatat 16955312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 39001382 - 39001263
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    ||||||| ||||||  |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||   |||||||||||    
T  39001382 atgcataacaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaaaaggtctagcggcgcagtttgttgcccgct 39001283  T
Q  358 tgccttctattcaagtgtaa 377  Q
    ||||| ||||||| ||||||    
T  39001282 tgcctcctattcatgtgtaa 39001263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 34107807 - 34107942
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    ||||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| || ||  |||   ||     
T  34107807 ttcaaaaagtcatgcataacaatgttatgtctcctagatccatgaatgttgtgttcacgaggattggttttgtcatccaaaaaagtttaacggcacagct 34107906  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    |||||||| ||||  |||||||||||||||||||||    
T  34107907 tgttgcccacttgttttctattcaagtgtaaataat 34107942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 50001039 - 50001172
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||| ||| |||||||||||||| ||||||||||| ||||| ||||||||||| |||| ||||| ||||||||||||||||| ||||| ||||||   ||    
T  50001039 caaagggttatgcatagcaatgttatgtctcctagatccataaatgttgtgtttacgaagattgattttgccatccaaaaagatctagcggcgcagcttg 50001138  T
Q  349 ttgcccgcttgccttctattcaagtgtaaataat 382  Q
    |||||||||||||| ||||||| |||||| ||||    
T  50001139 ttgcccgcttgcctcctattcatgtgtaagtaat 50001172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 250 - 370
Target Start/End: Complemental strand, 4419259 - 4419137
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||| ||| ||||||| |||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||  ||||| ||||||       
T  4419259 ttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattggttttgccatccaaaaa-atctagcggcgcagct 4419161  T
Q  347 tgttgcccgcttgccttctattca 370  Q
    |||||||||||||||| |||||||    
T  4419160 tgttgcccgcttgcctcctattca 4419137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 261 - 382
Target Start/End: Complemental strand, 53619571 - 53619447
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||   |||||||  ||    
T  53619571 atgcataacaatgttatgtctcttaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctact 53619472  T
Q  358 tgccttctattcaagtgtaaataat 382  Q
    | ||| ||||||| |||||| ||||    
T  53619471 tacctcctattcatgtgtaagtaat 53619447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 278 - 382
Target Start/End: Complemental strand, 31847071 - 31846964
Alignment:
Q  278 gtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtg 374  Q
    |||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||||||| ||||||   |||||||||||||||| ||||||| |||    
T  31847071 gtctcctaggtccatgaatgttgtgttagcgaggattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgtg 31846972  T
Q  375 taaataat 382  Q
    ||| ||||    
T  31846971 taagtaat 31846964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 40392723 - 40392809
Alignment:
Q  308 gaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||||||||||||||||||| ||||||   ||||| |||||||||||||||||||||||||||||| ||||||||    
T  40392723 gaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataatggtttatat 40392809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 250 - 382
Target Start/End: Complemental strand, 26521484 - 26521350
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||||| |||||||| |||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||| ||| |||   ||     
T  26521484 ttcaaagggtcatgcgtagcaatgtcatgtatcctaggcccatga-tgttgtgtttacgaggattggttttgtcatccaaaaaggtttagcggcacagct 26521386  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    | ||| ||||||||||||||| || |||||| ||||    
T  26521385 ttttgtccgcttgccttctatccatgtgtaagtaat 26521350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 25504288 - 25504206
Alignment:
Q  253 aaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggt 335  Q
    |||||||||||||||| ||||||||||||| ||||||||||||| ||||||| | |||||||| ||||||||| |||||||||    
T  25504288 aaaaggtcatgcatagtaatgtcatgtctcataggtccatgaatattgtgtttatgaggattgcttttgccattcaaaaaggt 25504206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 269 - 369
Target Start/End: Original strand, 50442609 - 50442712
Alignment:
Q  269 caatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttct 365  Q
