View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752-Insertion-7 (Length: 589)

Name: NF0752-Insertion-7
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752-Insertion-7
NF0752-Insertion-7
[»] chr7 (10 HSPs)
chr7 (8-524)||(32679027-32679541)
chr7 (8-445)||(32695168-32695607)
chr7 (8-459)||(32686159-32686585)
chr7 (474-533)||(30655598-30655657)
chr7 (474-533)||(42598059-42598118)
chr7 (474-533)||(1039063-1039122)
chr7 (477-533)||(31424775-31424831)
chr7 (477-533)||(46691848-46691904)
chr7 (490-533)||(33320774-33320817)
chr7 (482-533)||(36615811-36615862)
[»] chr1 (8 HSPs)
chr1 (477-533)||(38548750-38548806)
chr1 (477-533)||(19472873-19472929)
chr1 (477-533)||(12173027-12173083)
chr1 (485-533)||(46757379-46757427)
chr1 (477-528)||(28447797-28447848)
chr1 (482-532)||(31833965-31834015)
chr1 (482-532)||(42442015-42442065)
chr1 (477-533)||(26990674-26990730)
[»] chr8 (7 HSPs)
chr8 (477-529)||(22839331-22839383)
chr8 (482-533)||(25829272-25829323)
chr8 (482-533)||(38086422-38086473)
chr8 (482-533)||(40930838-40930889)
chr8 (474-533)||(13959219-13959278)
chr8 (487-529)||(44362942-44362984)
chr8 (477-533)||(5200485-5200541)
[»] chr3 (7 HSPs)
chr3 (482-533)||(47820975-47821026)
chr3 (482-533)||(28934744-28934795)
chr3 (477-533)||(43073049-43073105)
chr3 (482-533)||(10454357-10454408)
chr3 (482-533)||(44656233-44656284)
chr3 (477-533)||(31525436-31525492)
chr3 (477-533)||(52076138-52076194)
[»] chr6 (3 HSPs)
chr6 (477-533)||(6575798-6575854)
chr6 (487-520)||(12754432-12754465)
chr6 (477-520)||(33112718-33112761)
[»] chr4 (6 HSPs)
chr4 (477-533)||(42390775-42390831)
chr4 (477-533)||(15186984-15187040)
chr4 (482-533)||(16572143-16572194)
chr4 (477-532)||(47571574-47571629)
chr4 (477-533)||(32183353-32183410)
chr4 (477-533)||(25641272-25641328)
[»] chr5 (4 HSPs)
chr5 (482-533)||(10431133-10431184)
chr5 (482-533)||(23172981-23173032)
chr5 (482-533)||(22887284-22887335)
chr5 (481-533)||(9931803-9931855)
[»] chr2 (5 HSPs)
chr2 (482-533)||(41419693-41419744)
chr2 (485-533)||(41378214-41378262)
chr2 (477-524)||(22649068-22649115)
chr2 (475-532)||(38908743-38908800)
chr2 (487-532)||(43356757-43356802)


Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 524
Target Start/End: Complemental strand, 32679541 - 32679027
Alignment:
Q  8 aatggctcccccaaacagaatgaaacttctctgaaattgcactcataaggaactttttgttcttcatgactgagagtataattgaacgagctttgatggc 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||     
T  32679541 aatggctcccccaaacagaatgaaacttctctgaaattgaactcataaggaactttttgttc---atgactgagagtataattgaacgagctttgatggt 32679445  T
Q  108 atttgttttggactttaaagacatagtttttgactttgtcattgaggttaaatcggcaatgatttgctttaacaaatttgctgttttgttcttcatgttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32679444 atttgttttggactttaaagacatagtttttgactttgtcattgaggttaaatcggcaatgatttgctttaacaaatttgctgttttgttcttcatgttg 32679345  T
Q  208 ctcattgtagtaactattgatgactctagagactttgcaaaatagcttgtgaaagtaaaaaagtctagtgaactaaatcaaatcaaagttgaatatannn 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  32679344 ctcattgtagtaactattgatgactctagagactttgcaaaatagcttgtgaaagtaaaaaagtctagtgaactaaatcaaatcaaagttgaatatattt 32679245  T
Q  308 nnnnnggtaatgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttggcacgaacgagtacaag 407  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32679244 tttttggtaatgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttggcacgaacgagtacaag 32679145  T
Q  408 ggttggacaagggtttatataggagatactataaggtagcaatcataataattata-nnnnnnnnnnaaacggctaaattttattaaccaacaaacccgt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||| |||||    
T  32679144 ggttggacaagggtttatataggagatactataaggtagcaatcataataattatatatatttttttaaacggctaaattttattaaccaacaagcccgt 32679045  T
Q  507 gcaagacgcactaataag 524  Q
    ||||||||||||||||||    
T  32679044 gcaagacgcactaataag 32679027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 32695607 - 32695168
Alignment:
Q  8 aatggctcccccaaacagaatgaaacttctctgaaattgcactcataaggaactttttgttcttcatgactgagagtataattgaacgagctttgatggc 107  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||  |||||||||||| |||    
T  32695607 aatggctcccccaaacagaatgaaacttatctgaaattgaactcataagaaactttttgttcttcatgagtgagaatataatcaaacgagctttgacggc 32695508  T
Q  108 atttgttttggactttaaagacatagtttttgactttgtcattgaggttaaatcggcaatgatttgctttaacaaatttgctgttttgttcttcatgttg 207  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||     
T  32695507 atttgttttggactttatagccatagtttttgactttgtcattgcggttaaaccggcaatgatttgcttcaacaattttgctgttttgctcttcatgttt 32695408  T
Q  208 ctcattgtagtaactattgatgactctagagactttgcaaaatagcttgtgaaagtaaaaaagtctagtgaactaaatcaaatcaaagttgaatatannn 307  Q
     ||||||||||||  |||||||||||||||||||| ||||||||| | |||||||||||||||| || ||||||||||||||||||| || || | |       
T  32695407 gtcattgtagtaataattgatgactctagagacttagcaaaataggtagtgaaagtaaaaaagtttaatgaactaaatcaaatcaaaatttaa-aaaaca 32695309  T
