View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752-Insertion-9 (Length: 511)
Name: NF0752-Insertion-9
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752-Insertion-9 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Original strand, 1051271 - 1051777
Alignment:
| Q |
8 |
agattatcgaattgcaatccagaaccccttcttaaaaaataacattgttccgagcggctaaaaacacaaaataatagccaccaaaataagataatgattt |
107 |
Q |
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| T |
1051271 |
agattatcgaattgcaatccacaaccccttcttaaaaaataacattgtttcgagcggctaaaaacataaaataatagctactaaaataaggaaatgatta |
1051370 |
T |
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| Q |
108 |
atcttcaagcgcttattcaagaccaaatttctcacataaagagatgttgaacgctgtcattacgatttacaccttgatttaaacccatcaaattatttat |
207 |
Q |
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| T |
1051371 |
atcttcaagcgcttattcaagaccaaatttctcacataaagagatgttgaacgccgtcattacaatttacaccttgatttaaacccatcaaattatttat |
1051470 |
T |
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| Q |
208 |
tgtggaccatacattataagagaaaagacaagagaagaagaaatgattactaagctcaaagttaattgagcaaaaaacacaagacatataatggtagaca |
307 |
Q |
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| T |
1051471 |
tgtggaccatatattataagagaaaagacaagagaagaagaaatgattactaagctcaaagttaattgagcaaaaaacacaagacatataatggtagaca |
1051570 |
T |
|
| Q |
308 |
tcacccctcttctagccaaagcctctttagatgctagtctcccttgaagtaatctccaaa---------------ccataccttttccaaaagcctttta |
392 |
Q |
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| T |
1051571 |
tcacccctcttctagccaaagcctctttagatgctagtctcccttgaagtaatctccaaaccataattttgttttccataccttttcc-aaagcctttta |
1051669 |
T |
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| Q |
393 |
tgaaaaaccagatcactagattgaacatataaaagcaaaactaaatgtttaaaacaagaactaaccgagaacccctcaacattttttctaacaaccaaat |
492 |
Q |
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| T |
1051670 |
tg-aaaaccagatcactagattgaacatataaaagcaaaaccaaatgtttaaaacaagaactaaccgagaacccctcaaca-tttttctaacaaccaaat |
1051767 |
T |
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| Q |
493 |
cccaccccatc |
503 |
Q |
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| T |
1051768 |
-ccaccccatc |
1051777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 6344059 - 6343914
Alignment:
| Q |
112 |
tcaagcgcttattcaagaccaaatttct-cacataaagagatgttgaacgctgtcattacgatttacaccttgatttaaacccatcaaattatttattgt |
210 |
Q |
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| T |
6344059 |
tcaaacgcttattcaagaccaagttcatacgcataaagagttgttgaacaccttcattatgttttacaccttgaat---actcatcaaattatttacgat |
6343963 |
T |
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| Q |
211 |
ggaccatacattataagagaaaagacaagagaagaagaaatgattacta |
259 |
Q |
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| T |
6343962 |
ggaccatacattataagagaaatgataagagtagaagagatgcttacta |
6343914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 191 - 372
Target Start/End: Complemental strand, 1815 - 1631
Alignment:
| Q |
191 |
cccatcaaattatttattgtggaccatacattataagagaaaagacaagagaagaagaaatgattactaagctcaaagttaattgagcaaaaaacacaag |
290 |
Q |
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|||||| ||||||||| |||||| |||||||||||| |||||||| |||||||| |||| |||||||| ||||| ||| |||||||||||||||||| |
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| T |
1815 |
cccatccaattatttagggtggacaatacattataagctaaaagacatgagaagaaaaaat-attactaaactcaatattatttgagcaaaaaacacaag |
1717 |
T |
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| Q |
291 |
acatat----aatggtagacatcacccctcttctagccaaagcctctttagatgctagtctcccttgaagtaatctccaaaccata |
372 |
Q |
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| T |
1716 |
acatatcatgaatggtagacaatacccgtcttataagtaaatcctctttagttgctagtcccccttaaagtaatctccaaaccata |
1631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 30391063 - 30390922
Alignment:
| Q |
217 |
tacattataagagaaaagacaagagaagaagaaatgattactaagctcaaagttaattgagcaaaaaacacaagacat-----ataat-ggtagacatca |
310 |
Q |
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|||||||||||||||| ||||||||||||||| ||| |||||| ||||| | | |||| |||||||||||| | || || || | ||||||| | |
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| T |
30391063 |
tacattataagagaaatgacaagagaagaagagatggttactagactcaatatcacttgatcaaaaaacacaacatatcatgaatgatagatagacatta |
30390964 |
T |
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| Q |
311 |
cccctcttctagccaaagcctctttagatgctagtctccctt |
352 |
Q |
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| T |
30390963 |
cccctcttctagccaaagcatctctaattgctagtctccctt |
30390922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 41997375 - 41997445
Alignment:
| Q |
190 |
acccatcaaattatttattgtggaccatacattataagagaaaa-gacaagagaagaagaaatgattacta |
259 |
Q |
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| T |
41997375 |
acccatctacttatttatcaaggaccatacattataagataaaaagacaagagaataagagatgattacta |
41997445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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