    |||||| ||||||||||||| |||| |||||||||| | |||||||||||||||||||||||||||  ||||||||||   ||||||||||||| ||||     
T  50442609 caatgttatgtctcctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgcttgtcttcc 50442708  T
Q  366 attc 369  Q
    ||||    
T  50442709 attc 50442712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 23255707 - 23255586
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||| ||| ||||||| |||||| |||||||||| |||||||||| ||||||| |||||||||| |||||||||||| ||| |||||| ||||||   ||    
T  23255707 caaagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgaggattgattttgccatccagaaaagtctagcggcgcagcttg 23255608  T
Q  349 ttgcccgcttgccttctattca 370  Q
    ||| |||||| ||| |||||||    
T  23255607 ttgtccgcttacctcctattca 23255586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 18981651 - 18981735
Alignment:
Q  251 tcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtct 337  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||| |||||    
T  18981651 tcaaagggtcatgcatagtaatgtcatgtctc-taggtccatgaatgttgtgtttacgatgattgg-tttgccatccaaaatggtct 18981735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 48657037 - 48657147
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtgg-cgcatgttgcccgcttg 359  Q
    |||||||||||||| ||||||| |||||| |||||||||||||| |||| ||||| ||||||| ||||||||| ||||||||  || ||||||| |||||    
T  48657037 atgcatagcaatgttatgtctcataggtctatgaatgttgtgtttacgatgattgattttgccgtccaaaaagatctagtggtggcttgttgcctgcttg 48657136  T
Q  360 ccttctattca 370  Q
     || |||||||    
T  48657137 gctcctattca 48657147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 38535688 - 38535772
Alignment:
Q  258 gtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc 343  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||| |||||| ||||||||| || ||||||||    
T  38535688 gtcatgcatagcaatgtcatgtcttataggtccatggatgttgtgtttacgaggattagttttg-catccaaaacggcctagtggc 38535772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 257 - 368
Target Start/End: Original strand, 50464414 - 50464528
Alignment:
Q  257 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcc 353  Q
    ||||||||||| ||||||||||||||| |  |  |||||||||||||| |||||||||  |||||||||||||||||  |||| ||||||   ||||| |    
T  50464414 ggtcatgcataacaatgtcatgtctcccaaatatatgaatgttgtgtttacgaggatttattttgccatccaaaaagacctagcggcgcagcttgttgtc 50464513  T
Q  354 cgcttgccttctatt 368  Q
    |||||||||||||||    
T  50464514 cgcttgccttctatt 50464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 55933597 - 55933694
Alignment:
Q  276 atgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattca 370  Q
    ||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||||| |||||| | ||||   ||||| |||||||||| |||||||    
T  55933597 atgtctcctaggtccgtgaatgttgtgtttacgatgattgattttgccatccaaaaaagtctagcgacgcagtttgttgtccgcttgcctcctattca 55933694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 382
Target Start/End: Complemental strand, 23605059 - 23604951
Alignment:
Q  277 tgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagt 373  Q
    |||||||||| ||||||||| |||||||   |||||||| ||||| ||||||||||||||||| ||||||   ||||| ||| ||| |||||||||| ||    
T  23605059 tgtctcctagatccatgaatattgtgttgttgaggattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgt 23604960  T
Q  374 gtaaataat 382  Q
    |||||||||    
T  23604959 gtaaataat 23604951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 56462217 - 56462291
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgcca 324  Q
    |||||| | ||||||||  ||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||    
T  56462217 ttcaaaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgtttacgagaattggttttgcca 56462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 45661687 - 45661604
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||| |||||| || | |||||||||  ||| ||||||||||||| ||||||| ||||||||||||||| | ||||||||||    
T  45661687 ttcaaagggtcatacacaacaatgtcataactcgtaggtccatgaatattgtgtttacgaggattggttttactatccaaaaag 45661604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 23242889 - 23242808
Alignment:
Q  257 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    ||||||||||| ||||||||| |||| ||||||||| ||| ||||||| |||| ||||| |||||  |||||||||| ||||    
T  23242889 ggtcatgcataacaatgtcatttctcttaggtccataaatattgtgtttacgatgattgattttgttatccaaaaagctcta 23242808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 250 - 370