Q  308 nnnnnggtaatgtttaggtttgagattgagagagaggtgatagtttgaagagaggatt-gttattgtacaagctttgtactttggcacgaacgagtacaa 406  Q
         |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32695308 attttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggattggttattgtacaagctttgtactttggcacgaacgagtacaa 32695209  T
Q  407 gggttggacaagggtttatatag--gagatactataaggta 445  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  32695208 gggttggacaagggtttatataggagagatactataaggta 32695168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 32686585 - 32686159
Alignment:
Q  8 aatggctcccccaaacagaatgaaacttctctgaaattgcactcataaggaactttttgttcttcatgactgagagtataattgaacgagctttgatggc 107  Q
    |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||    
T  32686585 aatgactcccccaaacagaatgaaacttatctgaaattgaactcataaggaactttttattcttcatgagtgagaatataattaaacgagctttgatggc 32686486  T
Q  108 atttgttttggactttaaagacatagtttttgactttgtcattgaggttaaatcggcaatgatttgctttaacaaatttgctgttttgttcttcatgttg 207  Q
    |||||||||||||||||| | ||||||||| ||||||||         |||| | || || ||||||||   ||| ||||||||||||||| ||||||||    
T  32686485 atttgttttggactttaatgccatagttttggactttgt---------taaaccagctataatttgcttctgcaattttgctgttttgttcatcatgttg 32686395  T
Q  208 ctcattgtagtaactattgatgactctagagactttgcaaaatagcttgtgaaagtaaaaaagtctagtgaactaaatcaaatcaaagttgaatatannn 307  Q
    |||||||||||||  ||||||||||         |||||||||||||| ||||||||||| |||  | |||||||||||||||     ||| |||         
T  32686394 ctcattgtagtaataattgatgact---------ttgcaaaatagcttatgaaagtaaaatagttgaatgaactaaatcaaat-----ttggata--aca 32686311  T
Q  308 nnnnnggtaatgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttggcacgaacgagtacaag 407  Q
         || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  32686310 attttgggaatgtttaggtttgagattgatagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttggcacgaaagaggacaag 32686211  T
Q  408 ggttggacaagggtttatataggagatactataaggtagcaatcataataat 459  Q
    |  ||| |||||||||||||||||||||||||||||||  ||| ||||||||    
T  32686210 gtgtggccaagggtttatataggagatactataaggtaagaataataataat 32686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 474 - 533
Target Start/End: Original strand, 30655598 - 30655657
Alignment:
Q  474 aaacggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  30655598 aaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtgg 30655657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 42598118 - 42598059
Alignment:
Q  474 aaacggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||||||| | ||||||    
T  42598118 aaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtgg 42598059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 533
Target Start/End: Original strand, 1039063 - 1039122
Alignment:
Q  474 aaacggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    ||||||| |||| ||||||||| |||| ||||||||||| ||||||||||| ||||||||    
T  1039063 aaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgg 1039122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 31424775 - 31424831
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| ||||||||||||||||||||||||||  |||||||||| | ||||||    
T  31424775 cggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtgg 31424831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 46691848 - 46691904
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||| ||| ||||||||    
T  46691848 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtgg 46691904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 33320817 - 33320774
Alignment:
Q  490 ttaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||    
T  33320817 ttaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 33320774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 36615811 - 36615862
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||| ||||||| ||||||||||| ||||||||||| ||||||||    
T  36615811 aaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtgg 36615862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 38548806 - 38548750
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  38548806 cggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgg 38548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 19472929 - 19472873
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  19472929 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtgg 19472873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 12173083 - 12173027
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||||||| | ||||||    
T  12173083 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtgg 12173027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 46757427 - 46757379
Alignment:
Q  485 ttttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||||||||||||||| ||||||||||| ||||||||||| || |||||    
T  46757427 ttttattaaccaacaagcccgtgcaagatgcactaataagctcaggtgg 46757379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 28447848 - 28447797
