View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752-Insertion-8 (Length: 520)
Name: NF0752-Insertion-8
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 7 - 494
Target Start/End: Original strand, 2747942 - 2748424
Alignment:
| Q |
7 |
aattttcccagggcttccatcgacgaatctattaacgacaacaatacttattaataaagaagagtttttcacgaacacaatttgttataataaaaagtat |
106 |
Q |
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| T |
2747942 |
aattttcccagggcttccatcgacgaatctattaacgacaatgatacttattaataaagaagagtttttcacgaacacaatttgttataataaaaagtat |
2748041 |
T |
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| Q |
107 |
atgattagattagatactcacatttagtcctccaaaaataatagtcaaaacacaagaagtcacatgaacaatagctaggacaaaaataaagatatgcagt |
206 |
Q |
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| T |
2748042 |
atgattagattagatactcacatttagtcctccaaaaataatagtcaaaacacaagaagtcacatgaacaatagctaggacaaaaataaagatatgcagt |
2748141 |
T |
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| Q |
207 |
ttatgcaatgcttccacagataatagaggtacttttccctgaaaataacataataatacaaaatatgattaaagtgaacaaaatgattaaatcatcaaat |
306 |
Q |
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| T |
2748142 |
ttatgcaatgcttccacagataatagaggtacttttccctgaaaataacataatcatacaaaatatgattaaagtgaataaaatgattaaatcatcaaat |
2748241 |
T |
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| Q |
307 |
taaaattgtctaaacaaagagaataagaatggtatatgactttgtcccttgaaattacaaggtcagggctaatagacataatttcaataccttggcagtg |
406 |
Q |
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| T |
2748242 |
caaaattgtctaaacaaat----taagaatggtatatgactttgtcccttgaaattacaaggtcagggctaatagacataatttcaataccttggcagtg |
2748337 |
T |
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| Q |
407 |
cagtatccaacttttttcatccgtgaatccgaatggatcatcaccaccgccaccgccaccaagaaggcgccgagctgtgccagaaaca |
494 |
Q |
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| T |
2748338 |
cagtatccaac-tttttcatccgtgaatccgaatggatcatcaccaccgccaccgccaccaagaaggcgccgagcagtgccagaaaca |
2748424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 2755990 - 2756297
Alignment:
| Q |
11 |
ttcccagggcttccatcgacgaatctattaacgacaacaatacttattaataaagaagagtttttcacgaacacaatttgttataataaaaagtatatga |
110 |
Q |
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||||||| ||||||| |||||||||||||||| || |||||||| ||||| || ||||| |||| || ||||||||||||| || ||||||| |||||| |
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| T |
2755990 |
ttcccagcgcttccaccgacgaatctattaacaacgacaatactaattaaaaacgaagatcttttaacaaacacaatttgtt-tagtaaaaagcatatga |
2756088 |
T |
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| Q |
111 |
ttagattagatactcacatttagtcctccaaaaataatagtcaaaacacaagaagtcacatgaacaatagctaggacaaaaataaagatatgcagtttat |
210 |
Q |
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| T |
2756089 |
----attagatactcacatttaatcctccaaaaacaatagtcaaaacacatgaagtcacatgaacaacagctagaacaaaaataaagatatgcagtttat |
2756184 |
T |
|
| Q |
211 |
gcaatgcttccacagataatagaggtacttttccctgaaaataa---cataataatacaaaatatgattaaagtgaacaaaatgattaaatcatcaaatt |
307 |
Q |
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| T |
2756185 |
gcaatgcttccacagataatagaggcacctttccctgaaaataacatcataataatacaaaatatgattaaagtggaaaagatgattaattcaccaaatc |
2756284 |
T |
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| Q |
308 |
aaaattgtctaaa |
320 |
Q |
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|||||| |||||| |
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| T |
2756285 |
aaaattctctaaa |
2756297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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