Target Start/End: Original strand, 42455718 - 42455841
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||| | ||||| ||| ||||||||||| | ||||||||||||||||||| || ||||| ||||  |||| ||| ||||||||| |||  || ||       
T  42455718 ttcaaatgatcatggataacaatgtcatgttttctaggtccatgaatgttgtttttacgagaattgactttgtcattcaaaaaggtttagcagcacaact 42455817  T
Q  347 tgttgcccgcttgccttctattca 370  Q
    |||||| |||||||||||||||||    
T  42455818 tgttgctcgcttgccttctattca 42455841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 8738201 - 8738105
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    |||||| | |||||||||  ||||||||||||| ||||| ||||||||||||||  || | ||||| ||||| |||||||||| || ||| ||||||    
T  8738201 ttcaaaggctcatgcataaaaatgtcatgtctcttaggttcatgaatgttgtgtatacaaagattgattttgtcatccaaaaaagtttagcggcgca 8738105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 47585153 - 47585263
Alignment:
Q  284 taggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaata 380  Q
    |||||| || ||| ||||||| |||| ||||||||||| |||| |||||||| ||| |||| |   ||||| | | ||||||||||||||| ||||||||    
T  47585153 taggtctataaattttgtgtttacgaagattggttttgtcatctaaaaaggtttagcggcgtagtttgttgtctgtttgccttctattcaaatgtaaata 47585252  T
Q  381 attgtttatat 391  Q
    || ||||||||    
T  47585253 atagtttatat 47585263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 34213615 - 34213534
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||| |||||||| || ||||||  | |||||||| ||||||||||||||||| || ||||| ||||||||||||| ||||    
T  34213615 ttcaaagggtcatgcctaacaatgtg-tctctcctagttccatgaatgttgtgtttacaaggatcggttttgccatccgaaaa 34213534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 7536694 - 7536771
Alignment:
Q  262 tgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    ||||||||||| | ||||||| ||| |||||||||||| |||| || | |||||||||||  |||||||||| |||||    
T  7536694 tgcatagcaattttatgtctcgtagatccatgaatgttatgtttacaatgattggttttgtgatccaaaaagatctag 7536771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 23233232 - 23233309
Alignment:
Q  257 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||||||||  |||||||||| |||||| | |||||||||||| || | |||||||| ||| || |||||||||||    
T  23233232 ggtcatgcataataatgtcatgtttcctagattcatgaatgttgtctttatgaggattgatttggctatccaaaaagg 23233309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 32312822 - 32312902
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt-----cacgaggattggttttgccat 325  Q
    |||||||||||||||||| ||||||  ||||| |||| || ||||||||||||||     || ||||||||||||||||||    
T  32312822 ttcaaaaggtcatgcataacaatgtagtgtcttctagatctatgaatgttgtgttgttttcaggaggattggttttgccat 32312902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 40005289 - 40005345
Alignment:
Q  270 aatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatc 326  Q
    ||||||||||||||||| |  || ||||||||||| || ||||||||||||||||||    
T  40005289 aatgtcatgtctcctagatatatcaatgttgtgtttacaaggattggttttgccatc 40005345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 54190962 - 54191050
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    |||||| || |||||||| |||||||||| ||| || |||||| ||| |||| || || | |||||||||||| |||||||||| ||||    
T  54190962 ttcaaagggccatgcataacaatgtcatgactcttaagtccataaatattgtatttacaaagattggttttgctatccaaaaagttcta 54191050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 2852394 - 2852347
Alignment:
Q  287 gtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    ||||||||||||||||||||| ||||||||||||  ||| ||||||||    
T  2852394 gtccatgaatgttgtgttcacaaggattggttttttcattcaaaaagg 2852347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 28739890 - 28739847
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 304  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||    
T  28739890 atgcataacaatgttatgtctcctaggtccataaatgttgtgtt 28739847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 6865931 - 6865984
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 304  Q
    |||||| ||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  6865931 ttcaaagggtaatgcatagcaatgtcatgtctcctagat-catgaatgttctgtt 6865984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 9601184 - 9601122
Alignment:
Q  271 atgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||||| ||||||||| ||| | || |||||| |||||||||| ||||| |||||||||||    