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcg 528  Q
    |||| |||| |||||||||||||| ||||||||||| |||||||||| ||||    
T  28447848 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataaattcg 28447797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 532
Target Start/End: Complemental strand, 31834015 - 31833965
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtg 532  Q
    |||| ||||||||||||||| |||||||||| ||||||| ||| |||||||    
T  31834015 aaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtg 31833965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 532
Target Start/End: Original strand, 42442015 - 42442065
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtg 532  Q
    |||| ||||||||||||||  |||||||||| ||||||||||| |||||||    
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtg 42442065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 26990730 - 26990674
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| ||||||||||| || ||||||||||| ||||||||||| | ||||||    
T  26990730 cggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtgg 26990674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 477 - 529
Target Start/End: Complemental strand, 22839383 - 22839331
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgg 529  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  22839383 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcgg 22839331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 25829272 - 25829323
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  25829272 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 25829323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 38086422 - 38086473
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| ||||||||||| || ||||||||||||||||||||||| ||||||||    
T  38086422 aaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtgg 38086473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 40930838 - 40930889
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  40930838 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 40930889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 533
Target Start/End: Original strand, 13959219 - 13959278
Alignment:
Q  474 aaacggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    ||||||| |||| |||||| ||||||| ||||||||||| ||| ||||||| ||||||||    
T  13959219 aaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtgg 13959278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 529
Target Start/End: Original strand, 44362942 - 44362984
Alignment:
Q  487 ttattaaccaacaaacccgtgcaagacgcactaataagttcgg 529  Q
    |||||||||||||| || |||||||| ||||||||||||||||    
T  44362942 ttattaaccaacaatcctgtgcaagaagcactaataagttcgg 44362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 5200485 - 5200541
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| ||||||||||||||  ||||||||||  |||||||||||| ||||||    
T  5200485 cggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtgg 5200541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 533
Target Start/End: Complemental strand, 47821026 - 47820975
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  47821026 aaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtgg 47820975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 28934744 - 28934795
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  28934744 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 28934795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 43073049 - 43073105
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||||||| | ||||||    
T  43073049 cggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgg 43073105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 533
Target Start/End: Complemental strand, 10454408 - 10454357
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||||||  ||||||||||| ||||||||    
T  10454408 aaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgg 10454357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 44656233 - 44656284
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||||||| |||| |||||| ||||||||    
T  44656233 aaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtgg 44656284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 31525492 - 31525436
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| |||||||||||||| || |||||||| ||||||||||| | ||||||    
T  31525492 cggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtgg 31525436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 52076194 - 52076138
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| ||| |||||||||| ||||||| ||| ||||||||||| ||||||||    
T  52076194 cggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 52076138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 6575854 - 6575798
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| ||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  6575854 cggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtgg 6575798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 487 - 520