T  9601184 atgtcatgactcctaggttcataagtggtgtgtttacgaggattgattttgtcatccaaaaag 9601122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 49354175 - 49354265
Alignment:
Q  248 aattcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatg----aatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||| ||| |||||| ||||||||||| ||||||||||  ||||||    ||||||||||| |||| ||||| ||||| | ||||||||||    
T  49354175 aatttaaatggtcattcatagcaatgtaatgtctcctaaatccatgaattaatgttgtgtttacgatgattgattttgtcgtccaaaaagg 49354265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 2566206 - 2566350
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||       
T  2566206 ttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatcaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaact 2566305  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||| |||||||| | ||||| ||||||||||  |||||||    
T  2566306 tgttgcccacttgccttattttcaattgtaaataatgatttatat 2566350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 32269908 - 32270051
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtgg--cgcat 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |  ||| ||   || |    
T  32269908 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaaagcatagcgggcagctt 32270007  T
Q  348 gttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||| |||||||||||||||||||||||||||||||  |||||||    
T  32270008 gttacccgcttgccttctattcaagtgtaaataatattttatat 32270051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 15292136 - 15292280
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||| | |||||||| |||||||||||||||| |  | | ||||||       
T  15292136 ttcaaaaggtcatgcatagcaatgtcacatctcctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaaagcttggcggcgcagtt 15292235  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||    
T  15292236 tgttgcccacttgccttctattcaagtataaataatggtttatat 15292280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 42921693 - 42921550
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||| ||||||||||||| ||||||||||||||||| |||||| ||| ||||||| || ||||||||||||||||||||||||| ||||| ||||||       
T  42921693 ttcagaaggtcatgcataacaatgtcatgtctcctaagtccat-aatattgtgtttacaaggattggttttgccatccaaaaagatctagcggcgcagct 42921595  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||| ||| |||||||||||||||||||||||||||  |||||||    
T  42921594 tgtttcccacttgccttctattcaagtgtaaataatgatttatat 42921550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 247 - 347
Target Start/End: Complemental strand, 23023594 - 23023494
Alignment:
Q  247 aaattcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||| ||||| |||||||||||| |||| ||||||    
T  23023594 aaattcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagattgattttgtcatccaaaaaggcctaggggcgca 23023495  T
Q  347 t 347  Q
    |    
T  23023494 t 23023494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 255 - 389
Target Start/End: Complemental strand, 14423676 - 14423545
Alignment:
Q  255 aaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgcatgttgccc 354  Q
    ||||| || |||| |||||||||||||| ||||||||| |||  ||||||||| ||||||||||||||||||||||||| ||||| || ||| |||| ||    
T  14423676 aaggtaattcataacaatgtcatgtctcttaggtccataaat--tgtgttcacaaggattggttttgccatccaaaaagatctagcggtgca-gttgtcc 14423580  T
Q  355 gcttgccttctattcaagtgtaaataattgtttat 389  Q
    ||||||||| |||||||||||||||||| ||||||    
T  14423579 gcttgccttttattcaagtgtaaataatggtttat 14423545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 26212694 - 26212838
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgc---a 346  Q
    ||||||| |||||| || ||||| | |||||||||| ||||||||||||||| |||| |||||||||||||||| ||| ||||| ||||||| |||   |    
T  26212694 ttcaaaatgtcatgtatggcaatattatgtctcctaagtccatgaatgttgttttcatgaggattggttttgccttccgaaaagatctagtgacgcaata 26212793  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    | |||||||||||| |||||||||||||||||||||  |||||||    
T  26212794 tattgcccgcttgctttctattcaagtgtaaataatgatttatat 26212838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 22188766 - 22188909
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc---gca 346  Q
    |||||||||||||||||| |||| ||||||||||||| | ||||||||||||||| ||||| |||||||||| |||||||||| ||||||| ||   |||    
T  22188766 ttcaaaaggtcatgcataacaatatcatgtctcctagattcatgaatgttgtgtttacgagaattggttttgtcatccaaaaaagtctagtagcacagca 22188865  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||| | | ||| ||||||||||| | |||||||| ||||||||    
T  22188866 tgttg-ctgtttgtcttctattcaaatataaataatggtttatat 22188909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 262 - 382
Target Start/End: Complemental strand, 35310432 - 35310309
Alignment:
Q  262 tgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgctt 358  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||  | ||||   ||||||||||||    
T  35310432 tgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaagaggtttaacgacgcagcttgttgcccgctt 35310333  T
Q  359 gccttctattcaagtgtaaataat 382  Q
    |||| ||||||| |||||| ||||    
T  35310332 gcctcctattcatgtgtaagtaat 35310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 430596 - 430510
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  430596 caaagggttatgcatagtaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaaggtcta 430510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 13167023 - 13167156
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||| ||| |||||||||||||  ||||||||||||||||||||||||| ||| |||| ||||| || ||  |||||||||| ||||| ||||||   ||    
T  13167023 caaagggttatgcatagcaatggtatgtctcctaggtccatgaatgttgggtttacgatgattgattctgttatccaaaaagatctagcggcgcagcttg 13167122  T
Q  349 ttgcccgcttgccttctattcaagtgtaaataat 382  Q
    |||||| ||||||| ||||||| |||||| ||||    
T  13167123 ttgcccacttgcctcctattcatgtgtaattaat 13167156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 15810038 - 15809972
Alignment:
Q  257 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgcc 323  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  15810038 ggtcatgtatagcaatgtcatgtctcctaggcccatgaatgtcgtgttcacgaggattgattttgcc 15809972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 25663145 - 25663231
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    |||| ||| ||||||| |||||| ||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||||    
T  25663145 caaagggttatgcatatcaatgttatgtcccctaggtccatgaatgttgagtttacgaggattggctttgtcatccaaaaaggtcta 25663231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 27336676 - 27336602
Alignment:
Q  265 atagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    |||||||||| |||||||||| ||||||||||||||| || || ||||||| |||||||||| ||||||||||||    
T  27336676 atagcaatgttatgtctcctaagtccatgaatgttgtttttacaaggattgattttgccatcaaaaaaggtctag 27336602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 15833058 - 15832962
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    |||||| ||||||| ||| |||||||| ||||||||| | ||||||||| ||||||||||||||| |||||||| |||  |||| |||| |||||||    
T  15833058 ttcaaatggtcatgtataacaatgtcacgtctcctagattcatgaatgtcgtgttcacgaggattagttttgccttccttaaagatctaatggcgca 15832962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 33692176 - 33692298
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    ||||||| |||||| ||||||| ||||| |||||||||| |||| ||||   |||||||| |||||||||||| ||||| ||||||   ||||||| |||    
T  33692176 atgcataacaatgttatgtctcataggttcatgaatgttctgtttacgat--ttggtttttccatccaaaaagatctagcggcgcagcttgttgcctgct 33692273  T
Q  358 tgccttctattcaagtgtaaataat 382  Q
    ||||| ||||||| |||||| ||||    
T  33692274 tgcctcctattcatgtgtaagtaat 33692298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 24113572 - 24113448
Alignment:
Q  249 attcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca-- 346  Q
    ||||||| | ||||||||| ||||||||||||| ||||||||||||||||||| || || || ||||  |||  ||| ||||||||| ||||||| ||      
T  24113572 attcaaatgatcatgcataacaatgtcatgtcttctaggtccatgaatgttgtttttacaagaattgactttatcattcaaaaaggtttagtggcacaac 24113473  T
Q  347 -tgttgcccgcttgccttctattca 370  Q
     |||||| || ||||||||||||||    
T  24113472 ttgttgctcgtttgccttctattca 24113448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 38875634 - 38875552
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggt 335  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||| |||| ||||||  |||| ||||||||||||    
T  38875634 ttcaaaaggtcatgcataacaatgtcttgtctcctaggtcaatg-atgttgtgtttacgatgattgg--ttgcgatccaaaaaggt 38875552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 15506729 - 15506810
Alignment:
Q  253 aaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    ||||||| ||| ||||||||||||||||||||||  | | |||||||||||| |||||||||| |||| ||||| |||||||    
T  15506729 aaaaggttatgtatagcaatgtcatgtctcctagacctacgaatgttgtgtttacgaggattgattttaccatcaaaaaagg 15506810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 37873749 - 37873838