Target Start/End: Original strand, 12754432 - 12754465
Alignment:
Q  487 ttattaaccaacaaacccgtgcaagacgcactaa 520  Q
    ||||||||||||||||||||||||||||||||||    
T  12754432 ttattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 520
Target Start/End: Original strand, 33112718 - 33112761
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaa 520  Q
    |||| |||| |||||||||||||| |||||||||||||||||||    
T  33112718 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaa 33112761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 42390775 - 42390831
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||||||||||||||  ||||||| ||||||||||||| ||||||||| ||||||||    
T  42390775 cggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtgg 42390831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 15186984 - 15187040
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||||||| | ||||||    
T  15186984 cggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgg 15187040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 533
Target Start/End: Complemental strand, 16572194 - 16572143
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||| ||| ||||||||||| ||||||||    
T  16572194 aaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 16572143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 532
Target Start/End: Original strand, 47571574 - 47571629
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtg 532  Q
    |||| |||| ||||||||||||||||||||| |||  ||||||||||| |||||||    
T  47571574 cggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtg 47571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 32183410 - 32183353
Alignment:
Q  477 cggctaaattttattaaccaa-caaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| ||||||||||| ||| |||||||||| |||||||||||| ||||||||    
T  32183410 cggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtgg 32183353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 25641272 - 25641328
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||| ||| | ||||||    
T  25641272 cggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtgg 25641328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Complemental strand, 10431184 - 10431133
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| ||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  10431184 aaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtgg 10431133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 23172981 - 23173032
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  23172981 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 23173032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 533
Target Start/End: Complemental strand, 22887335 - 22887284
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||| ||| ||||||||||| ||||||||    
T  22887335 aaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 533
Target Start/End: Original strand, 9931803 - 9931855
Alignment:
Q  481 taaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    ||||| |||||||||||||| ||||||||||| ||||||| ||| | ||||||    
T  9931803 taaatattattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgg 9931855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Complemental strand, 41419744 - 41419693
Alignment:
Q  482 aaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||| |||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  41419744 aaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtgg 41419693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 41378214 - 41378262
Alignment:
Q  485 ttttattaaccaacaaacccgtgcaagacgcactaataagttcgggtgg 533  Q
    |||||||||||||||| |||||| |||| ||||||||||| ||||||||    
T  41378214 ttttattaaccaacaagcccgtgaaagatgcactaataagctcgggtgg 41378262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 524
Target Start/End: Original strand, 22649068 - 22649115
Alignment:
Q  477 cggctaaattttattaaccaacaaacccgtgcaagacgcactaataag 524  Q
    |||| ||||||||||||||||||| ||||||||||| | |||||||||    
T  22649068 cggcaaaattttattaaccaacaagcccgtgcaagaagtactaataag 22649115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 532
Target Start/End: Complemental strand, 38908800 - 38908743
Alignment:
Q  475 aacggctaaattttattaaccaacaaacccgtgcaagacgcactaataagttcgggtg 532  Q
    |||||| |||| ||||||||||| ||  |||||||||| ||||||||||| |||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtg 38908743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 43356802 - 43356757
Alignment:
Q  487 ttattaaccaacaaacccgtgcaagacgcactaataagttcgggtg 532  Q
    ||||||||||| ||  |||||||||| |||||||||||||||||||    
T  43356802 ttattaaccaataagtccgtgcaagatgcactaataagttcgggtg 43356757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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