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    |||||| ||||||||| | |||||||||| || ||||||| |||||||||||||| | |||||||| |||||| ||| ||||||| ||||    
T  37873749 ttcaaagggtcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgtttaagaggattgattttgctatcaaaaaaggcctag 37873838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 2917527 - 2917601
Alignment:
Q  306 acgaggattggtttt-gccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgta 376  Q
    ||||||||||||||| ||||||||||||||||||| ||||||   ||||||| |||||||| ||||||| |||||    
T  2917527 acgaggattggtttttgccatccaaaaaggtctagcggcgcagtttgttgcctgcttgcctcctattcatgtgta 2917601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 11005825 - 11005757
Alignment:
Q  299 tgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttc 364  Q
    |||||| || ||||||||||||||||||||||||||  ||| ||||||   ||||||||||||||||||    
T  11005825 tgtgtttactaggattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttc 11005757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 34476005 - 34475953
Alignment:
Q  282 cctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    ||||||||||||||||||||||| |||| ||||| |||| || ||||||||||    
T  34476005 cctaggtccatgaatgttgtgtttacgaagattgttttttccgtccaaaaagg 34475953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 346
Target Start/End: Complemental strand, 8100539 - 8100454
Alignment:
Q  259 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca 346  Q
    ||||||||| ||||||||||||| |||||||  | |||||||| ||  ||| ||||| |||||||||||||||| | |||||||||||    
T  8100539 tcatgcatatcaatgtcatgtcttctaggtcg-taaatgttgttttg-cgatgattgattttgccatccaaaaaagcctagtggcgca 8100454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 16017169 - 16017131
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggt 288  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  16017169 ttcaaaaggtcatgcatagcaatgttgtgtctcctaggt 16017131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 12033383 - 12033346
Alignment:
Q  294 aatgttgtgttcacgaggattggttttgccatccaaaa 331  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  12033383 aatgttgtgtttacgatgattggttttgccatccaaaa 12033346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 295 - 430
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| ||||||||| |||||||||||||||||||  | ||||||||       
T  295 ttcaaaaagtcatacatagcaatgtcatgtctcctagatcgatgaacgttgtgtttacgaggattagttttgccatccaaaaaggctttgtggcgcatct 394  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    ||||||| |||| |||||||||||||||||||||||    
T  395 tgttgccggctttccttctattcaagtgtaaataat 430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 3137365 - 3137442
Alignment:
Q  257 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3137365 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 3137442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 17249431 - 17249539
Alignment:
Q  265 atagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgcc 361  Q
    |||||||||| |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||    
T  17249431 atagcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcc 17249530  T
Q  362 ttctattca 370  Q
    | |||||||    
T  17249531 tcctattca 17249539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 32115714 - 32115625
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||| ||||||||||||    
T  32115714 ttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgctatctaaaaaggtctag 32115625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 34168897 - 34168773
Alignment:
Q  269 caatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttct 365  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||   ||| |||||||||||||||    
T  34168897 caatgtcatgactcctagatccatgaatgttgtgtt-acgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgccttct 34168799  T
Q  366 attcaagtgtaaataattgtttatat 391  Q
    ||||| |||||| ||||  |||||||    
T  34168798 attcatgtgtaattaatcatttatat 34168773  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 959577 - 959493
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||    
T  959577 ttcaaaaggtcatgcatagcaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattgattttgtcatctaaaaagg 959493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 33220824 - 33220957
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||| ||| ||||||||||||||  ||||| |||||||||||||||||| ||| ||||  |||||||||||||||| ||||||||||| ||||||   ||    
T  33220824 caaagggttatgcatagcaatgttgtgtcttctaggtccatgaatgttgcgtttacgataattggttttgccatcctaaaaggtctagcggcgcagcttg 33220923  T
Q  349 ttgcccgcttgccttctattcaagtgtaaataat 382  Q
    ||| |||||||||| ||||||| |||||| ||||    
T  33220924 ttggccgcttgcctcctattcatgtgtaagtaat 33220957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 286 - 382
Target Start/End: Complemental strand, 7749441 - 7749342
Alignment:
Q  286 ggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |||   |||||||||||||||| ||||||| |||||| ||||    
T  7749441 ggtccatgaatgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaactaat 7749342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 28625926 - 28625786
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||||||||||||||| || |||||| |||| |||||| |||||||||||||| |||  ||||| ||||||||| ||||||| ||||| ||||||       
T  28625926 ttcaaaaggtcatgcataaca-tgtcatatctcataggtctatgaatgttgtgtttacggagattgattttgccattcaaaaagatctagcggcgcagct 28625828  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgttta 388  Q
    | || |||| |||||||||||| ||||||||||||| |||||    
T  28625827 tattacccgtttgccttctatttaagtgtaaataatagttta 28625786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 4206707 - 4206788
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaa 331  Q
    |||||||||||||||||  |||||||||||| |||||||| |||||| | ||||| ||||||||||||||||||||||||||    
T  4206707 ttcaaaaggtcatgcatgacaatgtcatgtcacctaggtcaatgaatatagtgtttacgaggattggttttgccatccaaaa 4206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 34304481 - 34304368
Alignment:
Q  261 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgct 357  Q
    |||||||||||| ||||||||| |||||| ||||||||||| || |||||||||| |||||| |||||||||||| ||| ||| ||   |||||||||      
T  34304481 atgcatagcaatatcatgtctcataggtctatgaatgttgtatttacgaggattgattttgcaatccaaaaaggtatagcggcacaaattgttgcccgtc 34304382  T
Q  358 tgccttctattcaa 371  Q
    ||||| ||||||||    
T  34304381 tgcctcctattcaa 34304368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 4166036 - 4166114
Alignment:
Q  253 aaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaa 331  Q
    ||||||||||||||  |||||||||||| |||||||| || ||| | ||||| ||||||||||||||||||||||||||    
T  4166036 aaaaggtcatgcatgacaatgtcatgtcacctaggtcaataaatatagtgtttacgaggattggttttgccatccaaaa 4166114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 34554391 - 34554480
Alignment:
Q  253 aaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggc 343  Q
    ||||||||||| |||||||| ||||||||| || ||| |||||| ||||||| |||||||||| ||||| |||||||||||| ||||||||    
T  34554391 aaaaggtcatgtatagcaatatcatgtctcgtaagtc-atgaattttgtgtttacgaggattgattttgtcatccaaaaaggcctagtggc 34554480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 29338190 - 29338271
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaa 331  Q
    |||||| ||||||||| | |||||||||| ||||||||||||||||||||||||| || ||||||| |||| | ||||||||    
T  29338190 ttcaaagggtcatgcacatcaatgtcatgactcctaggtccatgaatgttgtgtttacaaggattgatttttctatccaaaa 29338271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 357840 - 357909
Alignment:
Q  263 gcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaa 332  Q
    |||||||||||| || |||||||||||||||||||||||||| |||| ||||  |||||||||| |||||    
T  357840 gcatagcaatgttatctctcctaggtccatgaatgttgtgtttacgaagattaattttgccatctaaaaa 357909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 252 - 383
Target Start/End: Complemental strand, 28543391 - 28543257
Alignment:
Q  252 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tg 348  Q
    |||||||||||| | | |||||| |||| |||||||||||| ||| || |||| | |||||||||||||||||||  ||||| ||||| ||||||         
T  28543391 caaaaggtcatgtaaaacaatgttatgtttcctaggtccataaatattatgtttaagaggattggttttgccatctgaaaagatctagcggcgcaactaa 28543292  T
Q  349 ttgcccgcttgccttctattcaagtgtaaataatt 383  Q
    ||| |||||||||||||||||| | |||| |||||    
T  28543291 ttgtccgcttgccttctattcatgcgtaagtaatt 28543257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 45832 - 45876
Alignment:
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  45832 tgttgcccgcttgcctcctattcaagtgtaaataatggtttatat 45876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 28009098 - 28009182
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 334  Q
    |||||| |||||| || | |||||||||| |||||||||||||||| ||||| || || || |||| |||||| |||||||||||    
T  28009098 ttcaaagggtcatacacaacaatgtcatgactcctaggtccatgaacgttgtctttaccagaattgattttgcaatccaaaaagg 28009182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 34562369 - 34562432
Alignment:
Q  331 aaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    |||||||| |||||||   ||||| ||| |||||||||||||||||||||||||| ||||||||    
T  34562369 aaggtctaatggcgcagtttgttgtccgtttgccttctattcaagtgtaaataatagtttatat 34562432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 26225716 - 26225773
Alignment:
Q  276 atgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaag 333  Q
    |||||| ||||||| ||| || ||||||| | |||||||||||||| |||||||||||    
T  26225716 atgtcttctaggtcgatggattttgtgtttatgaggattggttttgtcatccaaaaag 26225773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 33246 - 33102
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| || ||||| |||||||||| ||||| ||||||||||||  | | || |||       
T  33246 ttcaaaaggtcatgcatagcaattttatgtctcctaggtccatgaacgtcgtgtttacgaggattgattttgtcatccaaaaaggcttggcggtgcagct 33147  T
Q  347 tgttgcccgcttgccttctattcaagtgtaaataattgtttatat 391  Q
    ||||||| |||||||||||||||||||||||||||| || |||||    
T  33146 tgttgcctgcttgccttctattcaagtgtaaataatggtgtatat 33102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 5276 - 5176
Alignment:
Q  294 aatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataattgtttata 390  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| ||||||   |||||||||||||| ||||||||||||||||||||| |||||||    
T  5276 aatgttgtgttcacgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaaataatggtttata 5177  T
Q  391 t 391  Q
    |    
T  5176 t 5176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 6837 - 6750
Alignment:
Q  297 gttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca---tgttgcccgcttgccttctattcaagtgtaaataa 381  Q
    |||||||| ||||| |||||||||||||||||||||||||||| | ||||   |||||||||||||||||||||||||||||||||||    
T  6837 gttgtgtttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaaataa 6750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 7598 - 7511
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 338  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||| |||| ||||| |||||||||| ||||||||||| ||||    
T  7598 ttcaaaaggtcatgcatat-aatgtcatgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaagatcta 7511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 6330 - 6279
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6330 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 6279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 16807 - 16900
Alignment:
Q  292 tgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta---gtggcgcatgttgcccgcttgccttctattcaagtgtaaataat 382  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||||   |||  |||||||||||  |||||||| |||||| ||||||||||    
T  16807 tgaatgttgtattcacgagaattgattttgccatccaaaaaggtctagcggtgcagcatgttgcccttttgccttccattcaaatgtaaataat 16900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 366
Target Start/End: Complemental strand, 49411 - 49292
Alignment:
Q  250 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagtggcgca--- 346  Q
    |||||| | ||||||||| |||||||||||||| || |||||||||||| || || ||||| |||| |||| ||||| |||| ||||||| ||||||       
T  49411 ttcaaaggatcatgcataacaatgtcatgtctcttatgtccatgaatgtagtatttacgagaattgatttttccatctaaaacggtctagcggcgcaact 49312  T
Q  347 tgttgcccgcttgccttcta 366  Q
    ||||||  ||||||||||||    
T  49311 tgttgctagcttgccttcta 49292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 17389 - 17468
Alignment:
Q  249 attcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaa 330  Q
    ||||||| |||||||||||  |||||  |||||| ||||||||||||||||||||| | || ||||| |||||| |||||||    
T  17389 attcaaatggtcatgcataataatgt--tgtctcttaggtccatgaatgttgtgtttaagatgattgcttttgctatccaaa 17468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 4378 - 4447
Alignment:
Q  270 aatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctag 339  Q
    ||||||||||||| || |||||| ||||||||||| ||||  |||||||||| |||| | |||| |||||    
T  4378 aatgtcatgtctcataagtccataaatgttgtgtttacgaatattggttttgtcatcaagaaagatctag 4447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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